Wall clock time and date at job start Tue Mar 31 2020 02:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46875 * 2 1 4 4 N 1.46503 * 109.47238 * 119.99704 * 2 1 3 5 5 C 1.46499 * 120.00046 * 300.00064 * 4 2 1 6 6 C 1.53006 * 109.47121 * 89.99792 * 5 4 2 7 7 N 1.46499 * 109.47121 * 179.97438 * 6 5 4 8 8 C 1.46500 * 119.99846 * 90.00208 * 7 6 5 9 9 C 1.36938 * 120.00114 * 269.99972 * 7 6 5 10 10 H 1.08005 * 119.99707 * 142.02348 * 9 7 6 11 11 C 1.38810 * 119.99921 * 322.02896 * 9 7 6 12 12 N 1.31621 * 119.99971 * 157.08946 * 11 9 7 13 13 Si 1.86804 * 120.00207 * 337.08741 * 11 9 7 14 14 H 1.48505 * 109.46930 * 95.68512 * 13 11 9 15 15 H 1.48497 * 109.47076 * 215.68898 * 13 11 9 16 16 H 1.48502 * 109.46681 * 335.69180 * 13 11 9 17 17 C 1.34772 * 119.99782 * 119.99527 * 4 2 1 18 18 O 1.21284 * 119.99990 * 180.02562 * 17 4 2 19 19 C 1.50701 * 120.00373 * 0.02562 * 17 4 2 20 20 C 1.54631 * 111.03539 * 292.02119 * 19 17 4 21 21 C 1.51098 * 104.72263 * 217.33187 * 20 19 17 22 22 C 1.30527 * 111.10610 * 16.43617 * 21 20 19 23 23 C 1.51100 * 111.10257 * 0.02562 * 22 21 20 24 24 H 1.09008 * 109.47089 * 299.99815 * 1 2 3 25 25 H 1.09000 * 109.47197 * 59.99806 * 1 2 3 26 26 H 1.08998 * 109.47457 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46841 * 239.99703 * 2 1 3 28 28 H 1.09001 * 109.46458 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46990 * 299.99413 * 3 2 1 30 30 H 1.08998 * 109.47137 * 59.99994 * 3 2 1 31 31 H 1.08998 * 109.47213 * 209.99864 * 5 4 2 32 32 H 1.08997 * 109.47057 * 330.00399 * 5 4 2 33 33 H 1.08998 * 109.47136 * 300.00119 * 6 5 4 34 34 H 1.09003 * 109.47095 * 60.00301 * 6 5 4 35 35 H 1.08997 * 109.47504 * 85.64022 * 8 7 6 36 36 H 1.09006 * 109.47010 * 205.63493 * 8 7 6 37 37 H 1.08999 * 109.47120 * 325.63025 * 8 7 6 38 38 H 0.96997 * 119.99980 * 179.97438 * 12 11 9 39 39 H 1.09002 * 110.91029 * 56.02656 * 19 17 4 40 40 H 1.09004 * 110.38499 * 336.14093 * 20 19 17 41 41 H 1.09002 * 110.38602 * 98.52261 * 20 19 17 42 42 H 1.07997 * 124.44556 * 196.45821 * 21 20 19 43 43 H 1.07997 * 124.44804 * 180.02562 * 22 21 20 44 44 H 1.09004 * 110.38378 * 224.75234 * 23 22 21 45 45 H 1.08995 * 110.48581 * 102.42549 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6645 -0.1900 2.5268 6 6 0.3634 -0.8486 2.9900 7 7 0.0098 -0.3485 4.3209 8 6 -0.8323 0.8427 4.4558 9 6 0.4664 -0.9944 5.4386 10 1 0.7690 -0.4255 6.3054 11 6 0.5404 -2.3804 5.4577 12 7 1.3616 -2.9843 6.2904 13 14 -0.5257 -3.3887 4.3017 14 1 0.2521 -3.7321 3.0841 15 1 -0.9533 -4.6363 4.9843 16 1 -1.7233 -2.5991 3.9176 17 6 2.7931 -1.7864 1.0726 18 8 3.1971 -2.3584 2.0628 19 6 3.1576 -2.3011 -0.2961 20 6 1.9156 -2.8616 -1.0272 21 6 2.4265 -4.0652 -1.7845 22 6 3.5897 -4.4466 -1.3314 23 6 4.0482 -3.5614 -0.1959 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.4629 -0.4292 3.2292 32 1 1.5295 0.8907 2.4843 33 1 -0.4350 -0.6094 2.2876 34 1 0.4983 -1.9294 3.0325 35 1 -1.8820 0.5526 4.4115 36 1 -0.6288 1.3251 5.4119 37 1 -0.6125 1.5368 3.6447 38 1 1.4131 -3.9528 6.3039 39 1 3.6429 -1.5245 -0.8873 40 1 1.1542 -3.1613 -0.3070 41 1 1.5150 -2.1201 -1.7184 42 1 1.8987 -4.5464 -2.5945 43 1 4.1507 -5.2849 -1.7173 44 1 5.0976 -3.2952 -0.3220 45 1 3.8960 -4.0595 0.7615 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717947852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:51 Heat of formation + Delta-G solvation = -10.636111 kcal Electronic energy + Delta-G solvation = -23814.856601 eV Core-core repulsion = 20639.872748 eV Total energy + Delta-G solvation = -3174.983853 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.64378 -39.01393 -38.00914 -37.25675 -33.88025 -32.77973 -31.47195 -29.59691 -29.19339 -28.11901 -27.95237 -25.32719 -23.50407 -22.68252 -22.02546 -19.95608 -19.47410 -18.83795 -18.53680 -17.51514 -17.15205 -16.72006 -16.22495 -15.75275 -15.42507 -15.03401 -14.97614 -14.64870 -14.39965 -14.07592 -13.98738 -13.64929 -13.48142 -13.40967 -13.07300 -13.05055 -12.89278 -12.83100 -12.67703 -12.54749 -12.31158 -12.20484 -12.14042 -12.10484 -11.87135 -11.62491 -11.38096 -10.77348 -10.72013 -9.84763 -9.80791 -8.77735 -8.28125 -5.64517 1.22251 1.24762 1.33144 1.37741 1.60771 1.97296 2.35513 2.99581 3.35003 3.46413 3.54902 3.76164 3.87563 4.07860 4.15651 4.16598 4.30145 4.36946 4.44484 4.46174 4.52362 4.68223 4.70338 4.72426 4.74684 4.82584 4.87339 4.90439 4.96045 4.99770 5.02923 5.06398 5.10537 5.14966 5.17228 5.38855 5.41485 5.55645 5.64911 5.88018 5.97579 6.10014 6.48045 6.93352 7.23208 7.58162 7.98290 8.91545 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015447 B = 0.007224 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.257139 B = 3874.870938 C = 4827.819352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 C -0.159 4.159 4 N -0.601 5.601 5 C 0.114 3.886 6 C 0.124 3.876 7 N -0.624 5.624 8 C 0.123 3.877 9 C -0.262 4.262 10 H 0.045 0.955 11 C -0.015 4.015 12 N -0.943 5.943 13 Si 0.942 3.058 14 H -0.296 1.296 15 H -0.305 1.305 16 H -0.251 1.251 17 C 0.501 3.499 18 O -0.590 6.590 19 C -0.108 4.108 20 C -0.089 4.089 21 C -0.163 4.163 22 C -0.168 4.168 23 C -0.098 4.098 24 H 0.054 0.946 25 H 0.102 0.898 26 H 0.047 0.953 27 H 0.118 0.882 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.033 0.967 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.019 0.981 35 H 0.017 0.983 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.260 0.740 39 H 0.137 0.863 40 H 0.052 0.948 41 H 0.115 0.885 42 H 0.155 0.845 43 H 0.146 0.854 44 H 0.083 0.917 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.625 6.735 -24.622 25.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 C -0.217 4.217 4 N -0.334 5.334 5 C -0.011 4.011 6 C -0.002 4.002 7 N -0.349 5.349 8 C -0.021 4.021 9 C -0.392 4.392 10 H 0.062 0.938 11 C -0.212 4.212 12 N -0.587 5.587 13 Si 0.772 3.228 14 H -0.224 1.224 15 H -0.233 1.233 16 H -0.175 1.175 17 C 0.290 3.710 18 O -0.469 6.469 19 C -0.129 4.129 20 C -0.126 4.126 21 C -0.181 4.181 22 C -0.186 4.186 23 C -0.135 4.135 24 H 0.073 0.927 25 H 0.121 0.879 26 H 0.066 0.934 27 H 0.136 0.864 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.154 0.846 40 H 0.070 0.930 41 H 0.133 0.867 42 H 0.172 0.828 43 H 0.164 0.836 44 H 0.102 0.898 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.412 6.375 -24.014 24.849 hybrid contribution -0.044 -1.075 0.759 1.317 sum -0.457 5.300 -23.256 23.856 Atomic orbital electron populations 1.22346 0.94150 1.02289 1.03819 1.21687 0.95391 0.94450 0.86910 1.22159 1.01346 0.94568 1.03625 1.48278 1.49695 1.27804 1.07584 1.21782 0.97492 0.99053 0.82777 1.21684 0.95686 0.96373 0.86417 1.44162 1.57652 1.32108 1.01018 1.21238 0.92630 0.87645 1.00562 1.18671 1.36969 0.88914 0.94628 0.93752 1.26043 0.98471 0.98182 0.98496 1.69994 1.37001 1.09273 1.42394 0.85853 0.80781 0.78031 0.78136 1.22440 1.23310 1.17513 1.21330 0.77650 0.79964 0.92018 1.90772 1.55666 1.58452 1.42046 1.22224 0.99185 0.99425 0.92060 1.21467 0.95413 0.97736 0.98011 1.23433 0.96560 0.97877 1.00232 1.23395 0.98424 1.00272 0.96474 1.21325 1.00009 0.94072 0.98135 0.92654 0.87901 0.93374 0.86444 0.92690 0.88232 0.92915 0.94791 0.88681 0.90566 0.96334 0.96446 0.93870 0.91680 0.93136 0.84556 0.92985 0.86676 0.82764 0.83644 0.89823 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 8.14 71.98 0.59 -2.47 16 2 C 0.12 2.30 2.78 44.99 0.13 2.43 16 3 C -0.16 -2.52 9.17 71.98 0.66 -1.86 16 4 N -0.60 -19.37 2.40 -797.82 -1.91 -21.28 16 5 C 0.11 4.55 5.15 86.38 0.44 5.00 16 6 C 0.12 5.55 4.58 86.38 0.40 5.95 16 7 N -0.62 -30.76 2.47 -726.92 -1.79 -32.55 16 8 C 0.12 4.70 10.70 127.77 1.37 6.06 16 9 C -0.26 -15.90 9.88 84.03 0.83 -15.07 16 10 H 0.04 2.93 8.06 -2.91 -0.02 2.91 16 11 C -0.01 -0.95 5.29 84.86 0.45 -0.50 16 12 N -0.94 -64.46 13.97 21.65 0.30 -64.16 16 13 Si 0.94 51.77 25.10 68.60 1.72 53.49 16 14 H -0.30 -16.72 6.68 99.48 0.66 -16.06 16 15 H -0.30 -16.63 7.11 99.48 0.71 -15.92 16 16 H -0.25 -12.72 7.11 99.48 0.71 -12.01 16 17 C 0.50 18.62 6.95 87.66 0.61 19.23 16 18 O -0.59 -30.13 15.09 -3.04 -0.05 -30.18 16 19 C -0.11 -2.75 2.49 -10.42 -0.03 -2.77 16 20 C -0.09 -1.87 5.43 30.53 0.17 -1.70 16 21 C -0.16 -3.03 10.77 26.26 0.28 -2.74 16 22 C -0.17 -3.51 10.77 26.26 0.28 -3.22 16 23 C -0.10 -2.69 6.18 30.54 0.19 -2.50 16 24 H 0.05 1.17 6.17 -2.38 -0.01 1.16 16 25 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.12 1.71 4.24 -2.39 -0.01 1.70 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 0.97 6.66 -2.39 -0.02 0.95 16 31 H 0.03 1.73 7.42 -2.39 -0.02 1.71 16 32 H 0.10 3.18 6.43 -2.39 -0.02 3.16 16 33 H 0.08 2.86 5.37 -2.39 -0.01 2.85 16 34 H 0.02 0.99 3.37 -2.39 -0.01 0.98 16 35 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.04 1.65 8.00 -2.38 -0.02 1.64 16 37 H 0.06 1.96 8.10 -2.39 -0.02 1.94 16 38 H 0.26 17.02 8.31 -92.71 -0.77 16.25 16 39 H 0.14 2.48 7.63 -2.39 -0.02 2.47 16 40 H 0.05 1.42 7.88 -2.38 -0.02 1.40 16 41 H 0.12 1.53 6.87 -2.39 -0.02 1.51 16 42 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 43 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 44 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.05 1.91 6.96 -2.39 -0.02 1.90 16 Total: -1.00 -85.01 344.66 5.55 -79.46 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.92 Total: 9.39 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 6.36 Total: 5.83 kcal Atomic # 7 Polarization: -114.59 SS G_CDS: -3.41 Total: -117.99 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.05 Total: -30.18 kcal Atomic # 14 Polarization: 51.77 SS G_CDS: 1.72 Total: 53.49 kcal Total: -85.01 5.55 -79.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717947852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.826 kcal (2) G-P(sol) polarization free energy of solvation -85.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds