Wall clock time and date at job start Tue Mar 31 2020 02:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46824 * 2 1 4 4 N 1.46502 * 109.47272 * 180.02562 * 3 2 1 5 5 C 1.34784 * 119.99492 * 277.35541 * 4 3 2 6 6 O 1.21612 * 119.99217 * 183.95107 * 5 4 3 7 7 C 1.47093 * 119.99932 * 3.94870 * 5 4 3 8 8 C 1.32995 * 119.99816 * 174.21416 * 7 5 4 9 9 C 1.50701 * 120.00056 * 352.59327 * 8 7 5 10 10 C 1.50705 * 120.00290 * 172.59649 * 8 7 5 11 11 C 1.46495 * 120.00258 * 97.08015 * 4 3 2 12 12 H 1.08998 * 110.88482 * 190.76599 * 11 4 3 13 13 C 1.55154 * 111.00491 * 66.88547 * 11 4 3 14 14 C 1.54323 * 102.94290 * 277.42869 * 13 11 4 15 15 N 1.47017 * 107.27122 * 337.80621 * 14 13 11 16 16 C 1.36942 * 125.65137 * 178.98841 * 15 14 13 17 17 H 1.07996 * 119.99871 * 175.09610 * 16 15 14 18 18 C 1.38813 * 119.99678 * 355.09566 * 16 15 14 19 19 N 1.31625 * 120.00170 * 6.95494 * 18 16 15 20 20 Si 1.86804 * 119.99901 * 186.95535 * 18 16 15 21 21 H 1.48498 * 109.46774 * 94.98875 * 20 18 16 22 22 H 1.48496 * 109.46744 * 214.98863 * 20 18 16 23 23 H 1.48497 * 109.47147 * 334.99072 * 20 18 16 24 24 C 1.47425 * 108.70349 * 358.94045 * 15 14 13 25 25 H 1.09006 * 109.47319 * 60.00653 * 1 2 3 26 26 H 1.09008 * 109.46652 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47687 * 300.00199 * 1 2 3 28 28 H 1.08995 * 109.47264 * 240.00124 * 2 1 3 29 29 H 1.08993 * 109.47304 * 119.99634 * 2 1 3 30 30 H 1.08998 * 109.47663 * 59.99541 * 3 2 1 31 31 H 1.09004 * 109.47299 * 300.00107 * 3 2 1 32 32 H 1.07997 * 120.00414 * 354.21425 * 7 5 4 33 33 H 1.09001 * 109.47297 * 83.42646 * 9 8 7 34 34 H 1.09001 * 109.47309 * 203.43194 * 9 8 7 35 35 H 1.09003 * 109.47269 * 323.43100 * 9 8 7 36 36 H 1.09001 * 109.46694 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.47218 * 120.00021 * 10 8 7 38 38 H 1.08997 * 109.46744 * 240.00193 * 10 8 7 39 39 H 1.09001 * 110.72176 * 35.79187 * 13 11 4 40 40 H 1.08999 * 110.72592 * 159.06194 * 13 11 4 41 41 H 1.08995 * 109.88505 * 97.22421 * 14 13 11 42 42 H 1.09007 * 109.88189 * 218.38911 * 14 13 11 43 43 H 0.96996 * 119.99916 * 180.02562 * 19 18 16 44 44 H 1.09000 * 110.36807 * 265.29349 * 24 15 14 45 45 H 1.09000 * 110.36501 * 142.96492 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1792 1.2931 1.1568 6 8 5.3932 1.3650 1.1668 7 6 3.4468 1.0430 2.4076 8 6 4.1141 0.7812 3.5279 9 6 5.6064 0.5756 3.4856 10 6 3.3779 0.6901 4.8398 11 6 4.2369 1.5993 -1.2599 12 1 5.2977 1.3904 -1.1213 13 6 4.0222 3.0158 -1.8555 14 6 2.6718 2.8808 -2.5902 15 7 2.4678 1.4519 -2.8695 16 6 1.3763 0.9083 -3.4928 17 1 1.3557 -0.1466 -3.7230 18 6 0.2966 1.7134 -3.8288 19 7 0.3752 3.0182 -3.6743 20 14 -1.2682 0.9450 -4.5001 21 1 -2.2292 0.7281 -3.3890 22 1 -1.8728 1.8532 -5.5075 23 1 -0.9463 -0.3571 -5.1374 24 6 3.6334 0.7011 -2.3684 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8899 30 1 1.6765 1.9564 0.8899 31 1 1.6765 1.9564 -0.8900 32 1 2.3673 1.0719 2.4164 33 1 6.1073 1.5434 3.5081 34 1 5.9165 -0.0143 4.3482 35 1 5.8748 0.0489 2.5698 36 1 2.3152 0.8663 4.6729 37 1 3.5192 -0.3024 5.2676 38 1 3.7667 1.4410 5.5275 39 1 3.9573 3.7615 -1.0632 40 1 4.8193 3.2645 -2.5561 41 1 1.8665 3.2534 -1.9572 42 1 2.7008 3.4408 -3.5250 43 1 -0.3794 3.5806 -3.9087 44 1 4.3579 0.5471 -3.1681 45 1 3.3179 -0.2554 -1.9516 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714853774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:15 Heat of formation + Delta-G solvation = 8.990178 kcal Electronic energy + Delta-G solvation = -23812.048192 eV Core-core repulsion = 20637.915399 eV Total energy + Delta-G solvation = -3174.132793 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.98426 -37.77288 -35.24191 -34.84777 -32.88325 -31.53312 -29.26885 -28.24471 -27.73154 -27.13332 -25.60684 -24.19965 -21.80772 -20.90601 -20.06575 -18.99363 -17.80434 -17.12512 -16.89981 -15.59961 -14.86450 -14.67973 -14.22621 -14.16042 -13.90127 -13.72807 -13.67030 -13.22483 -12.72951 -12.44075 -12.26847 -12.17815 -11.95886 -11.85804 -11.72864 -11.59463 -11.25220 -11.15419 -11.03871 -10.95633 -10.89327 -10.48345 -10.25010 -10.13973 -9.95430 -9.72752 -9.66969 -9.09733 -8.93812 -8.63264 -8.00305 -6.85160 -5.75983 -3.08119 1.54374 3.35944 3.43094 3.44390 3.52156 3.62308 4.46481 4.76862 4.89234 5.22154 5.37791 5.40877 5.42461 5.46267 5.53550 5.55769 5.65880 5.69275 5.75103 5.78819 5.84722 5.91579 5.96064 6.04683 6.18773 6.25753 6.28316 6.36387 6.42610 6.50291 6.56872 6.59639 6.64027 6.69873 6.76241 6.91126 6.94740 7.27021 7.54198 7.56672 7.79105 8.01604 8.19881 8.64958 9.17720 9.77623 10.44368 11.35606 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023352 B = 0.005536 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.743289 B = 5056.988088 C = 5789.446192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.093 3.907 4 N -0.582 5.582 5 C 0.541 3.459 6 O -0.557 6.557 7 C -0.221 4.221 8 C -0.050 4.050 9 C -0.118 4.118 10 C -0.123 4.123 11 C 0.125 3.875 12 H 0.096 0.904 13 C -0.156 4.156 14 C 0.173 3.827 15 N -0.600 5.600 16 C -0.222 4.222 17 H 0.076 0.924 18 C -0.003 4.003 19 N -0.919 5.919 20 Si 0.902 3.098 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.282 1.282 24 C 0.124 3.876 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.041 0.959 43 H 0.252 0.748 44 H 0.028 0.972 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.219 -3.604 12.975 14.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C -0.029 4.029 4 N -0.312 5.312 5 C 0.333 3.667 6 O -0.439 6.439 7 C -0.242 4.242 8 C -0.052 4.052 9 C -0.174 4.174 10 C -0.180 4.180 11 C 0.020 3.980 12 H 0.114 0.886 13 C -0.195 4.195 14 C 0.049 3.951 15 N -0.327 5.327 16 C -0.350 4.350 17 H 0.094 0.906 18 C -0.200 4.200 19 N -0.567 5.567 20 Si 0.733 3.267 21 H -0.215 1.215 22 H -0.219 1.219 23 H -0.207 1.207 24 C -0.003 4.003 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.046 0.954 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.624 -3.477 12.845 14.087 hybrid contribution -1.131 -0.316 -0.468 1.264 sum 3.493 -3.793 12.376 13.407 Atomic orbital electron populations 1.21650 0.95570 1.00985 1.02159 1.21884 0.96066 0.97260 1.01525 1.22132 0.78213 0.97695 1.04868 1.47739 1.07341 1.70094 1.05992 1.18561 0.87009 0.76976 0.84167 1.90689 1.13964 1.52536 1.86715 1.22625 1.00261 1.08517 0.92802 1.22478 0.96701 0.91838 0.94214 1.21052 0.91359 1.02570 1.02467 1.20963 1.00022 1.02462 0.94508 1.22195 0.95959 0.96651 0.83167 0.88640 1.23262 1.00792 0.95881 0.99609 1.21222 0.90735 0.85616 0.97502 1.44543 1.17833 1.01968 1.68376 1.18974 0.91882 0.93167 1.30959 0.90593 1.24729 0.98123 0.95463 1.01657 1.69974 1.30481 1.02249 1.53984 0.86244 0.83992 0.78139 0.78338 1.21532 1.21898 1.20726 1.21944 0.90543 0.94811 0.92991 0.90998 0.93499 0.93899 0.90659 0.93723 0.92718 0.85015 0.85551 0.90659 0.93251 0.89404 0.91535 0.91054 0.90746 0.92006 0.91562 0.93123 0.94040 0.93762 0.95410 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 37.16 0.37 -1.98 16 2 C -0.13 -2.15 5.89 -26.73 -0.16 -2.31 16 3 C 0.09 1.65 4.21 -4.04 -0.02 1.63 16 4 N -0.58 -10.40 2.53 -165.06 -0.42 -10.81 16 5 C 0.54 9.43 7.42 -12.67 -0.09 9.33 16 6 O -0.56 -10.70 12.71 5.27 0.07 -10.64 16 7 C -0.22 -3.17 8.06 -37.81 -0.30 -3.47 16 8 C -0.05 -0.62 6.11 -101.16 -0.62 -1.24 16 9 C -0.12 -1.49 8.46 36.01 0.30 -1.18 16 10 C -0.12 -1.10 10.09 36.01 0.36 -0.73 16 11 C 0.12 2.33 3.61 -65.79 -0.24 2.09 16 12 H 0.10 1.78 7.11 -51.93 -0.37 1.41 16 13 C -0.16 -2.99 6.56 -24.90 -0.16 -3.15 16 14 C 0.17 3.98 4.31 -3.07 -0.01 3.96 16 15 N -0.60 -14.00 2.14 -170.08 -0.36 -14.36 16 16 C -0.22 -5.66 10.26 -15.06 -0.15 -5.82 16 17 H 0.08 1.93 7.84 -52.49 -0.41 1.51 16 18 C 0.00 -0.09 5.48 -17.43 -0.10 -0.18 16 19 N -0.92 -25.30 10.36 55.49 0.57 -24.73 16 20 Si 0.90 21.04 29.56 -169.99 -5.02 16.01 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.12 2.50 6.13 -2.53 -0.02 2.48 16 25 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 26 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.41 5.80 -51.93 -0.30 1.11 16 29 H 0.04 0.68 7.08 -51.93 -0.37 0.31 16 30 H 0.05 0.88 6.65 -51.93 -0.35 0.54 16 31 H 0.13 2.80 3.67 -51.93 -0.19 2.61 16 32 H 0.13 1.67 5.87 -52.49 -0.31 1.36 16 33 H 0.07 0.99 8.00 -51.93 -0.42 0.58 16 34 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 35 H 0.09 1.31 6.23 -51.93 -0.32 0.98 16 36 H 0.07 0.56 7.82 -51.93 -0.41 0.15 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 1.26 5.82 -51.93 -0.30 0.96 16 42 H 0.04 1.07 7.60 -51.92 -0.39 0.68 16 43 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.96 6.06 -51.93 -0.31 0.64 16 LS Contribution 342.20 15.07 5.16 5.16 Total: -1.00 -27.91 342.20 -8.23 -36.14 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -7.39 Total: 3.79 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -0.83 Total: -0.57 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.21 Total: -49.90 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.07 Total: -10.64 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.91 -8.23 -36.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714853774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.130 kcal (2) G-P(sol) polarization free energy of solvation -27.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds