Wall clock time and date at job start Tue Mar 31 2020 02:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46875 * 2 1 4 4 N 1.46503 * 109.47238 * 119.99704 * 2 1 3 5 5 C 1.46499 * 120.00046 * 300.00064 * 4 2 1 6 6 C 1.53006 * 109.47121 * 89.99792 * 5 4 2 7 7 N 1.46499 * 109.47121 * 179.97438 * 6 5 4 8 8 C 1.46500 * 119.99846 * 90.00208 * 7 6 5 9 9 C 1.36938 * 120.00114 * 269.99972 * 7 6 5 10 10 H 1.08005 * 119.99707 * 142.02348 * 9 7 6 11 11 C 1.38810 * 119.99921 * 322.02896 * 9 7 6 12 12 N 1.31621 * 119.99971 * 157.08946 * 11 9 7 13 13 Si 1.86804 * 120.00207 * 337.08741 * 11 9 7 14 14 H 1.48505 * 109.46930 * 95.68512 * 13 11 9 15 15 H 1.48497 * 109.47076 * 215.68898 * 13 11 9 16 16 H 1.48502 * 109.46681 * 335.69180 * 13 11 9 17 17 C 1.34772 * 119.99782 * 119.99527 * 4 2 1 18 18 O 1.21284 * 119.99990 * 180.02562 * 17 4 2 19 19 C 1.50701 * 120.00373 * 0.02562 * 17 4 2 20 20 C 1.54631 * 111.03539 * 292.02119 * 19 17 4 21 21 C 1.51098 * 104.72263 * 217.33187 * 20 19 17 22 22 C 1.30527 * 111.10610 * 16.43617 * 21 20 19 23 23 C 1.51100 * 111.10257 * 0.02562 * 22 21 20 24 24 H 1.09008 * 109.47089 * 299.99815 * 1 2 3 25 25 H 1.09000 * 109.47197 * 59.99806 * 1 2 3 26 26 H 1.08998 * 109.47457 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46841 * 239.99703 * 2 1 3 28 28 H 1.09001 * 109.46458 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46990 * 299.99413 * 3 2 1 30 30 H 1.08998 * 109.47137 * 59.99994 * 3 2 1 31 31 H 1.08998 * 109.47213 * 209.99864 * 5 4 2 32 32 H 1.08997 * 109.47057 * 330.00399 * 5 4 2 33 33 H 1.08998 * 109.47136 * 300.00119 * 6 5 4 34 34 H 1.09003 * 109.47095 * 60.00301 * 6 5 4 35 35 H 1.08997 * 109.47504 * 85.64022 * 8 7 6 36 36 H 1.09006 * 109.47010 * 205.63493 * 8 7 6 37 37 H 1.08999 * 109.47120 * 325.63025 * 8 7 6 38 38 H 0.96997 * 119.99980 * 179.97438 * 12 11 9 39 39 H 1.09002 * 110.91029 * 56.02656 * 19 17 4 40 40 H 1.09004 * 110.38499 * 336.14093 * 20 19 17 41 41 H 1.09002 * 110.38602 * 98.52261 * 20 19 17 42 42 H 1.07997 * 124.44556 * 196.45821 * 21 20 19 43 43 H 1.07997 * 124.44804 * 180.02562 * 22 21 20 44 44 H 1.09004 * 110.38378 * 224.75234 * 23 22 21 45 45 H 1.08995 * 110.48581 * 102.42549 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6645 -0.1900 2.5268 6 6 0.3634 -0.8486 2.9900 7 7 0.0098 -0.3485 4.3209 8 6 -0.8323 0.8427 4.4558 9 6 0.4664 -0.9944 5.4386 10 1 0.7690 -0.4255 6.3054 11 6 0.5404 -2.3804 5.4577 12 7 1.3616 -2.9843 6.2904 13 14 -0.5257 -3.3887 4.3017 14 1 0.2521 -3.7321 3.0841 15 1 -0.9533 -4.6363 4.9843 16 1 -1.7233 -2.5991 3.9176 17 6 2.7931 -1.7864 1.0726 18 8 3.1971 -2.3584 2.0628 19 6 3.1576 -2.3011 -0.2961 20 6 1.9156 -2.8616 -1.0272 21 6 2.4265 -4.0652 -1.7845 22 6 3.5897 -4.4466 -1.3314 23 6 4.0482 -3.5614 -0.1959 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.4629 -0.4292 3.2292 32 1 1.5295 0.8907 2.4843 33 1 -0.4350 -0.6094 2.2876 34 1 0.4983 -1.9294 3.0325 35 1 -1.8820 0.5526 4.4115 36 1 -0.6288 1.3251 5.4119 37 1 -0.6125 1.5368 3.6447 38 1 1.4131 -3.9528 6.3039 39 1 3.6429 -1.5245 -0.8873 40 1 1.1542 -3.1613 -0.3070 41 1 1.5150 -2.1201 -1.7184 42 1 1.8987 -4.5464 -2.5945 43 1 4.1507 -5.2849 -1.7173 44 1 5.0976 -3.2952 -0.3220 45 1 3.8960 -4.0595 0.7615 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717947852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:52 Heat of formation + Delta-G solvation = 12.669355 kcal Electronic energy + Delta-G solvation = -23813.846001 eV Core-core repulsion = 20639.872748 eV Total energy + Delta-G solvation = -3173.973252 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.36114 -37.85490 -36.52183 -35.54542 -31.79327 -31.35689 -30.20452 -28.32324 -28.11512 -27.16750 -26.04696 -23.63964 -22.25889 -21.02603 -20.62582 -18.97637 -18.31420 -17.33044 -16.66459 -16.25812 -15.53137 -15.19071 -14.79286 -14.12473 -14.07922 -13.76704 -13.11079 -13.07910 -12.95951 -12.79044 -12.58473 -12.40208 -12.21763 -12.09301 -11.89014 -11.73327 -11.68574 -11.42743 -11.25775 -11.23709 -11.11490 -10.91942 -10.78174 -10.46878 -10.35794 -9.65922 -9.46261 -9.29842 -8.93302 -8.49349 -8.28665 -6.72790 -5.90333 -3.32091 2.19543 2.99318 3.27450 3.44196 3.52675 3.57880 4.44283 4.53591 4.63731 4.73396 4.80007 5.05353 5.10017 5.15764 5.20538 5.24354 5.48431 5.52986 5.55896 5.56312 5.64796 5.71964 5.75425 5.78763 5.81672 5.88481 5.95530 6.09398 6.16269 6.20610 6.21644 6.27611 6.34515 6.45593 6.59138 6.70697 6.72905 6.81621 6.89630 7.07263 7.79841 8.14432 8.46186 8.61100 9.06476 9.80909 10.19537 11.25225 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015447 B = 0.007224 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.257139 B = 3874.870938 C = 4827.819352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.125 3.875 3 C -0.163 4.163 4 N -0.605 5.605 5 C 0.098 3.902 6 C 0.123 3.877 7 N -0.609 5.609 8 C 0.126 3.874 9 C -0.279 4.279 10 H 0.078 0.922 11 C 0.046 3.954 12 N -0.893 5.893 13 Si 0.876 3.124 14 H -0.283 1.283 15 H -0.302 1.302 16 H -0.273 1.273 17 C 0.512 3.488 18 O -0.517 6.517 19 C -0.115 4.115 20 C -0.090 4.090 21 C -0.173 4.173 22 C -0.158 4.158 23 C -0.091 4.091 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.005 0.995 36 H 0.045 0.955 37 H 0.024 0.976 38 H 0.263 0.737 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.073 0.927 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.118 4.977 -19.946 20.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.021 3.979 3 C -0.221 4.221 4 N -0.340 5.340 5 C -0.026 4.026 6 C -0.003 4.003 7 N -0.334 5.334 8 C -0.020 4.020 9 C -0.407 4.407 10 H 0.095 0.905 11 C -0.156 4.156 12 N -0.533 5.533 13 Si 0.706 3.294 14 H -0.211 1.211 15 H -0.230 1.230 16 H -0.198 1.198 17 C 0.299 3.701 18 O -0.392 6.392 19 C -0.136 4.136 20 C -0.127 4.127 21 C -0.191 4.191 22 C -0.176 4.176 23 C -0.128 4.128 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.024 0.976 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.119 0.881 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.092 0.908 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.383 4.548 -19.272 19.850 hybrid contribution -0.622 -0.678 -0.690 1.150 sum 0.761 3.869 -19.962 20.348 Atomic orbital electron populations 1.22335 0.95012 1.02672 1.02601 1.21233 0.94697 0.93508 0.88465 1.22170 1.01499 0.95958 1.02496 1.48152 1.50415 1.28111 1.07277 1.22283 1.00816 0.97751 0.81715 1.21658 0.93378 0.98550 0.86750 1.43986 1.56601 1.31183 1.01594 1.21079 0.92957 0.88956 0.98965 1.18723 1.38858 0.89019 0.94106 0.90465 1.25414 0.97049 0.96770 0.96355 1.69865 1.34669 1.09328 1.39403 0.86919 0.82217 0.79518 0.80759 1.21071 1.22999 1.19785 1.20362 0.78538 0.80391 0.90837 1.90797 1.52863 1.56249 1.39300 1.22162 0.97984 0.98790 0.94692 1.21416 0.97012 0.96161 0.98134 1.23191 0.97098 0.98702 1.00138 1.23321 0.97483 0.99714 0.97118 1.21320 0.98918 0.93410 0.99142 0.91243 0.91785 0.92190 0.89083 0.92358 0.91692 0.91773 0.89267 0.91616 0.94057 0.92448 0.97647 0.93590 0.95718 0.92727 0.88134 0.90180 0.90427 0.85718 0.85700 0.90848 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 8.14 37.16 0.30 -1.61 16 2 C 0.12 1.47 2.78 -67.93 -0.19 1.28 16 3 C -0.16 -1.65 9.17 37.16 0.34 -1.31 16 4 N -0.61 -10.03 2.40 -166.10 -0.40 -10.43 16 5 C 0.10 1.95 5.15 -4.04 -0.02 1.93 16 6 C 0.12 2.78 4.58 -4.04 -0.02 2.76 16 7 N -0.61 -15.10 2.47 -181.11 -0.45 -15.54 16 8 C 0.13 2.55 10.70 59.85 0.64 3.19 16 9 C -0.28 -8.18 9.88 -15.06 -0.15 -8.33 16 10 H 0.08 2.42 8.06 -52.48 -0.42 1.99 16 11 C 0.05 1.40 5.29 -17.43 -0.09 1.31 16 12 N -0.89 -28.86 13.97 55.49 0.78 -28.09 16 13 Si 0.88 23.97 25.10 -169.99 -4.27 19.71 16 14 H -0.28 -7.82 6.68 56.52 0.38 -7.44 16 15 H -0.30 -8.28 7.11 56.52 0.40 -7.88 16 16 H -0.27 -7.24 7.11 56.52 0.40 -6.84 16 17 C 0.51 9.34 6.95 -10.99 -0.08 9.26 16 18 O -0.52 -12.29 15.09 5.55 0.08 -12.20 16 19 C -0.11 -1.55 2.49 -90.05 -0.22 -1.77 16 20 C -0.09 -1.08 5.43 -26.83 -0.15 -1.22 16 21 C -0.17 -1.90 10.77 -35.70 -0.38 -2.28 16 22 C -0.16 -1.81 10.77 -35.70 -0.38 -2.20 16 23 C -0.09 -1.24 6.18 -26.82 -0.17 -1.41 16 24 H 0.07 0.89 6.17 -51.92 -0.32 0.57 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 0.90 4.24 -51.93 -0.22 0.68 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.71 6.66 -51.93 -0.35 0.37 16 31 H 0.09 2.15 7.42 -51.93 -0.39 1.77 16 32 H 0.07 1.15 6.43 -51.93 -0.33 0.82 16 33 H 0.04 0.83 5.37 -51.93 -0.28 0.55 16 34 H 0.06 1.51 3.37 -51.93 -0.18 1.33 16 35 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 36 H 0.05 0.91 8.00 -51.93 -0.42 0.50 16 37 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 38 H 0.26 8.12 8.31 -40.82 -0.34 7.78 16 39 H 0.10 1.10 7.63 -51.93 -0.40 0.71 16 40 H 0.08 1.15 7.88 -51.93 -0.41 0.74 16 41 H 0.08 0.73 6.87 -51.93 -0.36 0.37 16 42 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.10 1.65 6.96 -51.93 -0.36 1.29 16 LS Contribution 344.66 15.07 5.19 5.19 Total: -1.00 -35.17 344.66 -7.01 -42.18 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.38 Total: -0.43 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -0.57 Total: -0.39 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.07 Total: -54.06 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.08 Total: -12.20 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -4.27 Total: 19.71 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.17 -7.01 -42.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717947852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.853 kcal (2) G-P(sol) polarization free energy of solvation -35.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds