Wall clock time and date at job start Tue Mar 31 2020 02:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47059 * 2 1 4 4 N 1.46500 * 109.47105 * 180.02562 * 3 2 1 5 5 C 1.34776 * 119.99826 * 270.00005 * 4 3 2 6 6 O 1.21281 * 120.00438 * 180.02562 * 5 4 3 7 7 C 1.50704 * 120.00095 * 359.97438 * 5 4 3 8 8 C 1.52999 * 109.47313 * 180.02562 * 7 5 4 9 9 C 1.53001 * 117.49881 * 243.74990 * 8 7 5 10 10 C 1.52995 * 117.49721 * 175.09047 * 8 7 5 11 11 C 1.46499 * 120.00160 * 89.99455 * 4 3 2 12 12 H 1.08996 * 110.91722 * 356.10338 * 11 4 3 13 13 C 1.55164 * 111.00022 * 120.00230 * 11 4 3 14 14 C 1.54323 * 102.93863 * 153.57905 * 13 11 4 15 15 N 1.47019 * 107.27318 * 337.79949 * 14 13 11 16 16 C 1.36938 * 125.65122 * 178.98546 * 15 14 13 17 17 H 1.08002 * 120.00486 * 174.79283 * 16 15 14 18 18 C 1.38812 * 119.99767 * 354.79553 * 16 15 14 19 19 N 1.31616 * 120.00249 * 7.04853 * 18 16 15 20 20 Si 1.86806 * 119.99937 * 187.05227 * 18 16 15 21 21 H 1.48491 * 109.47268 * 94.98888 * 20 18 16 22 22 H 1.48503 * 109.46989 * 214.98713 * 20 18 16 23 23 H 1.48497 * 109.46914 * 334.98623 * 20 18 16 24 24 C 1.47427 * 108.70318 * 358.95111 * 15 14 13 25 25 H 1.08998 * 109.46940 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47271 * 300.00259 * 1 2 3 27 27 H 1.09005 * 109.46982 * 60.00102 * 1 2 3 28 28 H 1.08998 * 109.47271 * 239.99741 * 2 1 3 29 29 H 1.08998 * 109.46999 * 119.99222 * 2 1 3 30 30 H 1.08998 * 109.47291 * 59.99752 * 3 2 1 31 31 H 1.09005 * 109.47140 * 299.99801 * 3 2 1 32 32 H 1.09002 * 109.46890 * 300.00673 * 7 5 4 33 33 H 1.09006 * 109.46629 * 60.00264 * 7 5 4 34 34 H 1.08997 * 115.55137 * 29.41616 * 8 7 5 35 35 H 1.09001 * 117.49510 * 359.97438 * 9 8 7 36 36 H 1.08999 * 117.49745 * 145.01918 * 9 8 7 37 37 H 1.09005 * 117.49602 * 214.97790 * 10 8 7 38 38 H 1.08997 * 117.50161 * 359.97438 * 10 8 7 39 39 H 1.08999 * 110.71826 * 271.93471 * 13 11 4 40 40 H 1.08991 * 110.72168 * 35.21454 * 13 11 4 41 41 H 1.08998 * 109.88789 * 97.22253 * 14 13 11 42 42 H 1.09009 * 109.87872 * 218.38762 * 14 13 11 43 43 H 0.96999 * 120.00130 * 179.97438 * 19 18 16 44 44 H 1.09006 * 110.36168 * 265.28332 * 24 15 14 45 45 H 1.08991 * 110.36898 * 142.96842 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1793 1.4424 1.1663 6 8 5.3922 1.4428 1.1659 7 6 3.4264 1.4427 2.4718 8 6 4.4210 1.4431 3.6343 9 6 4.4242 0.2262 4.5617 10 6 3.8529 1.5597 5.0500 11 6 4.2370 1.4426 -1.2696 12 1 3.5516 1.3735 -2.1142 13 6 5.1423 2.6971 -1.3893 14 6 6.2652 2.2239 -2.3363 15 7 6.3049 0.7558 -2.2670 16 6 7.1519 -0.0540 -2.9754 17 1 7.1605 -1.1184 -2.7923 18 6 7.9994 0.4930 -3.9289 19 7 8.0907 1.7999 -4.0562 20 14 9.0106 -0.6256 -5.0316 21 1 8.2892 -0.8428 -6.3113 22 1 10.3258 0.0072 -5.3060 23 1 9.2206 -1.9302 -4.3541 24 6 5.2823 0.3000 -1.3078 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 2.8000 2.3329 2.5296 33 1 2.7994 0.5529 2.5298 34 1 5.3775 1.9260 3.4345 35 1 3.7174 -0.5744 4.3438 36 1 5.3828 -0.0912 4.9723 37 1 4.4358 2.1190 5.7818 38 1 2.7705 1.6365 5.1533 39 1 4.5922 3.5291 -1.8290 40 1 5.5490 2.9734 -0.4166 41 1 6.0483 2.5411 -3.3563 42 1 7.2210 2.6362 -2.0129 43 1 8.6832 2.1821 -4.7222 44 1 5.7242 0.1570 -0.3216 45 1 4.8213 -0.6244 -1.6554 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714853813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:57 Heat of formation + Delta-G solvation = 13.279134 kcal Electronic energy + Delta-G solvation = -23027.888374 eV Core-core repulsion = 19853.941564 eV Total energy + Delta-G solvation = -3173.946810 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.14348 -37.56579 -36.36245 -35.91376 -32.98957 -31.81209 -29.79995 -28.79812 -27.14182 -25.81642 -24.31717 -22.47342 -22.12516 -21.38809 -20.18925 -19.95176 -18.58233 -17.00123 -16.74029 -15.91811 -15.57566 -14.99178 -14.69890 -14.49813 -14.11548 -13.93804 -13.55014 -13.44914 -13.06761 -12.55366 -12.29603 -12.17898 -12.16357 -11.86100 -11.66825 -11.62494 -11.44973 -11.29222 -10.87192 -10.84976 -10.76294 -10.55478 -10.41962 -10.20086 -10.05572 -9.98853 -9.80657 -9.59394 -8.98284 -8.47894 -8.24161 -6.64937 -5.60569 -2.91444 2.93228 3.17541 3.46989 3.51794 3.54299 3.74539 4.50620 4.61148 4.64728 4.75787 4.81622 4.88569 5.02745 5.14543 5.26996 5.37132 5.41933 5.46015 5.51533 5.52528 5.55871 5.59267 5.67560 5.73316 5.81736 5.85751 5.88104 5.93887 5.99570 6.01662 6.16171 6.27840 6.34103 6.58199 6.67727 6.77494 6.82593 7.33049 7.67448 7.73186 7.79164 7.94669 8.37926 8.55183 9.33955 9.94873 10.62852 11.51654 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018249 B = 0.004578 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.951742 B = 6115.075652 C = 6853.846675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C 0.110 3.890 4 N -0.606 5.606 5 C 0.509 3.491 6 O -0.513 6.513 7 C -0.109 4.109 8 C -0.138 4.138 9 C -0.178 4.178 10 C -0.183 4.183 11 C 0.131 3.869 12 H 0.088 0.912 13 C -0.152 4.152 14 C 0.184 3.816 15 N -0.602 5.602 16 C -0.222 4.222 17 H 0.076 0.924 18 C -0.009 4.009 19 N -0.921 5.921 20 Si 0.909 3.091 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.125 3.875 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.039 0.961 43 H 0.251 0.749 44 H 0.050 0.950 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.994 0.287 13.830 21.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.014 4.014 4 N -0.339 5.339 5 C 0.297 3.703 6 O -0.388 6.388 7 C -0.149 4.149 8 C -0.156 4.156 9 C -0.215 4.215 10 C -0.220 4.220 11 C 0.028 3.972 12 H 0.106 0.894 13 C -0.192 4.192 14 C 0.059 3.941 15 N -0.329 5.329 16 C -0.351 4.351 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.002 4.002 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.137 0.863 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -16.156 0.315 13.663 21.161 hybrid contribution 0.402 -0.576 -0.693 0.987 sum -15.753 -0.261 12.970 20.408 Atomic orbital electron populations 1.21704 0.95292 1.01886 1.01795 1.22007 0.95856 0.97468 1.03096 1.21639 0.80038 0.96726 1.02987 1.47992 1.05966 1.73706 1.06267 1.20454 0.88232 0.76651 0.84969 1.90740 1.13654 1.47534 1.86857 1.21293 0.98059 1.03642 0.91910 1.22084 1.01119 1.03029 0.89364 1.23015 1.02753 0.91534 1.04179 1.22988 1.00636 1.01015 0.97368 1.22384 0.93284 0.98263 0.83279 0.89350 1.23214 0.98301 0.95940 1.01708 1.21054 0.93944 0.83610 0.95476 1.44323 1.38578 1.02151 1.47829 1.19059 1.13509 0.90013 1.12488 0.90599 1.24795 1.00169 0.95924 0.99649 1.69989 1.41307 1.08771 1.36851 0.86127 0.79349 0.79578 0.80955 1.21746 1.21831 1.20703 1.21929 0.89554 0.93544 0.95190 0.92557 0.92752 0.92515 0.91143 0.91837 0.90661 0.90356 0.89004 0.89221 0.86298 0.89005 0.88798 0.88845 0.89000 0.92812 0.90979 0.93704 0.94232 0.93908 0.93263 0.95288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.70 16 2 C -0.15 -1.36 6.26 -26.73 -0.17 -1.53 16 3 C 0.11 1.11 5.19 -4.04 -0.02 1.09 16 4 N -0.61 -8.88 2.56 -163.67 -0.42 -9.30 16 5 C 0.51 7.97 6.96 -10.98 -0.08 7.90 16 6 O -0.51 -10.50 11.61 5.56 0.06 -10.43 16 7 C -0.11 -1.20 4.53 -27.88 -0.13 -1.33 16 8 C -0.14 -1.61 5.41 -90.62 -0.49 -2.10 16 9 C -0.18 -1.83 10.18 -26.69 -0.27 -2.10 16 10 C -0.18 -1.65 10.25 -26.70 -0.27 -1.93 16 11 C 0.13 2.45 3.54 -65.78 -0.23 2.21 16 12 H 0.09 1.55 7.92 -51.93 -0.41 1.14 16 13 C -0.15 -3.17 6.33 -24.89 -0.16 -3.33 16 14 C 0.18 4.84 5.38 -3.07 -0.02 4.82 16 15 N -0.60 -16.59 3.39 -170.07 -0.58 -17.16 16 16 C -0.22 -6.58 10.27 -15.06 -0.15 -6.73 16 17 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 18 C -0.01 -0.28 5.48 -17.43 -0.10 -0.37 16 19 N -0.92 -28.30 10.36 55.49 0.57 -27.73 16 20 Si 0.91 22.99 29.56 -169.99 -5.02 17.96 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.12 2.86 6.58 -2.53 -0.02 2.85 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.60 7.22 -51.93 -0.37 0.23 16 30 H 0.08 0.59 6.44 -51.93 -0.33 0.26 16 31 H 0.08 0.74 7.99 -51.93 -0.41 0.33 16 32 H 0.09 0.82 7.40 -51.93 -0.38 0.44 16 33 H 0.09 0.84 6.92 -51.93 -0.36 0.48 16 34 H 0.12 1.69 7.31 -51.93 -0.38 1.31 16 35 H 0.09 0.86 8.03 -51.93 -0.42 0.44 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.58 6.25 -51.93 -0.32 1.25 16 41 H 0.04 1.26 7.30 -51.93 -0.38 0.88 16 42 H 0.04 1.16 7.61 -51.92 -0.40 0.77 16 43 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.05 1.23 5.53 -51.93 -0.29 0.94 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 350.42 15.07 5.28 5.28 Total: -1.00 -33.89 350.42 -9.65 -43.54 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.81 Total: -0.90 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -1.73 Total: -1.25 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.42 Total: -54.19 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.06 Total: -10.43 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.89 -9.65 -43.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714853813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.816 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds