Wall clock time and date at job start Tue Mar 31 2020 02:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47023 * 2 1 4 4 N 1.46497 * 109.47072 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00435 * 273.83073 * 4 3 2 6 6 H 1.08004 * 119.99129 * 38.61470 * 5 4 3 7 7 C 1.38805 * 120.00189 * 218.61406 * 5 4 3 8 8 N 1.31616 * 120.00289 * 20.31512 * 7 5 4 9 9 Si 1.86809 * 119.99863 * 200.31966 * 7 5 4 10 10 H 1.48503 * 109.47101 * 59.99864 * 9 7 5 11 11 H 1.48492 * 109.47050 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46896 * 299.99848 * 9 7 5 13 13 C 1.46502 * 119.99716 * 93.83273 * 4 3 2 14 14 C 1.53005 * 109.47224 * 269.99940 * 13 4 3 15 15 N 1.46496 * 109.46946 * 180.02562 * 14 13 4 16 16 C 1.34780 * 119.99934 * 180.02562 * 15 14 13 17 17 O 1.21610 * 119.99679 * 359.97438 * 16 15 14 18 18 C 1.47104 * 119.99981 * 180.27631 * 16 15 14 19 19 C 1.32994 * 119.99672 * 173.67929 * 18 16 15 20 20 C 1.50701 * 120.00060 * 353.00390 * 19 18 16 21 21 C 1.50700 * 119.99752 * 173.00866 * 19 18 16 22 22 C 1.52996 * 117.49848 * 188.74722 * 21 19 18 23 23 C 1.53000 * 117.49889 * 120.08401 * 21 19 18 24 24 H 1.09000 * 109.47419 * 300.00270 * 1 2 3 25 25 H 1.09001 * 109.47160 * 59.99789 * 1 2 3 26 26 H 1.08996 * 109.47245 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46927 * 240.00318 * 2 1 3 28 28 H 1.08995 * 109.47307 * 119.99505 * 2 1 3 29 29 H 1.09000 * 109.47244 * 59.99622 * 3 2 1 30 30 H 1.09001 * 109.47325 * 300.00110 * 3 2 1 31 31 H 0.96997 * 120.00231 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46869 * 149.99994 * 13 4 3 33 33 H 1.09003 * 109.47090 * 30.00092 * 13 4 3 34 34 H 1.08996 * 109.46743 * 59.99967 * 14 13 4 35 35 H 1.08997 * 109.46593 * 299.99815 * 14 13 4 36 36 H 0.97003 * 120.00546 * 359.97438 * 15 14 13 37 37 H 1.07998 * 120.00151 * 353.67924 * 18 16 15 38 38 H 1.09003 * 109.46821 * 84.12595 * 20 19 18 39 39 H 1.08999 * 109.46867 * 204.12354 * 20 19 18 40 40 H 1.08997 * 109.47571 * 324.12715 * 20 19 18 41 41 H 1.09001 * 115.55021 * 334.41185 * 21 19 18 42 42 H 1.09000 * 117.50316 * 359.97438 * 22 21 19 43 43 H 1.08998 * 117.50444 * 145.01978 * 22 21 19 44 44 H 1.08998 * 117.50087 * 214.97641 * 23 21 19 45 45 H 1.08999 * 117.49884 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1892 1.3635 1.1841 6 1 3.8259 0.7255 1.9762 7 6 5.3496 2.1033 1.3657 8 7 5.5850 3.1545 0.6095 9 14 6.5772 1.6068 2.6833 10 1 7.0673 0.2318 2.4104 11 1 7.7230 2.5512 2.6734 12 1 5.9174 1.6422 4.0132 13 6 4.2379 1.5272 -1.2650 14 6 4.4932 0.1174 -1.8019 15 7 5.2267 0.2020 -3.0671 16 6 5.5635 -0.9236 -3.7274 17 8 5.2590 -2.0096 -3.2725 18 6 6.3054 -0.8388 -4.9949 19 6 6.7473 -1.9473 -5.5821 20 6 6.6283 -3.2731 -4.8756 21 6 7.3671 -1.8774 -6.9540 22 6 7.6681 -3.2002 -7.6613 23 6 8.8137 -2.3536 -7.1007 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 6.3957 3.6717 0.7366 32 1 5.1903 2.0312 -1.1003 33 1 3.6491 2.0906 -1.9889 34 1 3.5408 -0.3866 -1.9665 35 1 5.0820 -0.4459 -1.0779 36 1 5.4693 1.0682 -3.4302 37 1 6.4912 0.1235 -5.4485 38 1 5.6347 -3.6876 -5.0459 39 1 7.3802 -3.9603 -5.2636 40 1 6.7840 -3.1303 -3.8063 41 1 7.0486 -1.0376 -7.5715 42 1 7.4183 -4.1211 -7.1343 43 1 7.5481 -3.2306 -8.7443 44 1 9.4468 -1.8274 -7.8151 45 1 9.3172 -2.7171 -6.2049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714645203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:30 Heat of formation + Delta-G solvation = -6.729838 kcal Electronic energy + Delta-G solvation = -21878.850997 eV Core-core repulsion = 18704.036533 eV Total energy + Delta-G solvation = -3174.814464 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.86721 -38.90000 -38.19250 -35.76433 -34.61515 -34.08935 -32.63384 -30.24987 -28.41117 -27.35146 -25.68152 -24.38340 -23.20487 -22.59530 -21.95417 -21.44537 -19.52436 -18.68509 -17.80809 -17.25346 -16.94139 -16.43922 -16.27672 -15.83711 -15.66201 -15.43729 -14.77740 -14.57954 -14.48247 -14.26836 -13.84924 -13.78429 -13.34149 -13.07860 -12.91725 -12.87782 -12.64267 -12.53302 -12.46295 -12.24485 -12.19696 -12.03576 -11.88345 -11.83721 -11.67998 -11.33811 -11.31691 -10.60986 -10.53467 -10.13293 -9.69133 -8.58701 -7.86552 -5.51718 0.35266 1.43104 1.46580 1.52571 2.26989 2.31998 2.50773 3.02350 3.21162 3.56267 3.78942 3.88081 3.96532 4.13331 4.14712 4.21274 4.30721 4.34636 4.38312 4.53754 4.65930 4.68641 4.72801 4.74786 4.82536 4.84893 4.98071 5.00261 5.09940 5.15449 5.15549 5.22600 5.25347 5.26752 5.42307 5.46460 5.53535 5.57185 5.61765 5.64968 5.74149 6.44332 6.69673 7.13777 7.34035 7.81166 8.34182 9.08914 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015529 B = 0.003892 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.605898 B = 7191.637920 C = 8329.866009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.274 4.274 6 H 0.050 0.950 7 C -0.026 4.026 8 N -0.911 5.911 9 Si 0.952 3.048 10 H -0.287 1.287 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.147 3.853 14 C 0.122 3.878 15 N -0.713 5.713 16 C 0.531 3.469 17 O -0.587 6.587 18 C -0.236 4.236 19 C 0.003 3.997 20 C -0.122 4.122 21 C -0.144 4.144 22 C -0.166 4.166 23 C -0.162 4.162 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.048 0.952 31 H 0.254 0.746 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.026 0.974 36 H 0.411 0.589 37 H 0.153 0.847 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.131 0.869 42 H 0.099 0.901 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 -7.509 -16.671 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.318 5.318 5 C -0.404 4.404 6 H 0.068 0.932 7 C -0.224 4.224 8 N -0.554 5.554 9 Si 0.780 3.220 10 H -0.213 1.213 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.020 3.980 14 C -0.004 4.004 15 N -0.364 5.364 16 C 0.322 3.678 17 O -0.470 6.470 18 C -0.257 4.257 19 C 0.001 3.999 20 C -0.178 4.178 21 C -0.162 4.162 22 C -0.203 4.203 23 C -0.198 4.198 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.246 0.754 37 H 0.171 0.829 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.149 0.851 42 H 0.117 0.883 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.055 -8.077 -16.294 18.302 hybrid contribution 0.715 0.312 0.992 1.261 sum 2.769 -7.766 -15.302 17.382 Atomic orbital electron populations 1.21652 0.94170 1.01790 1.02034 1.22022 0.96495 0.98781 1.00165 1.21051 0.83371 0.94492 0.99060 1.43821 1.00850 1.85391 1.01733 1.19123 1.07239 1.19903 0.94140 0.93191 1.25790 1.02068 0.94599 0.99992 1.70064 1.26536 1.15966 1.42795 0.85603 0.79087 0.77297 0.80038 1.21332 1.21233 1.19878 1.20901 0.99078 0.91786 0.86279 1.21868 0.94187 1.00801 0.83594 1.45898 1.57611 1.09370 1.23501 1.19189 0.79635 0.83499 0.85457 1.90714 1.57162 1.28708 1.70428 1.22355 1.06223 1.00823 0.96276 1.22003 0.89942 0.94677 0.93290 1.21068 1.02105 0.94377 1.00235 1.21327 1.00146 1.01279 0.93479 1.23186 1.01966 0.93866 1.01242 1.23088 0.89885 1.03295 1.03571 0.92518 0.92078 0.92263 0.93757 0.94349 0.94489 0.93388 0.93645 0.90953 0.93858 0.93589 0.95573 0.75369 0.82924 0.91206 0.90455 0.92128 0.85131 0.88298 0.86453 0.86423 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.91 71.98 0.71 -3.22 16 2 C -0.13 -5.01 6.24 30.60 0.19 -4.82 16 3 C 0.15 6.14 5.71 86.38 0.49 6.64 16 4 N -0.60 -29.73 2.42 -701.98 -1.70 -31.43 16 5 C -0.27 -15.11 9.46 84.03 0.79 -14.32 16 6 H 0.05 2.80 7.91 -2.91 -0.02 2.78 16 7 C -0.03 -1.45 4.97 84.86 0.42 -1.03 16 8 N -0.91 -51.67 11.48 21.65 0.25 -51.42 16 9 Si 0.95 44.86 29.60 68.60 2.03 46.89 16 10 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 C 0.15 6.72 5.45 86.38 0.47 7.19 16 14 C 0.12 5.22 6.00 86.38 0.52 5.74 16 15 N -0.71 -25.09 5.55 -466.72 -2.59 -27.68 16 16 C 0.53 18.69 7.62 86.57 0.66 19.35 16 17 O -0.59 -24.77 13.28 -4.06 -0.05 -24.83 16 18 C -0.24 -6.12 9.67 23.43 0.23 -5.89 16 19 C 0.00 0.07 5.81 -17.62 -0.10 -0.04 16 20 C -0.12 -3.13 7.91 71.24 0.56 -2.56 16 21 C -0.14 -2.30 6.00 -11.54 -0.07 -2.37 16 22 C -0.17 -2.08 9.77 30.62 0.30 -1.78 16 23 C -0.16 -2.10 10.11 30.62 0.31 -1.79 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.04 1.70 6.53 -2.39 -0.02 1.69 16 28 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.04 1.61 8.07 -2.39 -0.02 1.59 16 30 H 0.05 1.86 7.85 -2.39 -0.02 1.85 16 31 H 0.25 13.94 8.31 -92.71 -0.77 13.16 16 32 H 0.07 3.73 5.55 -2.39 -0.01 3.72 16 33 H 0.04 1.82 7.87 -2.39 -0.02 1.80 16 34 H 0.05 2.01 6.53 -2.39 -0.02 1.99 16 35 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.41 12.06 8.46 -92.71 -0.78 11.28 16 37 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.07 1.91 8.03 -2.39 -0.02 1.89 16 39 H 0.08 1.53 6.29 -2.39 -0.02 1.52 16 40 H 0.06 1.97 6.15 -2.39 -0.01 1.96 16 41 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.10 1.31 6.41 -2.39 -0.02 1.29 16 43 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -66.30 363.56 3.60 -62.70 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.18 Total: 24.68 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 5.49 Total: 1.09 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -4.04 Total: -110.53 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.05 Total: -24.83 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -66.30 3.60 -62.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714645203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.969 kcal (2) G-P(sol) polarization free energy of solvation -66.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds