Wall clock time and date at job start Tue Mar 31 2020 02:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47059 * 2 1 4 4 N 1.46500 * 109.47105 * 180.02562 * 3 2 1 5 5 C 1.34776 * 119.99826 * 270.00005 * 4 3 2 6 6 O 1.21281 * 120.00438 * 180.02562 * 5 4 3 7 7 C 1.50704 * 120.00095 * 359.97438 * 5 4 3 8 8 C 1.52999 * 109.47313 * 180.02562 * 7 5 4 9 9 C 1.53001 * 117.49881 * 243.74990 * 8 7 5 10 10 C 1.52995 * 117.49721 * 175.09047 * 8 7 5 11 11 C 1.46499 * 120.00160 * 89.99455 * 4 3 2 12 12 H 1.08996 * 110.91722 * 356.10338 * 11 4 3 13 13 C 1.55164 * 111.00022 * 120.00230 * 11 4 3 14 14 C 1.54323 * 102.93863 * 153.57905 * 13 11 4 15 15 N 1.47019 * 107.27318 * 337.79949 * 14 13 11 16 16 C 1.36938 * 125.65122 * 178.98546 * 15 14 13 17 17 H 1.08002 * 120.00486 * 174.79283 * 16 15 14 18 18 C 1.38812 * 119.99767 * 354.79553 * 16 15 14 19 19 N 1.31616 * 120.00249 * 7.04853 * 18 16 15 20 20 Si 1.86806 * 119.99937 * 187.05227 * 18 16 15 21 21 H 1.48491 * 109.47268 * 94.98888 * 20 18 16 22 22 H 1.48503 * 109.46989 * 214.98713 * 20 18 16 23 23 H 1.48497 * 109.46914 * 334.98623 * 20 18 16 24 24 C 1.47427 * 108.70318 * 358.95111 * 15 14 13 25 25 H 1.08998 * 109.46940 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47271 * 300.00259 * 1 2 3 27 27 H 1.09005 * 109.46982 * 60.00102 * 1 2 3 28 28 H 1.08998 * 109.47271 * 239.99741 * 2 1 3 29 29 H 1.08998 * 109.46999 * 119.99222 * 2 1 3 30 30 H 1.08998 * 109.47291 * 59.99752 * 3 2 1 31 31 H 1.09005 * 109.47140 * 299.99801 * 3 2 1 32 32 H 1.09002 * 109.46890 * 300.00673 * 7 5 4 33 33 H 1.09006 * 109.46629 * 60.00264 * 7 5 4 34 34 H 1.08997 * 115.55137 * 29.41616 * 8 7 5 35 35 H 1.09001 * 117.49510 * 359.97438 * 9 8 7 36 36 H 1.08999 * 117.49745 * 145.01918 * 9 8 7 37 37 H 1.09005 * 117.49602 * 214.97790 * 10 8 7 38 38 H 1.08997 * 117.50161 * 359.97438 * 10 8 7 39 39 H 1.08999 * 110.71826 * 271.93471 * 13 11 4 40 40 H 1.08991 * 110.72168 * 35.21454 * 13 11 4 41 41 H 1.08998 * 109.88789 * 97.22253 * 14 13 11 42 42 H 1.09009 * 109.87872 * 218.38762 * 14 13 11 43 43 H 0.96999 * 120.00130 * 179.97438 * 19 18 16 44 44 H 1.09006 * 110.36168 * 265.28332 * 24 15 14 45 45 H 1.08991 * 110.36898 * 142.96842 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1793 1.4424 1.1663 6 8 5.3922 1.4428 1.1659 7 6 3.4264 1.4427 2.4718 8 6 4.4210 1.4431 3.6343 9 6 4.4242 0.2262 4.5617 10 6 3.8529 1.5597 5.0500 11 6 4.2370 1.4426 -1.2696 12 1 3.5516 1.3735 -2.1142 13 6 5.1423 2.6971 -1.3893 14 6 6.2652 2.2239 -2.3363 15 7 6.3049 0.7558 -2.2670 16 6 7.1519 -0.0540 -2.9754 17 1 7.1605 -1.1184 -2.7923 18 6 7.9994 0.4930 -3.9289 19 7 8.0907 1.7999 -4.0562 20 14 9.0106 -0.6256 -5.0316 21 1 8.2892 -0.8428 -6.3113 22 1 10.3258 0.0072 -5.3060 23 1 9.2206 -1.9302 -4.3541 24 6 5.2823 0.3000 -1.3078 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 2.8000 2.3329 2.5296 33 1 2.7994 0.5529 2.5298 34 1 5.3775 1.9260 3.4345 35 1 3.7174 -0.5744 4.3438 36 1 5.3828 -0.0912 4.9723 37 1 4.4358 2.1190 5.7818 38 1 2.7705 1.6365 5.1533 39 1 4.5922 3.5291 -1.8290 40 1 5.5490 2.9734 -0.4166 41 1 6.0483 2.5411 -3.3563 42 1 7.2210 2.6362 -2.0129 43 1 8.6832 2.1821 -4.7222 44 1 5.7242 0.1570 -0.3216 45 1 4.8213 -0.6244 -1.6554 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714853813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:56 Heat of formation + Delta-G solvation = -7.042692 kcal Electronic energy + Delta-G solvation = -23028.769595 eV Core-core repulsion = 19853.941564 eV Total energy + Delta-G solvation = -3174.828031 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.42035 -38.85605 -37.71674 -37.05591 -34.60695 -33.25903 -31.32640 -30.41720 -28.70910 -26.89743 -26.25076 -23.34119 -23.15972 -22.37967 -21.99198 -21.30940 -19.82024 -18.90865 -18.05362 -17.18671 -16.75512 -16.59923 -16.15467 -15.74135 -15.50820 -14.96668 -14.91117 -14.48365 -14.38405 -14.15421 -13.89772 -13.65106 -13.38335 -12.97183 -12.93097 -12.79453 -12.74763 -12.37197 -12.33796 -12.21133 -12.04544 -12.02673 -11.96309 -11.85801 -11.67949 -11.46946 -11.22492 -10.84422 -10.70358 -10.37639 -9.57511 -8.85953 -7.87411 -5.22476 1.42669 1.45935 1.55029 1.74815 2.00278 2.49172 2.95103 3.29650 3.55889 3.72938 3.80714 3.91066 3.99953 4.05103 4.08765 4.20021 4.23433 4.26168 4.44115 4.58168 4.61029 4.64312 4.69614 4.72585 4.77408 4.82642 4.85819 4.94089 4.99319 5.04901 5.09038 5.12860 5.28371 5.30130 5.33081 5.39616 5.40520 5.53456 5.62525 5.68928 5.80162 6.17149 6.57345 7.07327 7.35974 7.74702 8.41422 9.23717 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018249 B = 0.004578 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.951742 B = 6115.075652 C = 6853.846675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.142 4.142 3 C 0.104 3.896 4 N -0.602 5.602 5 C 0.501 3.499 6 O -0.572 6.572 7 C -0.094 4.094 8 C -0.164 4.164 9 C -0.186 4.186 10 C -0.155 4.155 11 C 0.152 3.848 12 H 0.107 0.893 13 C -0.136 4.136 14 C 0.194 3.806 15 N -0.623 5.623 16 C -0.247 4.247 17 H 0.077 0.923 18 C -0.065 4.065 19 N -0.951 5.951 20 Si 0.983 3.017 21 H -0.280 1.280 22 H -0.293 1.293 23 H -0.270 1.270 24 C 0.123 3.877 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.021 0.979 42 H -0.009 1.009 43 H 0.248 0.752 44 H 0.029 0.971 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.284 -0.120 14.888 25.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.181 4.181 3 C -0.017 4.017 4 N -0.333 5.333 5 C 0.291 3.709 6 O -0.451 6.451 7 C -0.133 4.133 8 C -0.183 4.183 9 C -0.223 4.223 10 C -0.192 4.192 11 C 0.047 3.953 12 H 0.125 0.875 13 C -0.176 4.176 14 C 0.068 3.932 15 N -0.350 5.350 16 C -0.376 4.376 17 H 0.095 0.905 18 C -0.258 4.258 19 N -0.600 5.600 20 Si 0.810 3.190 21 H -0.207 1.207 22 H -0.220 1.220 23 H -0.195 1.195 24 C -0.003 4.003 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.141 0.859 33 H 0.133 0.867 34 H 0.099 0.901 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.137 0.863 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.039 0.961 42 H 0.010 0.990 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -19.517 -0.106 14.749 24.463 hybrid contribution 1.461 -0.468 -0.961 1.810 sum -18.056 -0.574 13.788 22.726 Atomic orbital electron populations 1.21664 0.93208 1.02338 1.02908 1.21956 0.97536 0.96606 1.01996 1.22020 0.76625 0.97772 1.05320 1.48041 1.07890 1.72995 1.04418 1.21406 0.87863 0.75060 0.86574 1.90728 1.16535 1.50103 1.87744 1.21296 0.97567 1.06186 0.88254 1.21991 1.00448 1.04522 0.91337 1.23111 1.02984 0.92272 1.03945 1.23084 1.02088 0.99155 0.94860 1.21974 0.92669 0.94495 0.86152 0.87462 1.22996 0.97089 0.97839 0.99627 1.20785 0.93783 0.83306 0.95289 1.44645 1.39452 1.02642 1.48245 1.19450 1.14428 0.90531 1.13171 0.90474 1.25715 1.01534 0.97510 1.01039 1.70221 1.41963 1.10570 1.37230 0.85002 0.77287 0.77840 0.78847 1.20699 1.21968 1.19479 1.21989 0.89819 0.95561 0.92973 0.92513 0.90843 0.92199 0.93467 0.91882 0.87231 0.89162 0.85868 0.86674 0.90053 0.87630 0.89826 0.88494 0.86297 0.89787 0.92287 0.96126 0.99033 0.94294 0.95298 0.94878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.91 71.98 0.71 -0.78 16 2 C -0.14 -2.21 6.26 30.60 0.19 -2.02 16 3 C 0.10 1.70 5.19 86.38 0.45 2.14 16 4 N -0.60 -16.52 2.56 -790.12 -2.02 -18.55 16 5 C 0.50 15.24 6.96 87.66 0.61 15.85 16 6 O -0.57 -24.34 11.61 -3.03 -0.04 -24.38 16 7 C -0.09 -1.80 4.53 29.85 0.14 -1.66 16 8 C -0.16 -3.67 5.41 -10.80 -0.06 -3.72 16 9 C -0.19 -3.55 10.18 30.62 0.31 -3.24 16 10 C -0.16 -2.35 10.25 30.62 0.31 -2.04 16 11 C 0.15 5.58 3.54 46.38 0.16 5.74 16 12 H 0.11 3.56 7.92 -2.39 -0.02 3.55 16 13 C -0.14 -5.74 6.33 31.78 0.20 -5.54 16 14 C 0.19 10.70 5.38 86.73 0.47 11.17 16 15 N -0.62 -35.77 3.39 -691.99 -2.35 -38.12 16 16 C -0.25 -15.11 10.27 84.03 0.86 -14.25 16 17 H 0.08 4.55 7.84 -2.91 -0.02 4.53 16 18 C -0.07 -3.95 5.48 84.86 0.46 -3.49 16 19 N -0.95 -60.76 10.36 21.65 0.22 -60.53 16 20 Si 0.98 48.26 29.56 68.60 2.03 50.28 16 21 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 22 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 23 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 24 C 0.12 5.79 6.58 86.85 0.57 6.36 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 26 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.99 7.22 -2.39 -0.02 0.97 16 30 H 0.11 1.11 6.44 -2.39 -0.02 1.09 16 31 H 0.09 1.33 7.99 -2.38 -0.02 1.31 16 32 H 0.12 1.60 7.40 -2.39 -0.02 1.58 16 33 H 0.12 1.65 6.92 -2.38 -0.02 1.64 16 34 H 0.08 2.45 7.31 -2.39 -0.02 2.43 16 35 H 0.11 1.70 8.03 -2.39 -0.02 1.68 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.06 2.66 6.25 -2.39 -0.01 2.64 16 41 H 0.02 1.22 7.30 -2.39 -0.02 1.20 16 42 H -0.01 -0.55 7.61 -2.38 -0.02 -0.56 16 43 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 44 H 0.03 1.51 5.53 -2.38 -0.01 1.50 16 45 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -79.75 350.42 4.19 -75.56 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.95 Total: 11.21 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 5.40 Total: 4.51 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -4.15 Total: -117.19 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.04 Total: -24.38 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.28 kcal Total: -79.75 4.19 -75.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714853813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.517 kcal (2) G-P(sol) polarization free energy of solvation -79.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds