Wall clock time and date at job start Tue Mar 31 2020 02:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46824 * 2 1 4 4 N 1.46502 * 109.47272 * 180.02562 * 3 2 1 5 5 C 1.34784 * 119.99492 * 277.35541 * 4 3 2 6 6 O 1.21612 * 119.99217 * 183.95107 * 5 4 3 7 7 C 1.47093 * 119.99932 * 3.94870 * 5 4 3 8 8 C 1.32995 * 119.99816 * 174.21416 * 7 5 4 9 9 C 1.50701 * 120.00056 * 352.59327 * 8 7 5 10 10 C 1.50705 * 120.00290 * 172.59649 * 8 7 5 11 11 C 1.46495 * 120.00258 * 97.08015 * 4 3 2 12 12 H 1.08998 * 110.88482 * 190.76599 * 11 4 3 13 13 C 1.55154 * 111.00491 * 66.88547 * 11 4 3 14 14 C 1.54323 * 102.94290 * 277.42869 * 13 11 4 15 15 N 1.47017 * 107.27122 * 337.80621 * 14 13 11 16 16 C 1.36942 * 125.65137 * 178.98841 * 15 14 13 17 17 H 1.07996 * 119.99871 * 175.09610 * 16 15 14 18 18 C 1.38813 * 119.99678 * 355.09566 * 16 15 14 19 19 N 1.31625 * 120.00170 * 6.95494 * 18 16 15 20 20 Si 1.86804 * 119.99901 * 186.95535 * 18 16 15 21 21 H 1.48498 * 109.46774 * 94.98875 * 20 18 16 22 22 H 1.48496 * 109.46744 * 214.98863 * 20 18 16 23 23 H 1.48497 * 109.47147 * 334.99072 * 20 18 16 24 24 C 1.47425 * 108.70349 * 358.94045 * 15 14 13 25 25 H 1.09006 * 109.47319 * 60.00653 * 1 2 3 26 26 H 1.09008 * 109.46652 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47687 * 300.00199 * 1 2 3 28 28 H 1.08995 * 109.47264 * 240.00124 * 2 1 3 29 29 H 1.08993 * 109.47304 * 119.99634 * 2 1 3 30 30 H 1.08998 * 109.47663 * 59.99541 * 3 2 1 31 31 H 1.09004 * 109.47299 * 300.00107 * 3 2 1 32 32 H 1.07997 * 120.00414 * 354.21425 * 7 5 4 33 33 H 1.09001 * 109.47297 * 83.42646 * 9 8 7 34 34 H 1.09001 * 109.47309 * 203.43194 * 9 8 7 35 35 H 1.09003 * 109.47269 * 323.43100 * 9 8 7 36 36 H 1.09001 * 109.46694 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.47218 * 120.00021 * 10 8 7 38 38 H 1.08997 * 109.46744 * 240.00193 * 10 8 7 39 39 H 1.09001 * 110.72176 * 35.79187 * 13 11 4 40 40 H 1.08999 * 110.72592 * 159.06194 * 13 11 4 41 41 H 1.08995 * 109.88505 * 97.22421 * 14 13 11 42 42 H 1.09007 * 109.88189 * 218.38911 * 14 13 11 43 43 H 0.96996 * 119.99916 * 180.02562 * 19 18 16 44 44 H 1.09000 * 110.36807 * 265.29349 * 24 15 14 45 45 H 1.09000 * 110.36501 * 142.96492 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1792 1.2931 1.1568 6 8 5.3932 1.3650 1.1668 7 6 3.4468 1.0430 2.4076 8 6 4.1141 0.7812 3.5279 9 6 5.6064 0.5756 3.4856 10 6 3.3779 0.6901 4.8398 11 6 4.2369 1.5993 -1.2599 12 1 5.2977 1.3904 -1.1213 13 6 4.0222 3.0158 -1.8555 14 6 2.6718 2.8808 -2.5902 15 7 2.4678 1.4519 -2.8695 16 6 1.3763 0.9083 -3.4928 17 1 1.3557 -0.1466 -3.7230 18 6 0.2966 1.7134 -3.8288 19 7 0.3752 3.0182 -3.6743 20 14 -1.2682 0.9450 -4.5001 21 1 -2.2292 0.7281 -3.3890 22 1 -1.8728 1.8532 -5.5075 23 1 -0.9463 -0.3571 -5.1374 24 6 3.6334 0.7011 -2.3684 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8899 30 1 1.6765 1.9564 0.8899 31 1 1.6765 1.9564 -0.8900 32 1 2.3673 1.0719 2.4164 33 1 6.1073 1.5434 3.5081 34 1 5.9165 -0.0143 4.3482 35 1 5.8748 0.0489 2.5698 36 1 2.3152 0.8663 4.6729 37 1 3.5192 -0.3024 5.2676 38 1 3.7667 1.4410 5.5275 39 1 3.9573 3.7615 -1.0632 40 1 4.8193 3.2645 -2.5561 41 1 1.8665 3.2534 -1.9572 42 1 2.7008 3.4408 -3.5250 43 1 -0.3794 3.5806 -3.9087 44 1 4.3579 0.5471 -3.1681 45 1 3.3179 -0.2554 -1.9516 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714853774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:15 Heat of formation + Delta-G solvation = -4.549615 kcal Electronic energy + Delta-G solvation = -23812.635322 eV Core-core repulsion = 20637.915399 eV Total energy + Delta-G solvation = -3174.719923 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.39565 -39.29201 -36.43277 -36.25607 -34.57607 -33.13993 -31.02179 -29.68165 -28.62183 -28.44061 -27.14598 -25.96569 -23.13438 -22.30949 -21.91580 -20.38572 -19.01252 -18.79222 -18.48364 -17.01614 -16.63069 -16.17517 -15.67377 -15.60162 -15.30637 -15.04934 -14.78266 -14.54737 -14.00712 -13.86932 -13.77232 -13.52836 -13.29537 -13.13696 -13.04381 -12.87435 -12.82430 -12.62032 -12.47960 -12.47167 -12.30401 -12.01091 -11.96885 -11.82926 -11.73893 -11.50951 -11.20240 -10.62630 -10.40741 -10.05461 -9.43014 -8.79019 -7.78357 -5.10787 0.46404 1.48978 1.50580 1.57705 2.15819 2.35175 2.53752 3.42014 3.61777 3.74246 3.93097 3.97539 4.04175 4.13221 4.28687 4.30470 4.38011 4.49559 4.59876 4.64920 4.72118 4.73525 4.76046 4.83172 4.85600 4.95669 4.98153 4.99862 5.04768 5.09026 5.10813 5.23543 5.28942 5.48053 5.51633 5.53987 5.62059 5.66740 5.67715 5.82389 5.87202 6.23487 6.64602 7.16689 7.30266 7.82306 8.48291 9.32296 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023352 B = 0.005536 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.743289 B = 5056.988088 C = 5789.446192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C 0.101 3.899 4 N -0.587 5.587 5 C 0.537 3.463 6 O -0.581 6.581 7 C -0.249 4.249 8 C -0.028 4.028 9 C -0.120 4.120 10 C -0.122 4.122 11 C 0.134 3.866 12 H 0.101 0.899 13 C -0.143 4.143 14 C 0.189 3.811 15 N -0.608 5.608 16 C -0.221 4.221 17 H 0.076 0.924 18 C -0.049 4.049 19 N -0.946 5.946 20 Si 0.957 3.043 21 H -0.284 1.284 22 H -0.302 1.302 23 H -0.274 1.274 24 C 0.125 3.875 25 H 0.034 0.966 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.139 0.861 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.027 0.973 42 H 0.004 0.996 43 H 0.245 0.755 44 H 0.033 0.967 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.318 -4.877 15.471 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C -0.022 4.022 4 N -0.316 5.316 5 C 0.331 3.669 6 O -0.465 6.465 7 C -0.270 4.270 8 C -0.030 4.030 9 C -0.176 4.176 10 C -0.178 4.178 11 C 0.029 3.971 12 H 0.119 0.881 13 C -0.182 4.182 14 C 0.064 3.936 15 N -0.335 5.335 16 C -0.349 4.349 17 H 0.094 0.906 18 C -0.243 4.243 19 N -0.595 5.595 20 Si 0.787 3.213 21 H -0.211 1.211 22 H -0.229 1.229 23 H -0.199 1.199 24 C -0.001 4.001 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.157 0.843 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.045 0.955 42 H 0.023 0.977 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.736 -4.778 15.353 16.762 hybrid contribution -1.065 0.042 -1.168 1.581 sum 3.671 -4.735 14.185 15.398 Atomic orbital electron populations 1.21586 0.95070 1.01734 1.01375 1.21772 0.96358 0.96392 1.01252 1.21968 0.78130 0.98169 1.03909 1.47769 1.07331 1.70582 1.05940 1.19100 0.86920 0.76144 0.84755 1.90679 1.15014 1.53697 1.87082 1.22553 1.00739 1.11796 0.91876 1.22886 0.96607 0.88278 0.95212 1.21035 0.91733 1.02295 1.02539 1.21061 1.00087 1.04096 0.92575 1.22027 0.96204 0.95492 0.83352 0.88060 1.23132 0.98869 0.96612 0.99615 1.20913 0.92096 0.85003 0.95572 1.44638 1.18223 1.02493 1.68114 1.19181 0.92533 0.93146 1.30078 0.90594 1.25324 1.00491 0.95781 1.02683 1.70157 1.30654 1.03258 1.55428 0.85370 0.81015 0.77397 0.77495 1.21098 1.22916 1.19879 1.22013 0.89557 0.94908 0.93574 0.94675 0.91975 0.91697 0.93102 0.91606 0.90955 0.88592 0.84335 0.91412 0.90303 0.91900 0.90724 0.89109 0.89082 0.91433 0.90184 0.95481 0.97733 0.94578 0.94895 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 9.91 71.98 0.71 -3.62 16 2 C -0.12 -3.85 5.89 30.59 0.18 -3.67 16 3 C 0.10 3.51 4.21 86.38 0.36 3.88 16 4 N -0.59 -20.58 2.53 -794.37 -2.01 -22.59 16 5 C 0.54 18.08 7.42 86.57 0.64 18.72 16 6 O -0.58 -21.88 12.71 -4.07 -0.05 -21.94 16 7 C -0.25 -6.55 8.06 23.43 0.19 -6.37 16 8 C -0.03 -0.60 6.11 -17.61 -0.11 -0.71 16 9 C -0.12 -2.73 8.46 71.24 0.60 -2.13 16 10 C -0.12 -1.64 10.09 71.24 0.72 -0.92 16 11 C 0.13 4.97 3.61 46.38 0.17 5.14 16 12 H 0.10 3.69 7.11 -2.39 -0.02 3.67 16 13 C -0.14 -5.49 6.56 31.78 0.21 -5.28 16 14 C 0.19 8.95 4.31 86.73 0.37 9.32 16 15 N -0.61 -28.97 2.14 -692.00 -1.48 -30.45 16 16 C -0.22 -11.47 10.26 84.03 0.86 -10.60 16 17 H 0.08 3.88 7.84 -2.91 -0.02 3.86 16 18 C -0.05 -2.64 5.48 84.86 0.46 -2.17 16 19 N -0.95 -53.87 10.36 21.65 0.22 -53.65 16 20 Si 0.96 43.92 29.56 68.60 2.03 45.95 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 24 C 0.13 5.06 6.13 86.85 0.53 5.60 16 25 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.05 1.89 5.80 -2.39 -0.01 1.87 16 29 H 0.07 1.85 7.08 -2.39 -0.02 1.83 16 30 H 0.07 2.24 6.65 -2.39 -0.02 2.23 16 31 H 0.10 4.16 3.67 -2.39 -0.01 4.16 16 32 H 0.14 3.25 5.87 -2.91 -0.02 3.23 16 33 H 0.07 1.67 8.00 -2.39 -0.02 1.66 16 34 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 35 H 0.06 1.79 6.23 -2.39 -0.01 1.78 16 36 H 0.07 0.93 7.82 -2.39 -0.02 0.91 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.03 1.42 5.82 -2.39 -0.01 1.40 16 42 H 0.00 0.24 7.60 -2.38 -0.02 0.22 16 43 H 0.24 13.78 8.31 -92.71 -0.77 13.01 16 44 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.05 2.00 6.06 -2.39 -0.01 1.99 16 Total: -1.00 -61.71 342.20 5.59 -56.13 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.96 Total: 19.37 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 5.91 Total: 7.18 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -3.27 Total: -106.69 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.05 Total: -21.94 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -61.71 5.59 -56.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714853774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.576 kcal (2) G-P(sol) polarization free energy of solvation -61.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds