Wall clock time and date at job start Tue Mar 31 2020 02:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47164 * 2 1 4 4 N 1.46505 * 109.47250 * 179.97438 * 3 2 1 5 5 C 1.36939 * 119.99839 * 269.72600 * 4 3 2 6 6 H 1.08001 * 119.99957 * 33.02678 * 5 4 3 7 7 C 1.38807 * 119.99934 * 213.02066 * 5 4 3 8 8 N 1.31624 * 120.00128 * 24.60196 * 7 5 4 9 9 Si 1.86800 * 120.00402 * 204.60228 * 7 5 4 10 10 H 1.48505 * 109.47164 * 89.99757 * 9 7 5 11 11 H 1.48495 * 109.47404 * 210.00346 * 9 7 5 12 12 H 1.48503 * 109.46810 * 330.00478 * 9 7 5 13 13 C 1.46500 * 119.99919 * 89.99549 * 4 3 2 14 14 C 1.52996 * 109.47572 * 264.51101 * 13 4 3 15 15 N 1.46491 * 109.47502 * 180.02562 * 14 13 4 16 16 C 1.34773 * 120.00434 * 180.02562 * 15 14 13 17 17 O 1.21285 * 120.00143 * 359.97438 * 16 15 14 18 18 C 1.50704 * 120.00090 * 179.97438 * 16 15 14 19 19 H 1.08999 * 115.55111 * 34.42234 * 18 16 15 20 20 C 1.53004 * 117.49878 * 248.74444 * 18 16 15 21 21 C 1.53001 * 117.49591 * 180.08434 * 18 16 15 22 22 H 1.08997 * 117.50245 * 0.02562 * 21 18 16 23 23 C 1.53002 * 117.49976 * 215.00364 * 21 18 16 24 24 C 1.52995 * 117.50025 * 128.62490 * 23 21 18 25 25 C 1.53001 * 117.49797 * 60.00013 * 23 21 18 26 26 H 1.08999 * 109.46824 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47048 * 300.00178 * 1 2 3 28 28 H 1.09007 * 109.46603 * 59.99872 * 1 2 3 29 29 H 1.08996 * 109.47048 * 239.99822 * 2 1 3 30 30 H 1.08997 * 109.47144 * 120.00084 * 2 1 3 31 31 H 1.08996 * 109.47284 * 59.99966 * 3 2 1 32 32 H 1.08997 * 109.47158 * 300.00075 * 3 2 1 33 33 H 0.96991 * 120.00212 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.47020 * 24.51357 * 13 4 3 35 35 H 1.09001 * 109.46685 * 144.50986 * 13 4 3 36 36 H 1.09004 * 109.47157 * 300.00172 * 14 13 4 37 37 H 1.09001 * 109.46945 * 59.99724 * 14 13 4 38 38 H 0.97009 * 119.99953 * 0.02562 * 15 14 13 39 39 H 1.08993 * 117.49647 * 0.02562 * 20 18 16 40 40 H 1.09003 * 117.49561 * 145.02341 * 20 18 16 41 41 H 1.09001 * 115.54675 * 274.33318 * 23 21 18 42 42 H 1.09003 * 117.49943 * 359.97438 * 24 23 21 43 43 H 1.08995 * 117.50152 * 145.02281 * 24 23 21 44 44 H 1.09001 * 117.50076 * 214.97709 * 25 23 21 45 45 H 1.08997 * 117.49826 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1892 1.4484 1.1868 6 1 3.7797 0.9428 2.0489 7 6 5.4091 2.1039 1.2812 8 7 5.6914 3.0908 0.4572 9 14 6.6502 1.5858 2.5776 10 1 7.5395 0.5354 2.0197 11 1 7.4641 2.7604 2.9813 12 1 5.9335 1.0493 3.7625 13 6 4.2381 1.4422 -1.2678 14 6 4.6128 0.0063 -1.6401 15 7 5.3463 0.0061 -2.9081 16 6 5.7799 -1.1558 -3.4358 17 8 5.5632 -2.2013 -2.8605 18 6 6.5339 -1.1559 -4.7406 19 1 7.1813 -0.2955 -4.9095 20 6 5.8379 -1.7665 -5.9587 21 6 6.9977 -2.5072 -5.2882 22 1 6.7571 -3.3961 -4.7051 23 6 8.3346 -2.5472 -6.0312 24 6 9.3575 -3.5954 -5.5891 25 6 9.5846 -2.1186 -5.2600 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8899 33 1 6.5436 3.5491 0.5234 34 1 3.6103 1.8684 -2.0504 35 1 5.1443 2.0389 -1.1638 36 1 5.2406 -0.4199 -0.8576 37 1 3.7066 -0.5903 -1.7440 38 1 5.5200 0.8424 -3.3681 39 1 4.8345 -2.1676 -5.8164 40 1 6.0277 -1.3078 -6.9291 41 1 8.2899 -2.3034 -7.0927 42 1 9.0783 -4.2564 -4.7685 43 1 9.9861 -4.0417 -6.3597 44 1 10.3625 -1.5933 -5.8141 45 1 9.4544 -1.8078 -4.2234 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714658097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:51 Heat of formation + Delta-G solvation = 16.720321 kcal Electronic energy + Delta-G solvation = -21999.484305 eV Core-core repulsion = 18825.686716 eV Total energy + Delta-G solvation = -3173.797589 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.79730 -37.90492 -36.48730 -34.94073 -34.12848 -32.89544 -30.77472 -28.38936 -25.58617 -24.98637 -23.61690 -22.82982 -22.45940 -20.93654 -20.37538 -20.07765 -19.48518 -17.25165 -16.51539 -15.94902 -15.28248 -15.14004 -14.94867 -14.48938 -14.28919 -14.01785 -13.62967 -13.19244 -13.00586 -12.76795 -12.50945 -12.30621 -11.75726 -11.60823 -11.51343 -11.50887 -11.18845 -11.03977 -10.95789 -10.94041 -10.74731 -10.41703 -10.34389 -10.14962 -10.03633 -9.88932 -9.79817 -9.75255 -9.38909 -8.55984 -8.42145 -6.69535 -5.82591 -3.37765 2.78653 3.35625 3.41250 3.44035 3.46434 3.70180 3.91793 4.45207 4.50226 4.67603 4.76912 4.94198 4.96231 5.18257 5.24742 5.27881 5.34070 5.48606 5.51078 5.60358 5.65029 5.74672 5.75547 5.88195 6.00018 6.02014 6.02157 6.14182 6.20616 6.24926 6.27581 6.41883 6.53755 6.60691 6.66186 6.93475 6.95154 7.05411 7.15570 7.59850 7.79811 7.99920 8.43695 8.65688 9.12932 9.77201 10.31570 11.15633 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.004319 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.312994 B = 6481.919982 C = 7826.982830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.258 4.258 6 H 0.065 0.935 7 C 0.010 3.990 8 N -0.886 5.886 9 Si 0.895 3.105 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.277 1.277 13 C 0.130 3.870 14 C 0.100 3.900 15 N -0.715 5.715 16 C 0.534 3.466 17 O -0.551 6.551 18 C -0.182 4.182 19 H 0.122 0.878 20 C -0.146 4.146 21 C -0.093 4.093 22 H 0.118 0.882 23 C -0.126 4.126 24 C -0.175 4.175 25 C -0.177 4.177 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.032 0.968 33 H 0.255 0.745 34 H 0.028 0.972 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.398 0.602 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.690 -6.636 -13.652 15.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.388 4.388 6 H 0.082 0.918 7 C -0.190 4.190 8 N -0.529 5.529 9 Si 0.724 3.276 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.002 3.998 14 C -0.025 4.025 15 N -0.365 5.365 16 C 0.320 3.680 17 O -0.429 6.429 18 C -0.204 4.204 19 H 0.140 0.860 20 C -0.183 4.183 21 C -0.111 4.111 22 H 0.136 0.864 23 C -0.144 4.144 24 C -0.212 4.212 25 C -0.214 4.214 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.231 0.769 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.639 -7.218 -13.172 15.109 hybrid contribution 0.844 0.157 0.452 0.970 sum 2.483 -7.061 -12.720 14.759 Atomic orbital electron populations 1.21722 0.97297 1.00417 1.01018 1.22200 0.93848 1.00937 1.01556 1.20942 0.84974 0.92975 0.99024 1.43682 0.99468 1.84861 1.01991 1.19085 1.02293 1.27307 0.90072 0.91777 1.25020 1.00501 0.95169 0.98293 1.69962 1.23182 1.19738 1.40039 0.86410 0.81710 0.77881 0.81591 1.21302 1.21747 1.20173 1.21176 0.99974 0.92105 0.86520 1.22368 0.94825 1.02275 0.83014 1.46048 1.56916 1.08442 1.25076 1.19621 0.79001 0.84033 0.85356 1.90668 1.57957 1.31808 1.62487 1.22353 1.04456 0.99640 0.93906 0.85971 1.23025 0.97630 1.02452 0.95196 1.21803 0.93128 0.95218 1.00968 0.86398 1.21761 0.88897 1.05175 0.98596 1.22982 1.02389 0.92327 1.03534 1.22992 0.99109 0.97628 1.01697 0.93799 0.93184 0.93448 0.92986 0.92365 0.93278 0.94920 0.93539 0.95327 0.87777 0.91807 0.93162 0.76913 0.88254 0.87938 0.87508 0.88583 0.88850 0.88830 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.15 -2.67 6.26 -26.73 -0.17 -2.83 16 3 C 0.15 3.05 5.71 -4.04 -0.02 3.03 16 4 N -0.58 -14.06 2.47 -173.24 -0.43 -14.48 16 5 C -0.26 -6.94 9.45 -15.06 -0.14 -7.08 16 6 H 0.06 1.74 7.94 -52.49 -0.42 1.32 16 7 C 0.01 0.27 4.97 -17.43 -0.09 0.19 16 8 N -0.89 -24.66 11.28 55.49 0.63 -24.03 16 9 Si 0.89 21.61 29.62 -169.99 -5.03 16.57 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 13 C 0.13 2.90 5.49 -4.04 -0.02 2.87 16 14 C 0.10 2.10 5.97 -4.05 -0.02 2.08 16 15 N -0.72 -12.42 5.56 -60.30 -0.33 -12.75 16 16 C 0.53 9.29 7.61 -10.99 -0.08 9.21 16 17 O -0.55 -11.76 16.26 5.55 0.09 -11.67 16 18 C -0.18 -2.33 5.83 -91.77 -0.54 -2.87 16 19 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 20 C -0.15 -1.55 9.96 -26.69 -0.27 -1.81 16 21 C -0.09 -1.10 5.38 -90.58 -0.49 -1.58 16 22 H 0.12 1.63 7.67 -51.93 -0.40 1.23 16 23 C -0.13 -1.23 5.87 -90.62 -0.53 -1.76 16 24 C -0.18 -1.63 10.25 -26.73 -0.27 -1.91 16 25 C -0.18 -1.74 10.18 -26.73 -0.27 -2.01 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.98 6.66 -51.93 -0.35 0.64 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 32 H 0.03 0.64 7.86 -51.93 -0.41 0.23 16 33 H 0.25 6.85 8.31 -40.82 -0.34 6.52 16 34 H 0.03 0.59 7.83 -51.93 -0.41 0.18 16 35 H 0.10 2.61 5.29 -51.93 -0.27 2.34 16 36 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.05 1.08 6.66 -51.93 -0.35 0.73 16 38 H 0.40 5.84 8.47 -40.82 -0.35 5.49 16 39 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -30.28 369.91 -10.04 -40.32 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.99 Total: 6.75 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -2.55 Total: -6.28 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.14 Total: -51.27 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.28 -10.04 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714658097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.043 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds