Wall clock time and date at job start Tue Mar 31 2020 02:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47164 * 2 1 4 4 N 1.46505 * 109.47250 * 179.97438 * 3 2 1 5 5 C 1.36939 * 119.99839 * 269.72600 * 4 3 2 6 6 H 1.08001 * 119.99957 * 33.02678 * 5 4 3 7 7 C 1.38807 * 119.99934 * 213.02066 * 5 4 3 8 8 N 1.31624 * 120.00128 * 24.60196 * 7 5 4 9 9 Si 1.86800 * 120.00402 * 204.60228 * 7 5 4 10 10 H 1.48505 * 109.47164 * 89.99757 * 9 7 5 11 11 H 1.48495 * 109.47404 * 210.00346 * 9 7 5 12 12 H 1.48503 * 109.46810 * 330.00478 * 9 7 5 13 13 C 1.46500 * 119.99919 * 89.99549 * 4 3 2 14 14 C 1.52996 * 109.47572 * 264.51101 * 13 4 3 15 15 N 1.46491 * 109.47502 * 180.02562 * 14 13 4 16 16 C 1.34773 * 120.00434 * 180.02562 * 15 14 13 17 17 O 1.21285 * 120.00143 * 359.97438 * 16 15 14 18 18 C 1.50704 * 120.00090 * 179.97438 * 16 15 14 19 19 H 1.08999 * 115.55111 * 34.42234 * 18 16 15 20 20 C 1.53004 * 117.49878 * 248.74444 * 18 16 15 21 21 C 1.53001 * 117.49591 * 180.08434 * 18 16 15 22 22 H 1.08997 * 117.50245 * 0.02562 * 21 18 16 23 23 C 1.53002 * 117.49976 * 215.00364 * 21 18 16 24 24 C 1.52995 * 117.50025 * 128.62490 * 23 21 18 25 25 C 1.53001 * 117.49797 * 60.00013 * 23 21 18 26 26 H 1.08999 * 109.46824 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47048 * 300.00178 * 1 2 3 28 28 H 1.09007 * 109.46603 * 59.99872 * 1 2 3 29 29 H 1.08996 * 109.47048 * 239.99822 * 2 1 3 30 30 H 1.08997 * 109.47144 * 120.00084 * 2 1 3 31 31 H 1.08996 * 109.47284 * 59.99966 * 3 2 1 32 32 H 1.08997 * 109.47158 * 300.00075 * 3 2 1 33 33 H 0.96991 * 120.00212 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.47020 * 24.51357 * 13 4 3 35 35 H 1.09001 * 109.46685 * 144.50986 * 13 4 3 36 36 H 1.09004 * 109.47157 * 300.00172 * 14 13 4 37 37 H 1.09001 * 109.46945 * 59.99724 * 14 13 4 38 38 H 0.97009 * 119.99953 * 0.02562 * 15 14 13 39 39 H 1.08993 * 117.49647 * 0.02562 * 20 18 16 40 40 H 1.09003 * 117.49561 * 145.02341 * 20 18 16 41 41 H 1.09001 * 115.54675 * 274.33318 * 23 21 18 42 42 H 1.09003 * 117.49943 * 359.97438 * 24 23 21 43 43 H 1.08995 * 117.50152 * 145.02281 * 24 23 21 44 44 H 1.09001 * 117.50076 * 214.97709 * 25 23 21 45 45 H 1.08997 * 117.49826 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1892 1.4484 1.1868 6 1 3.7797 0.9428 2.0489 7 6 5.4091 2.1039 1.2812 8 7 5.6914 3.0908 0.4572 9 14 6.6502 1.5858 2.5776 10 1 7.5395 0.5354 2.0197 11 1 7.4641 2.7604 2.9813 12 1 5.9335 1.0493 3.7625 13 6 4.2381 1.4422 -1.2678 14 6 4.6128 0.0063 -1.6401 15 7 5.3463 0.0061 -2.9081 16 6 5.7799 -1.1558 -3.4358 17 8 5.5632 -2.2013 -2.8605 18 6 6.5339 -1.1559 -4.7406 19 1 7.1813 -0.2955 -4.9095 20 6 5.8379 -1.7665 -5.9587 21 6 6.9977 -2.5072 -5.2882 22 1 6.7571 -3.3961 -4.7051 23 6 8.3346 -2.5472 -6.0312 24 6 9.3575 -3.5954 -5.5891 25 6 9.5846 -2.1186 -5.2600 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8899 33 1 6.5436 3.5491 0.5234 34 1 3.6103 1.8684 -2.0504 35 1 5.1443 2.0389 -1.1638 36 1 5.2406 -0.4199 -0.8576 37 1 3.7066 -0.5903 -1.7440 38 1 5.5200 0.8424 -3.3681 39 1 4.8345 -2.1676 -5.8164 40 1 6.0277 -1.3078 -6.9291 41 1 8.2899 -2.3034 -7.0927 42 1 9.0783 -4.2564 -4.7685 43 1 9.9861 -4.0417 -6.3597 44 1 10.3625 -1.5933 -5.8141 45 1 9.4544 -1.8078 -4.2234 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714658097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:50 Heat of formation + Delta-G solvation = 0.111860 kcal Electronic energy + Delta-G solvation = -22000.204502 eV Core-core repulsion = 18825.686716 eV Total energy + Delta-G solvation = -3174.517786 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.08625 -38.98965 -38.20327 -35.93050 -35.65554 -34.64021 -32.60409 -30.06277 -27.37213 -26.30749 -24.78984 -24.07175 -23.24166 -22.57905 -21.91105 -21.35111 -20.62483 -18.84913 -18.12648 -17.08173 -17.01139 -16.52771 -16.34058 -15.91992 -15.70168 -15.59246 -15.07377 -14.65641 -14.42754 -14.29003 -13.95170 -13.39346 -13.36510 -13.09958 -12.92907 -12.67406 -12.53253 -12.52802 -12.31993 -12.23192 -12.02361 -11.90392 -11.87049 -11.81903 -11.71712 -11.37025 -11.05570 -10.87617 -10.58493 -10.54050 -10.04775 -8.68316 -7.86795 -5.45584 1.40292 1.45537 1.47983 1.51363 2.14040 2.47980 2.68578 3.04144 3.18234 3.56861 3.70928 3.76858 3.86093 4.06180 4.14886 4.19565 4.25746 4.32246 4.35741 4.36718 4.49617 4.54438 4.66000 4.70860 4.79992 4.80663 4.84063 4.96506 4.99425 5.03011 5.14234 5.20516 5.21226 5.24839 5.27317 5.34479 5.41033 5.43513 5.60016 5.63591 5.76364 6.39817 6.60512 7.10871 7.26345 7.81595 8.30337 9.07186 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.004319 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.312994 B = 6481.919982 C = 7826.982830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.597 5.597 5 C -0.268 4.268 6 H 0.054 0.946 7 C -0.029 4.029 8 N -0.907 5.907 9 Si 0.945 3.055 10 H -0.295 1.295 11 H -0.287 1.287 12 H -0.271 1.271 13 C 0.137 3.863 14 C 0.123 3.877 15 N -0.709 5.709 16 C 0.530 3.470 17 O -0.597 6.597 18 C -0.191 4.191 19 H 0.145 0.855 20 C -0.121 4.121 21 C -0.098 4.098 22 H 0.090 0.910 23 C -0.121 4.121 24 C -0.177 4.177 25 C -0.182 4.182 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.254 0.746 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.022 0.978 37 H 0.045 0.955 38 H 0.413 0.587 39 H 0.091 0.909 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.615 -6.524 -15.894 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C 0.019 3.981 4 N -0.318 5.318 5 C -0.399 4.399 6 H 0.072 0.928 7 C -0.227 4.227 8 N -0.551 5.551 9 Si 0.774 3.226 10 H -0.222 1.222 11 H -0.213 1.213 12 H -0.196 1.196 13 C 0.010 3.990 14 C -0.004 4.004 15 N -0.359 5.359 16 C 0.318 3.682 17 O -0.479 6.479 18 C -0.211 4.211 19 H 0.163 0.837 20 C -0.158 4.158 21 C -0.117 4.117 22 H 0.108 0.892 23 C -0.138 4.138 24 C -0.214 4.214 25 C -0.219 4.219 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.249 0.751 39 H 0.109 0.891 40 H 0.157 0.843 41 H 0.151 0.849 42 H 0.099 0.901 43 H 0.133 0.867 44 H 0.131 0.869 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.549 -7.088 -15.433 17.054 hybrid contribution 0.822 0.081 1.155 1.420 sum 2.372 -7.007 -14.278 16.081 Atomic orbital electron populations 1.21654 0.94091 1.01801 1.02103 1.22027 0.96560 0.98749 1.00152 1.21074 0.83121 0.94548 0.99334 1.43918 1.00994 1.85079 1.01783 1.19216 1.02969 1.26813 0.90854 0.92805 1.25548 1.01641 0.95378 1.00131 1.70042 1.23365 1.20429 1.41277 0.85613 0.79790 0.77221 0.79990 1.22218 1.21312 1.19571 1.21043 0.99207 0.92264 0.86479 1.21841 0.93997 1.00967 0.83587 1.45913 1.56546 1.09569 1.23896 1.20462 0.78287 0.82953 0.86525 1.90644 1.59744 1.33380 1.64134 1.22312 1.05368 1.01264 0.92200 0.83694 1.23176 0.96673 1.00493 0.95429 1.21800 0.95195 0.93522 1.01151 0.89229 1.21818 0.87373 1.05197 0.99447 1.23056 1.02625 0.92036 1.03687 1.23007 0.99914 0.98178 1.00825 0.92298 0.92505 0.91963 0.93754 0.94421 0.94086 0.93324 0.93673 0.93313 0.90120 0.95919 0.93697 0.75104 0.89055 0.84263 0.84859 0.90096 0.86686 0.86888 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.91 71.98 0.71 -3.11 16 2 C -0.14 -4.90 6.26 30.59 0.19 -4.71 16 3 C 0.14 5.95 5.71 86.38 0.49 6.44 16 4 N -0.60 -29.32 2.47 -702.00 -1.73 -31.05 16 5 C -0.27 -14.72 9.45 84.03 0.79 -13.93 16 6 H 0.05 3.00 7.94 -2.91 -0.02 2.98 16 7 C -0.03 -1.60 4.97 84.86 0.42 -1.18 16 8 N -0.91 -51.07 11.28 21.65 0.24 -50.83 16 9 Si 0.94 45.16 29.62 68.60 2.03 47.19 16 10 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 13 C 0.14 6.19 5.49 86.38 0.47 6.66 16 14 C 0.12 5.27 5.97 86.38 0.52 5.79 16 15 N -0.71 -24.69 5.56 -463.08 -2.57 -27.27 16 16 C 0.53 18.56 7.61 87.66 0.67 19.23 16 17 O -0.60 -26.45 16.26 -3.04 -0.05 -26.50 16 18 C -0.19 -4.60 5.83 -11.54 -0.07 -4.67 16 19 H 0.15 2.85 8.14 -2.39 -0.02 2.83 16 20 C -0.12 -2.24 9.96 30.62 0.30 -1.93 16 21 C -0.10 -2.20 5.38 -10.77 -0.06 -2.25 16 22 H 0.09 2.54 7.67 -2.39 -0.02 2.52 16 23 C -0.12 -2.04 5.87 -10.79 -0.06 -2.11 16 24 C -0.18 -3.03 10.25 30.59 0.31 -2.71 16 25 C -0.18 -3.27 10.18 30.60 0.31 -2.96 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.04 1.66 6.66 -2.39 -0.02 1.64 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.73 8.04 -2.39 -0.02 1.71 16 32 H 0.05 1.83 7.86 -2.39 -0.02 1.81 16 33 H 0.25 13.80 8.31 -92.72 -0.77 13.03 16 34 H 0.05 1.97 7.83 -2.38 -0.02 1.95 16 35 H 0.08 4.12 5.29 -2.39 -0.01 4.10 16 36 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.04 1.97 6.66 -2.39 -0.02 1.95 16 38 H 0.41 11.79 8.47 -92.70 -0.79 11.01 16 39 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 43 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -67.38 369.91 3.10 -64.28 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.17 Total: 25.59 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 5.01 Total: -1.43 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -4.06 Total: -109.14 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.05 Total: -26.50 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -67.38 3.10 -64.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714658097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.393 kcal (2) G-P(sol) polarization free energy of solvation -67.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds