Wall clock time and date at job start Tue Mar 31 2020 02:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47023 * 2 1 4 4 N 1.46497 * 109.47072 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00435 * 273.83073 * 4 3 2 6 6 H 1.08004 * 119.99129 * 38.61470 * 5 4 3 7 7 C 1.38805 * 120.00189 * 218.61406 * 5 4 3 8 8 N 1.31616 * 120.00289 * 20.31512 * 7 5 4 9 9 Si 1.86809 * 119.99863 * 200.31966 * 7 5 4 10 10 H 1.48503 * 109.47101 * 59.99864 * 9 7 5 11 11 H 1.48492 * 109.47050 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46896 * 299.99848 * 9 7 5 13 13 C 1.46502 * 119.99716 * 93.83273 * 4 3 2 14 14 C 1.53005 * 109.47224 * 269.99940 * 13 4 3 15 15 N 1.46496 * 109.46946 * 180.02562 * 14 13 4 16 16 C 1.34780 * 119.99934 * 180.02562 * 15 14 13 17 17 O 1.21610 * 119.99679 * 359.97438 * 16 15 14 18 18 C 1.47104 * 119.99981 * 180.27631 * 16 15 14 19 19 C 1.32994 * 119.99672 * 173.67929 * 18 16 15 20 20 C 1.50701 * 120.00060 * 353.00390 * 19 18 16 21 21 C 1.50700 * 119.99752 * 173.00866 * 19 18 16 22 22 C 1.52996 * 117.49848 * 188.74722 * 21 19 18 23 23 C 1.53000 * 117.49889 * 120.08401 * 21 19 18 24 24 H 1.09000 * 109.47419 * 300.00270 * 1 2 3 25 25 H 1.09001 * 109.47160 * 59.99789 * 1 2 3 26 26 H 1.08996 * 109.47245 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46927 * 240.00318 * 2 1 3 28 28 H 1.08995 * 109.47307 * 119.99505 * 2 1 3 29 29 H 1.09000 * 109.47244 * 59.99622 * 3 2 1 30 30 H 1.09001 * 109.47325 * 300.00110 * 3 2 1 31 31 H 0.96997 * 120.00231 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46869 * 149.99994 * 13 4 3 33 33 H 1.09003 * 109.47090 * 30.00092 * 13 4 3 34 34 H 1.08996 * 109.46743 * 59.99967 * 14 13 4 35 35 H 1.08997 * 109.46593 * 299.99815 * 14 13 4 36 36 H 0.97003 * 120.00546 * 359.97438 * 15 14 13 37 37 H 1.07998 * 120.00151 * 353.67924 * 18 16 15 38 38 H 1.09003 * 109.46821 * 84.12595 * 20 19 18 39 39 H 1.08999 * 109.46867 * 204.12354 * 20 19 18 40 40 H 1.08997 * 109.47571 * 324.12715 * 20 19 18 41 41 H 1.09001 * 115.55021 * 334.41185 * 21 19 18 42 42 H 1.09000 * 117.50316 * 359.97438 * 22 21 19 43 43 H 1.08998 * 117.50444 * 145.01978 * 22 21 19 44 44 H 1.08998 * 117.50087 * 214.97641 * 23 21 19 45 45 H 1.08999 * 117.49884 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1892 1.3635 1.1841 6 1 3.8259 0.7255 1.9762 7 6 5.3496 2.1033 1.3657 8 7 5.5850 3.1545 0.6095 9 14 6.5772 1.6068 2.6833 10 1 7.0673 0.2318 2.4104 11 1 7.7230 2.5512 2.6734 12 1 5.9174 1.6422 4.0132 13 6 4.2379 1.5272 -1.2650 14 6 4.4932 0.1174 -1.8019 15 7 5.2267 0.2020 -3.0671 16 6 5.5635 -0.9236 -3.7274 17 8 5.2590 -2.0096 -3.2725 18 6 6.3054 -0.8388 -4.9949 19 6 6.7473 -1.9473 -5.5821 20 6 6.6283 -3.2731 -4.8756 21 6 7.3671 -1.8774 -6.9540 22 6 7.6681 -3.2002 -7.6613 23 6 8.8137 -2.3536 -7.1007 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 6.3957 3.6717 0.7366 32 1 5.1903 2.0312 -1.1003 33 1 3.6491 2.0906 -1.9889 34 1 3.5408 -0.3866 -1.9665 35 1 5.0820 -0.4459 -1.0779 36 1 5.4693 1.0682 -3.4302 37 1 6.4912 0.1235 -5.4485 38 1 5.6347 -3.6876 -5.0459 39 1 7.3802 -3.9603 -5.2636 40 1 6.7840 -3.1303 -3.8063 41 1 7.0486 -1.0376 -7.5715 42 1 7.4183 -4.1211 -7.1343 43 1 7.5481 -3.2306 -8.7443 44 1 9.4468 -1.8274 -7.8151 45 1 9.3172 -2.7171 -6.2049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714645203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:31 Heat of formation + Delta-G solvation = 9.844751 kcal Electronic energy + Delta-G solvation = -21878.132269 eV Core-core repulsion = 18704.036533 eV Total energy + Delta-G solvation = -3174.095736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.53895 -37.98738 -36.45444 -34.24916 -33.05564 -32.85490 -30.80750 -28.71009 -27.15788 -25.54872 -24.36473 -22.99766 -22.60697 -20.96078 -20.38683 -19.97559 -18.46990 -16.94476 -16.43149 -16.19171 -15.17475 -14.94962 -14.70118 -14.58526 -14.27610 -13.86989 -13.31957 -13.19662 -13.05396 -12.74464 -12.72789 -12.37111 -12.02225 -11.66546 -11.56037 -11.48174 -11.36228 -11.14824 -11.06705 -10.91949 -10.72507 -10.66529 -10.43186 -10.33351 -10.06973 -9.83978 -9.69040 -9.21044 -8.95892 -8.51403 -8.30349 -6.59179 -5.82244 -3.42898 1.43361 3.36373 3.41869 3.45845 3.50744 3.67610 3.79978 4.43218 4.50486 4.62020 4.70261 4.87333 5.08479 5.28770 5.35000 5.36324 5.50888 5.56036 5.65155 5.68625 5.78289 5.80914 5.83500 5.92218 6.03442 6.12830 6.16407 6.27615 6.30678 6.44865 6.53341 6.54086 6.61536 6.66126 6.69462 6.98305 6.99633 7.07686 7.20491 7.57127 7.80739 8.05945 8.49966 8.71070 9.16092 9.77431 10.36101 11.17598 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015529 B = 0.003892 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.605898 B = 7191.637920 C = 8329.866009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.262 4.262 6 H 0.060 0.940 7 C 0.015 3.985 8 N -0.888 5.888 9 Si 0.897 3.103 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.138 3.862 14 C 0.098 3.902 15 N -0.717 5.717 16 C 0.537 3.463 17 O -0.549 6.549 18 C -0.219 4.219 19 C -0.012 4.012 20 C -0.122 4.122 21 C -0.130 4.130 22 C -0.173 4.173 23 C -0.168 4.168 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.033 0.967 31 H 0.255 0.745 32 H 0.097 0.903 33 H 0.028 0.972 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.397 0.603 37 H 0.124 0.876 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.882 -7.217 -14.661 16.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.392 4.392 6 H 0.078 0.922 7 C -0.185 4.185 8 N -0.530 5.530 9 Si 0.726 3.274 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.011 3.989 14 C -0.027 4.027 15 N -0.367 5.367 16 C 0.326 3.674 17 O -0.430 6.430 18 C -0.240 4.240 19 C -0.014 4.014 20 C -0.178 4.178 21 C -0.148 4.148 22 C -0.210 4.210 23 C -0.205 4.205 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.230 0.770 37 H 0.142 0.858 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.133 0.867 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.775 -7.797 -14.266 16.354 hybrid contribution 0.813 0.303 0.414 0.961 sum 2.587 -7.494 -13.852 15.961 Atomic orbital electron populations 1.21720 0.97362 1.00378 1.00984 1.22199 0.93793 1.00991 1.01563 1.20937 0.85110 0.92913 0.98894 1.43583 0.99400 1.85105 1.01859 1.18977 1.06542 1.20282 0.93370 0.92199 1.25206 1.00810 0.94510 0.98000 1.69971 1.26276 1.15268 1.41495 0.86467 0.80967 0.78119 0.81830 1.20785 1.21574 1.20593 1.21049 1.00204 0.91180 0.86493 1.22422 0.94817 1.02604 0.82881 1.46045 1.57731 1.08280 1.24615 1.18492 0.80043 0.84390 0.84506 1.90728 1.55636 1.27445 1.69192 1.22402 1.04989 0.98884 0.97749 1.21709 0.91757 0.95717 0.92242 1.21135 1.01754 0.93030 1.01902 1.21269 0.98979 0.99466 0.95085 1.23070 1.02840 0.94893 1.00221 1.22991 0.90458 1.03654 1.03401 0.93219 0.93475 0.93829 0.92917 0.92397 0.93531 0.94848 0.93474 0.88498 0.95387 0.93076 0.91889 0.76991 0.85817 0.90392 0.93015 0.88990 0.86730 0.88016 0.88416 0.88328 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 37.16 0.37 -1.85 16 2 C -0.15 -2.71 6.24 -26.73 -0.17 -2.88 16 3 C 0.15 3.11 5.71 -4.04 -0.02 3.09 16 4 N -0.58 -14.16 2.42 -173.23 -0.42 -14.58 16 5 C -0.26 -7.07 9.46 -15.06 -0.14 -7.21 16 6 H 0.06 1.63 7.91 -52.48 -0.42 1.21 16 7 C 0.02 0.41 4.97 -17.43 -0.09 0.33 16 8 N -0.89 -24.86 11.48 55.49 0.64 -24.22 16 9 Si 0.90 21.50 29.60 -169.99 -5.03 16.47 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.14 3.11 5.45 -4.04 -0.02 3.09 16 14 C 0.10 2.04 6.00 -4.04 -0.02 2.01 16 15 N -0.72 -12.47 5.55 -61.49 -0.34 -12.81 16 16 C 0.54 9.34 7.62 -12.66 -0.10 9.24 16 17 O -0.55 -11.20 13.28 5.27 0.07 -11.13 16 18 C -0.22 -2.96 9.67 -37.80 -0.37 -3.32 16 19 C -0.01 -0.15 5.81 -101.17 -0.59 -0.74 16 20 C -0.12 -1.59 7.91 36.01 0.28 -1.30 16 21 C -0.13 -1.22 6.00 -91.77 -0.55 -1.77 16 22 C -0.17 -1.37 9.77 -26.69 -0.26 -1.63 16 23 C -0.17 -1.36 10.11 -26.69 -0.27 -1.63 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 1.01 6.53 -51.93 -0.34 0.67 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 1.01 8.07 -51.93 -0.42 0.59 16 30 H 0.03 0.66 7.85 -51.93 -0.41 0.25 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.10 2.44 5.55 -51.93 -0.29 2.15 16 33 H 0.03 0.59 7.87 -51.93 -0.41 0.18 16 34 H 0.05 1.08 6.53 -51.93 -0.34 0.75 16 35 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.40 5.89 8.46 -40.82 -0.35 5.54 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.08 1.06 8.03 -51.93 -0.42 0.64 16 39 H 0.05 0.54 6.29 -51.93 -0.33 0.22 16 40 H 0.09 1.45 6.15 -51.93 -0.32 1.13 16 41 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.10 0.81 6.41 -51.93 -0.33 0.48 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 363.56 15.07 5.48 5.48 Total: -1.00 -30.05 363.56 -9.27 -39.32 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.72 Total: 6.04 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -1.94 Total: -4.57 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.12 Total: -51.61 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.07 Total: -11.13 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.05 -9.27 -39.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714645203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.167 kcal (2) G-P(sol) polarization free energy of solvation -30.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds