Wall clock time and date at job start Tue Mar 31 2020 02:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47247 * 2 1 4 4 N 1.46504 * 109.46885 * 119.99753 * 2 1 3 5 5 C 1.46500 * 119.99824 * 119.84717 * 4 2 1 6 6 C 1.52995 * 109.47376 * 261.60136 * 5 4 2 7 7 N 1.46496 * 109.47011 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00298 * 269.99882 * 7 6 5 9 9 C 1.36942 * 120.00020 * 90.00644 * 7 6 5 10 10 H 1.08006 * 119.99871 * 17.40525 * 9 7 6 11 11 C 1.38812 * 120.00394 * 197.41368 * 9 7 6 12 12 N 1.31629 * 119.99562 * 16.49122 * 11 9 7 13 13 Si 1.86794 * 120.00386 * 196.49655 * 11 9 7 14 14 H 1.48491 * 109.47522 * 94.98010 * 13 11 9 15 15 H 1.48500 * 109.47017 * 214.98589 * 13 11 9 16 16 H 1.48507 * 109.46745 * 334.98035 * 13 11 9 17 17 C 1.34773 * 119.99911 * 299.84965 * 4 2 1 18 18 O 1.21617 * 120.00411 * 3.54418 * 17 4 2 19 19 C 1.47109 * 119.99895 * 183.54071 * 17 4 2 20 20 C 1.32611 * 124.62208 * 204.64137 * 19 17 4 21 21 C 1.51113 * 110.75941 * 179.73877 * 20 19 17 22 22 C 1.54572 * 104.83655 * 16.84259 * 21 20 19 23 23 C 1.51114 * 124.61962 * 24.78877 * 19 17 4 24 24 H 1.08997 * 109.47078 * 303.22351 * 1 2 3 25 25 H 1.08998 * 109.46621 * 63.22039 * 1 2 3 26 26 H 1.08990 * 109.47237 * 183.22294 * 1 2 3 27 27 H 1.08992 * 109.47313 * 239.99666 * 2 1 3 28 28 H 1.09004 * 109.47285 * 182.09617 * 3 2 1 29 29 H 1.08999 * 109.47024 * 302.09757 * 3 2 1 30 30 H 1.09000 * 109.47276 * 62.09647 * 3 2 1 31 31 H 1.08998 * 109.47148 * 21.60589 * 5 4 2 32 32 H 1.09007 * 109.46906 * 141.60461 * 5 4 2 33 33 H 1.08998 * 109.47352 * 300.00329 * 6 5 4 34 34 H 1.08997 * 109.46965 * 60.00207 * 6 5 4 35 35 H 1.09000 * 109.46926 * 93.37863 * 8 7 6 36 36 H 1.08998 * 109.47482 * 213.37195 * 8 7 6 37 37 H 1.08994 * 109.47130 * 333.37732 * 8 7 6 38 38 H 0.97003 * 119.99236 * 180.02562 * 12 11 9 39 39 H 1.08003 * 124.62088 * 0.02562 * 20 19 17 40 40 H 1.08999 * 110.35841 * 135.68712 * 21 20 19 41 41 H 1.08997 * 110.36419 * 258.00287 * 21 20 19 42 42 H 1.09007 * 110.97931 * 93.07419 * 22 21 20 43 43 H 1.08998 * 110.98364 * 216.86382 * 22 21 20 44 44 H 1.09000 * 110.50841 * 44.70000 * 23 19 17 45 45 H 1.09002 * 110.25870 * 282.46593 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8578 -1.8837 1.0619 6 6 1.9945 -3.1360 1.2271 7 7 2.8339 -4.3290 1.0921 8 6 3.0338 -4.9389 -0.2249 9 6 3.4316 -4.8742 2.1969 10 1 3.0776 -4.6175 3.1845 11 6 4.4926 -5.7568 2.0478 12 7 5.1348 -5.8259 0.9008 13 14 5.0090 -6.8464 3.4745 14 1 4.3507 -8.1715 3.3489 15 1 6.4834 -7.0222 3.4546 16 1 4.6034 -6.2114 4.7542 17 6 1.6952 -0.2283 2.4203 18 8 0.9461 0.7232 2.5328 19 6 2.2486 -0.8746 3.6203 20 6 1.6853 -0.8435 4.8205 21 6 2.5148 -1.6136 5.8216 22 6 3.9000 -1.7673 5.1531 23 6 3.5380 -1.6620 3.6541 24 1 -0.3633 0.5630 0.8597 25 1 -0.3632 0.4630 -0.9175 26 1 -0.3633 -1.0259 0.0578 27 1 1.8934 -0.5138 -0.8899 28 1 3.1294 1.4427 -0.0376 29 1 1.6463 1.9670 -0.8706 30 1 1.7078 1.9453 0.9082 31 1 3.3238 -1.8910 0.0765 32 1 3.6315 -1.8719 1.8297 33 1 1.5285 -3.1287 2.2124 34 1 1.2209 -3.1478 0.4594 35 1 3.9405 -4.5372 -0.6774 36 1 3.1308 -6.0189 -0.1142 37 1 2.1791 -4.7143 -0.8628 38 1 5.8760 -6.4429 0.7965 39 1 0.7576 -0.3404 5.0500 40 1 2.6027 -1.0531 6.7523 41 1 2.0727 -2.5924 6.0075 42 1 4.5688 -0.9596 5.4508 43 1 4.3381 -2.7388 5.3816 44 1 4.3219 -1.1344 3.1107 45 1 3.3854 -2.6545 3.2301 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717947061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:49 Heat of formation + Delta-G solvation = 16.283399 kcal Electronic energy + Delta-G solvation = -23763.916890 eV Core-core repulsion = 20590.100355 eV Total energy + Delta-G solvation = -3173.816535 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.22430 -37.66744 -36.38926 -35.15545 -32.79622 -31.09131 -29.01289 -28.17634 -27.63438 -26.96707 -25.92388 -23.80770 -22.54472 -21.08219 -20.42161 -19.78605 -17.77610 -16.91705 -16.20385 -15.65003 -15.32517 -15.11769 -14.79257 -14.31791 -13.72742 -13.64063 -13.24299 -13.03097 -12.76453 -12.51649 -12.47217 -12.18949 -11.81867 -11.73831 -11.64132 -11.56189 -11.33696 -11.14467 -11.01588 -10.89834 -10.86337 -10.83132 -10.72821 -10.37197 -10.10844 -9.95419 -9.67125 -9.21637 -8.71541 -8.54487 -8.25376 -6.87097 -5.81493 -3.21743 1.75534 3.30225 3.34158 3.41249 3.41978 3.57372 4.43792 4.69843 4.87145 5.04432 5.27540 5.29391 5.31518 5.36294 5.40040 5.50456 5.58766 5.67886 5.78941 5.85910 5.87852 5.97796 6.02317 6.04391 6.07221 6.16491 6.18351 6.26132 6.33370 6.37522 6.47195 6.51230 6.57096 6.67466 6.70105 6.86140 6.87906 7.08034 7.34239 7.62635 7.74298 7.82164 8.29421 8.56635 9.14868 9.79473 10.26915 11.24115 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.006772 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.197982 B = 4133.562547 C = 5438.665590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.143 3.857 3 C -0.167 4.167 4 N -0.597 5.597 5 C 0.053 3.947 6 C 0.141 3.859 7 N -0.599 5.599 8 C 0.162 3.838 9 C -0.255 4.255 10 H 0.073 0.927 11 C 0.003 3.997 12 N -0.904 5.904 13 Si 0.899 3.101 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.278 1.278 17 C 0.569 3.431 18 O -0.554 6.554 19 C -0.174 4.174 20 C -0.097 4.097 21 C -0.102 4.102 22 C -0.124 4.124 23 C -0.107 4.107 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.025 0.975 36 H 0.050 0.950 37 H -0.004 1.004 38 H 0.253 0.747 39 H 0.130 0.870 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.611 9.366 2.214 10.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.040 3.960 3 C -0.225 4.225 4 N -0.329 5.329 5 C -0.071 4.071 6 C 0.012 3.988 7 N -0.322 5.322 8 C 0.018 3.982 9 C -0.385 4.385 10 H 0.091 0.909 11 C -0.195 4.195 12 N -0.549 5.549 13 Si 0.729 3.271 14 H -0.216 1.216 15 H -0.218 1.218 16 H -0.203 1.203 17 C 0.359 3.641 18 O -0.435 6.435 19 C -0.177 4.177 20 C -0.116 4.116 21 C -0.139 4.139 22 C -0.162 4.162 23 C -0.143 4.143 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.125 0.875 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.015 0.985 38 H 0.063 0.937 39 H 0.148 0.852 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.834 9.710 2.170 11.061 hybrid contribution 0.481 -0.711 0.487 0.987 sum -4.352 8.999 2.656 10.343 Atomic orbital electron populations 1.22205 0.95158 1.02342 1.02801 1.20993 0.94553 0.93033 0.87415 1.22177 1.00790 0.96376 1.03129 1.48144 1.51151 1.28633 1.04923 1.23532 0.95544 0.83984 1.04080 1.21187 0.92654 0.85737 0.99223 1.43980 1.56332 1.26361 1.05527 1.20830 0.94946 0.98231 0.84215 1.19201 1.10401 1.22390 0.86470 0.90949 1.24894 0.96449 1.01214 0.96957 1.70112 1.21982 1.38502 1.24257 0.86318 0.77533 0.81241 0.82000 1.21564 1.21801 1.20293 1.18008 0.80162 0.82792 0.83124 1.90663 1.37119 1.28797 1.86903 1.21893 1.00101 1.01885 0.93812 1.23842 0.98665 0.95422 0.93706 1.21411 0.95047 0.99863 0.97557 1.22438 0.96216 1.02262 0.95239 1.21858 0.93473 1.02265 0.96716 0.90369 0.92452 0.92729 0.89876 0.92942 0.92179 0.90642 0.91215 0.87495 0.93561 0.94417 0.95671 0.93082 0.98549 0.93693 0.85247 0.90982 0.89881 0.91624 0.90318 0.91141 0.85982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.07 37.16 0.34 -1.97 16 2 C 0.14 2.07 3.28 -67.93 -0.22 1.84 16 3 C -0.17 -2.24 9.15 37.16 0.34 -1.90 16 4 N -0.60 -9.78 2.45 -167.49 -0.41 -10.19 16 5 C 0.05 0.94 5.30 -4.04 -0.02 0.92 16 6 C 0.14 2.76 5.21 -4.05 -0.02 2.74 16 7 N -0.60 -14.00 2.93 -181.13 -0.53 -14.53 16 8 C 0.16 3.80 9.03 59.85 0.54 4.35 16 9 C -0.26 -6.42 8.50 -15.06 -0.13 -6.55 16 10 H 0.07 1.78 6.94 -52.48 -0.36 1.41 16 11 C 0.00 0.09 5.03 -17.43 -0.09 0.00 16 12 N -0.90 -24.83 10.60 55.49 0.59 -24.24 16 13 Si 0.90 20.69 29.58 -169.99 -5.03 15.67 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 17 C 0.57 9.95 6.92 -12.66 -0.09 9.86 16 18 O -0.55 -10.52 13.14 5.26 0.07 -10.45 16 19 C -0.17 -2.85 5.14 -102.72 -0.53 -3.38 16 20 C -0.10 -1.41 10.51 -36.01 -0.38 -1.79 16 21 C -0.10 -1.31 6.80 -26.85 -0.18 -1.49 16 22 C -0.12 -1.74 7.16 -25.08 -0.18 -1.92 16 23 C -0.11 -1.74 4.39 -26.86 -0.12 -1.86 16 24 H 0.08 1.23 6.16 -51.93 -0.32 0.91 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.12 7.69 -51.93 -0.40 0.72 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.16 6.22 -51.93 -0.32 0.84 16 31 H 0.07 1.26 7.75 -51.93 -0.40 0.86 16 32 H 0.11 1.99 3.21 -51.93 -0.17 1.83 16 33 H 0.05 0.93 7.05 -51.93 -0.37 0.57 16 34 H 0.04 0.72 7.87 -51.93 -0.41 0.31 16 35 H 0.02 0.63 7.57 -51.93 -0.39 0.23 16 36 H 0.05 1.30 6.93 -51.93 -0.36 0.94 16 37 H 0.00 -0.08 7.85 -51.93 -0.41 -0.49 16 38 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.13 1.79 8.06 -52.48 -0.42 1.36 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.07 1.14 7.20 -51.93 -0.37 0.77 16 45 H 0.12 2.31 3.30 -51.93 -0.17 2.14 16 LS Contribution 342.75 15.07 5.17 5.17 Total: -1.00 -27.93 342.75 -8.28 -36.21 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.40 Total: 3.52 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -0.74 Total: -1.14 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.35 Total: -48.96 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.93 -8.28 -36.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717947061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.496 kcal (2) G-P(sol) polarization free energy of solvation -27.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds