Wall clock time and date at job start Tue Mar 31 2020 02:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47247 * 2 1 4 4 N 1.46504 * 109.46885 * 119.99753 * 2 1 3 5 5 C 1.46500 * 119.99824 * 119.84717 * 4 2 1 6 6 C 1.52995 * 109.47376 * 261.60136 * 5 4 2 7 7 N 1.46496 * 109.47011 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00298 * 269.99882 * 7 6 5 9 9 C 1.36942 * 120.00020 * 90.00644 * 7 6 5 10 10 H 1.08006 * 119.99871 * 17.40525 * 9 7 6 11 11 C 1.38812 * 120.00394 * 197.41368 * 9 7 6 12 12 N 1.31629 * 119.99562 * 16.49122 * 11 9 7 13 13 Si 1.86794 * 120.00386 * 196.49655 * 11 9 7 14 14 H 1.48491 * 109.47522 * 94.98010 * 13 11 9 15 15 H 1.48500 * 109.47017 * 214.98589 * 13 11 9 16 16 H 1.48507 * 109.46745 * 334.98035 * 13 11 9 17 17 C 1.34773 * 119.99911 * 299.84965 * 4 2 1 18 18 O 1.21617 * 120.00411 * 3.54418 * 17 4 2 19 19 C 1.47109 * 119.99895 * 183.54071 * 17 4 2 20 20 C 1.32611 * 124.62208 * 204.64137 * 19 17 4 21 21 C 1.51113 * 110.75941 * 179.73877 * 20 19 17 22 22 C 1.54572 * 104.83655 * 16.84259 * 21 20 19 23 23 C 1.51114 * 124.61962 * 24.78877 * 19 17 4 24 24 H 1.08997 * 109.47078 * 303.22351 * 1 2 3 25 25 H 1.08998 * 109.46621 * 63.22039 * 1 2 3 26 26 H 1.08990 * 109.47237 * 183.22294 * 1 2 3 27 27 H 1.08992 * 109.47313 * 239.99666 * 2 1 3 28 28 H 1.09004 * 109.47285 * 182.09617 * 3 2 1 29 29 H 1.08999 * 109.47024 * 302.09757 * 3 2 1 30 30 H 1.09000 * 109.47276 * 62.09647 * 3 2 1 31 31 H 1.08998 * 109.47148 * 21.60589 * 5 4 2 32 32 H 1.09007 * 109.46906 * 141.60461 * 5 4 2 33 33 H 1.08998 * 109.47352 * 300.00329 * 6 5 4 34 34 H 1.08997 * 109.46965 * 60.00207 * 6 5 4 35 35 H 1.09000 * 109.46926 * 93.37863 * 8 7 6 36 36 H 1.08998 * 109.47482 * 213.37195 * 8 7 6 37 37 H 1.08994 * 109.47130 * 333.37732 * 8 7 6 38 38 H 0.97003 * 119.99236 * 180.02562 * 12 11 9 39 39 H 1.08003 * 124.62088 * 0.02562 * 20 19 17 40 40 H 1.08999 * 110.35841 * 135.68712 * 21 20 19 41 41 H 1.08997 * 110.36419 * 258.00287 * 21 20 19 42 42 H 1.09007 * 110.97931 * 93.07419 * 22 21 20 43 43 H 1.08998 * 110.98364 * 216.86382 * 22 21 20 44 44 H 1.09000 * 110.50841 * 44.70000 * 23 19 17 45 45 H 1.09002 * 110.25870 * 282.46593 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8578 -1.8837 1.0619 6 6 1.9945 -3.1360 1.2271 7 7 2.8339 -4.3290 1.0921 8 6 3.0338 -4.9389 -0.2249 9 6 3.4316 -4.8742 2.1969 10 1 3.0776 -4.6175 3.1845 11 6 4.4926 -5.7568 2.0478 12 7 5.1348 -5.8259 0.9008 13 14 5.0090 -6.8464 3.4745 14 1 4.3507 -8.1715 3.3489 15 1 6.4834 -7.0222 3.4546 16 1 4.6034 -6.2114 4.7542 17 6 1.6952 -0.2283 2.4203 18 8 0.9461 0.7232 2.5328 19 6 2.2486 -0.8746 3.6203 20 6 1.6853 -0.8435 4.8205 21 6 2.5148 -1.6136 5.8216 22 6 3.9000 -1.7673 5.1531 23 6 3.5380 -1.6620 3.6541 24 1 -0.3633 0.5630 0.8597 25 1 -0.3632 0.4630 -0.9175 26 1 -0.3633 -1.0259 0.0578 27 1 1.8934 -0.5138 -0.8899 28 1 3.1294 1.4427 -0.0376 29 1 1.6463 1.9670 -0.8706 30 1 1.7078 1.9453 0.9082 31 1 3.3238 -1.8910 0.0765 32 1 3.6315 -1.8719 1.8297 33 1 1.5285 -3.1287 2.2124 34 1 1.2209 -3.1478 0.4594 35 1 3.9405 -4.5372 -0.6774 36 1 3.1308 -6.0189 -0.1142 37 1 2.1791 -4.7143 -0.8628 38 1 5.8760 -6.4429 0.7965 39 1 0.7576 -0.3404 5.0500 40 1 2.6027 -1.0531 6.7523 41 1 2.0727 -2.5924 6.0075 42 1 4.5688 -0.9596 5.4508 43 1 4.3381 -2.7388 5.3816 44 1 4.3219 -1.1344 3.1107 45 1 3.3854 -2.6545 3.2301 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717947061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:48 Heat of formation + Delta-G solvation = 2.681057 kcal Electronic energy + Delta-G solvation = -23764.506732 eV Core-core repulsion = 20590.100355 eV Total energy + Delta-G solvation = -3174.406377 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.53417 -38.85708 -38.00115 -36.68656 -34.21814 -32.84916 -30.25165 -29.41825 -29.12868 -28.06600 -27.85294 -25.39224 -23.88161 -22.48872 -21.95023 -20.94617 -19.06996 -18.78228 -17.53338 -16.97300 -16.84532 -16.52558 -16.12856 -15.69083 -15.48536 -15.07890 -14.69412 -14.45885 -14.15658 -14.08278 -13.67102 -13.46300 -13.19449 -13.06655 -12.92500 -12.83475 -12.75149 -12.72078 -12.50635 -12.42095 -12.18711 -12.12416 -12.04244 -12.03632 -11.84793 -11.76502 -11.12741 -10.59655 -10.54046 -9.88169 -9.61644 -8.76054 -7.79017 -5.20390 0.51851 1.50045 1.53368 1.60233 2.01448 2.26757 2.56322 3.35967 3.44130 3.71256 3.83652 3.89172 4.10680 4.16226 4.17892 4.23437 4.34198 4.37925 4.59030 4.65443 4.70667 4.74006 4.77335 4.86698 4.88034 4.92365 4.93583 4.96670 5.00155 5.03858 5.18883 5.24030 5.31053 5.36047 5.40080 5.42274 5.44585 5.66916 5.69168 5.77186 5.79090 6.32692 6.49041 7.18599 7.23143 7.89974 8.33328 9.25723 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.006772 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.197982 B = 4133.562547 C = 5438.665590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.133 3.867 3 C -0.158 4.158 4 N -0.595 5.595 5 C 0.069 3.931 6 C 0.148 3.852 7 N -0.611 5.611 8 C 0.176 3.824 9 C -0.248 4.248 10 H 0.078 0.922 11 C -0.048 4.048 12 N -0.935 5.935 13 Si 0.954 3.046 14 H -0.295 1.295 15 H -0.299 1.299 16 H -0.261 1.261 17 C 0.565 3.435 18 O -0.573 6.573 19 C -0.205 4.205 20 C -0.077 4.077 21 C -0.098 4.098 22 C -0.123 4.123 23 C -0.101 4.101 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.047 0.953 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.005 0.995 36 H 0.023 0.977 37 H 0.025 0.975 38 H 0.246 0.754 39 H 0.139 0.861 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.389 10.204 3.179 11.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.031 3.969 3 C -0.216 4.216 4 N -0.326 5.326 5 C -0.055 4.055 6 C 0.021 3.979 7 N -0.335 5.335 8 C 0.031 3.969 9 C -0.378 4.378 10 H 0.096 0.904 11 C -0.243 4.243 12 N -0.582 5.582 13 Si 0.783 3.217 14 H -0.222 1.222 15 H -0.226 1.226 16 H -0.185 1.185 17 C 0.356 3.644 18 O -0.455 6.455 19 C -0.208 4.208 20 C -0.097 4.097 21 C -0.134 4.134 22 C -0.160 4.160 23 C -0.138 4.138 24 H 0.076 0.924 25 H 0.102 0.898 26 H 0.066 0.934 27 H 0.114 0.886 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.023 0.977 36 H 0.042 0.958 37 H 0.043 0.957 38 H 0.055 0.945 39 H 0.156 0.844 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.639 10.575 3.144 12.390 hybrid contribution 0.633 -0.895 0.191 1.113 sum -5.006 9.679 3.335 11.396 Atomic orbital electron populations 1.22123 0.94541 1.01789 1.03232 1.21262 0.95082 0.93596 0.86978 1.22097 1.00718 0.95645 1.03177 1.48120 1.50789 1.28113 1.05546 1.23132 0.94954 0.83836 1.03610 1.21167 0.92342 0.85204 0.99195 1.44156 1.56387 1.27848 1.05097 1.20587 0.95230 0.96393 0.84702 1.19465 1.09601 1.21497 0.87221 0.90420 1.25531 0.97081 1.02758 0.98940 1.70255 1.22643 1.39347 1.25983 0.85434 0.76437 0.79388 0.80435 1.22207 1.22635 1.18531 1.18238 0.79894 0.82591 0.83676 1.90652 1.38087 1.29586 1.87200 1.21909 1.00901 1.03745 0.94201 1.24167 0.98449 0.93647 0.93420 1.21461 0.93707 1.00263 0.98019 1.22455 0.97320 1.02663 0.93608 1.21685 0.93402 1.00504 0.98206 0.92373 0.89831 0.93404 0.88630 0.93049 0.89648 0.92781 0.91442 0.88260 0.94027 0.93529 0.97680 0.95770 0.95695 0.94456 0.84374 0.88100 0.89288 0.90135 0.90701 0.91974 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 9.07 71.98 0.65 -3.48 16 2 C 0.13 3.64 3.28 44.99 0.15 3.79 16 3 C -0.16 -4.02 9.15 71.98 0.66 -3.36 16 4 N -0.59 -19.04 2.45 -802.07 -1.96 -21.00 16 5 C 0.07 2.43 5.30 86.38 0.46 2.89 16 6 C 0.15 5.72 5.21 86.38 0.45 6.17 16 7 N -0.61 -28.44 2.93 -726.96 -2.13 -30.57 16 8 C 0.18 8.25 9.03 127.77 1.15 9.41 16 9 C -0.25 -12.43 8.50 84.03 0.71 -11.71 16 10 H 0.08 3.76 6.94 -2.91 -0.02 3.74 16 11 C -0.05 -2.51 5.03 84.86 0.43 -2.09 16 12 N -0.94 -52.35 10.60 21.65 0.23 -52.12 16 13 Si 0.95 42.57 29.58 68.60 2.03 44.60 16 14 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 15 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 16 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 17 C 0.56 19.41 6.92 86.57 0.60 20.01 16 18 O -0.57 -21.45 13.14 -4.08 -0.05 -21.51 16 19 C -0.20 -6.50 5.14 -18.56 -0.10 -6.59 16 20 C -0.08 -2.10 10.51 24.66 0.26 -1.84 16 21 C -0.10 -2.22 6.80 30.51 0.21 -2.02 16 22 C -0.12 -3.21 7.16 31.66 0.23 -2.98 16 23 C -0.10 -3.24 4.39 30.51 0.13 -3.10 16 24 H 0.06 1.77 6.16 -2.39 -0.01 1.75 16 25 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.10 2.38 7.69 -2.39 -0.02 2.36 16 28 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.05 1.62 6.22 -2.39 -0.01 1.61 16 31 H 0.07 2.40 7.75 -2.39 -0.02 2.38 16 32 H 0.10 3.72 3.21 -2.38 -0.01 3.71 16 33 H 0.04 1.65 7.05 -2.39 -0.02 1.63 16 34 H 0.05 1.70 7.87 -2.39 -0.02 1.68 16 35 H 0.00 0.25 7.57 -2.39 -0.02 0.23 16 36 H 0.02 1.23 6.93 -2.39 -0.02 1.22 16 37 H 0.02 1.00 7.85 -2.39 -0.02 0.98 16 38 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 39 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 40 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.06 2.02 7.20 -2.39 -0.02 2.01 16 45 H 0.09 3.55 3.30 -2.39 -0.01 3.54 16 Total: -1.00 -59.68 342.75 5.07 -54.62 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.96 Total: 20.90 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 5.99 Total: 5.08 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -3.86 Total: -103.69 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.05 Total: -21.51 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -59.68 5.07 -54.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717947061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.297 kcal (2) G-P(sol) polarization free energy of solvation -59.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds