Wall clock time and date at job start Tue Mar 31 2020 02:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46967 * 2 1 4 4 N 1.46501 * 109.46948 * 179.97438 * 3 2 1 5 5 C 1.36947 * 120.00024 * 270.00080 * 4 3 2 6 6 H 1.07998 * 119.99919 * 326.21396 * 5 4 3 7 7 C 1.38805 * 119.99973 * 146.21494 * 5 4 3 8 8 N 1.31618 * 120.00094 * 337.68741 * 7 5 4 9 9 Si 1.86800 * 119.99990 * 157.68245 * 7 5 4 10 10 H 1.48496 * 109.47084 * 90.00058 * 9 7 5 11 11 H 1.48496 * 109.47272 * 210.00228 * 9 7 5 12 12 H 1.48497 * 109.47209 * 330.00260 * 9 7 5 13 13 C 1.46497 * 120.00149 * 89.99862 * 4 3 2 14 14 C 1.53000 * 109.47108 * 85.79094 * 13 4 3 15 15 N 1.46499 * 109.47375 * 180.02562 * 14 13 4 16 16 C 1.34771 * 120.00208 * 179.97438 * 15 14 13 17 17 O 1.21283 * 120.00246 * 359.97438 * 16 15 14 18 18 C 1.50705 * 120.00270 * 179.97438 * 16 15 14 19 19 C 1.52994 * 115.55075 * 179.97438 * 18 16 15 20 20 C 1.53004 * 117.49893 * 34.33607 * 19 18 16 21 21 C 1.53002 * 117.50180 * 325.67334 * 19 18 16 22 22 C 1.53001 * 117.49204 * 34.33024 * 18 16 15 23 23 C 1.53002 * 117.49733 * 325.67314 * 18 16 15 24 24 H 1.08995 * 109.47321 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47537 * 300.00110 * 1 2 3 26 26 H 1.08999 * 109.46685 * 59.99991 * 1 2 3 27 27 H 1.08996 * 109.47070 * 239.99936 * 2 1 3 28 28 H 1.08999 * 109.46685 * 120.00008 * 2 1 3 29 29 H 1.08996 * 109.47278 * 60.00063 * 3 2 1 30 30 H 1.08999 * 109.47425 * 299.99555 * 3 2 1 31 31 H 0.97004 * 120.00162 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47071 * 325.78828 * 13 4 3 33 33 H 1.09002 * 109.47029 * 205.78644 * 13 4 3 34 34 H 1.09004 * 109.47167 * 300.00082 * 14 13 4 35 35 H 1.09000 * 109.47372 * 59.99918 * 14 13 4 36 36 H 0.97000 * 119.99976 * 359.97438 * 15 14 13 37 37 H 1.09005 * 115.55136 * 180.02562 * 19 18 16 38 38 H 1.08996 * 117.50060 * 359.97438 * 20 19 18 39 39 H 1.08994 * 117.49772 * 145.02099 * 20 19 18 40 40 H 1.09001 * 117.49872 * 214.97785 * 21 19 18 41 41 H 1.08999 * 117.49679 * 359.97233 * 21 19 18 42 42 H 1.08994 * 117.50441 * 359.97438 * 22 18 16 43 43 H 1.09008 * 117.49482 * 145.02370 * 22 18 16 44 44 H 1.08996 * 117.49674 * 214.97662 * 23 18 16 45 45 H 1.09004 * 117.49522 * 359.97271 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4427 1.1869 6 1 3.7856 1.9629 2.0430 7 6 5.4014 0.7742 1.2890 8 7 5.6910 -0.1957 0.4477 9 14 6.6218 1.2513 2.6203 10 1 6.3600 0.4492 3.8423 11 1 8.0032 0.9890 2.1426 12 1 6.4725 2.6949 2.9345 13 6 4.2380 1.4423 -1.2678 14 6 4.4016 2.8808 -1.7625 15 7 5.1341 2.8806 -3.0312 16 6 5.3965 4.0444 -3.6580 17 8 5.0259 5.0920 -3.1720 18 6 6.1506 4.0443 -4.9629 19 6 6.3919 5.4207 -5.5857 20 6 6.6272 6.5954 -4.6340 21 6 5.3055 6.4815 -5.3978 22 6 5.9149 2.8699 -5.9147 23 6 7.2367 2.9831 -5.1510 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 6.5380 -0.6631 0.5193 32 1 3.6840 0.8643 -2.0075 33 1 5.2210 0.9952 -1.1192 34 1 3.4186 3.3279 -1.9110 35 1 4.9555 3.4587 -1.0228 36 1 5.4302 2.0428 -3.4202 37 1 6.9369 5.4206 -6.5297 38 1 6.6097 6.3877 -3.5642 39 1 7.3270 7.3682 -4.9519 40 1 5.1364 7.1795 -6.2178 41 1 4.4186 6.1986 -4.8308 42 1 5.2148 2.0972 -5.5971 43 1 5.9325 3.0778 -6.9846 44 1 8.1232 3.2656 -5.7187 45 1 7.4060 2.2854 -4.3308 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731865553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:07 Heat of formation + Delta-G solvation = 25.704150 kcal Electronic energy + Delta-G solvation = -22512.067248 eV Core-core repulsion = 19338.659227 eV Total energy + Delta-G solvation = -3173.408021 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.26536 -37.19683 -36.34769 -35.65010 -33.85827 -32.78654 -30.78485 -28.17928 -25.57230 -24.81478 -23.38899 -22.75509 -21.94438 -21.77115 -21.14231 -19.92145 -19.16007 -16.89365 -16.42374 -16.01852 -15.18418 -15.03281 -14.65588 -14.52009 -14.25400 -13.85900 -13.59617 -13.14135 -12.99175 -12.70140 -12.57468 -12.24070 -11.94314 -11.77002 -11.39403 -11.30516 -11.11518 -11.00574 -10.87417 -10.84657 -10.75580 -10.50165 -10.29260 -10.07043 -9.96354 -9.93661 -9.68926 -9.40836 -9.24729 -8.58958 -8.46190 -6.69736 -5.86450 -3.38653 2.69552 3.32882 3.41368 3.46163 3.52661 3.69984 4.21071 4.39068 4.45307 4.56113 4.89622 5.06510 5.15177 5.26758 5.29510 5.36322 5.46438 5.49218 5.73770 5.76032 5.79082 5.82114 5.85993 5.94440 6.00778 6.08203 6.13336 6.20096 6.27653 6.38517 6.50261 6.52078 6.53177 6.62337 6.68897 6.89546 7.01578 7.04690 7.23876 7.56454 7.76964 7.93244 8.43267 8.60183 9.11523 9.75160 10.30554 11.15221 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.004706 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.630674 B = 5948.172492 C = 6859.110188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.256 4.256 6 H 0.064 0.936 7 C 0.009 3.991 8 N -0.889 5.889 9 Si 0.896 3.104 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.135 3.865 14 C 0.100 3.900 15 N -0.718 5.718 16 C 0.541 3.459 17 O -0.538 6.538 18 C -0.124 4.124 19 C -0.116 4.116 20 C -0.168 4.168 21 C -0.168 4.168 22 C -0.157 4.157 23 C -0.157 4.157 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.033 0.967 31 H 0.254 0.746 32 H 0.026 0.974 33 H 0.106 0.894 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.395 0.605 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.049 4.667 -12.728 13.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.386 4.386 6 H 0.081 0.919 7 C -0.190 4.190 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.212 1.212 11 H -0.215 1.215 12 H -0.203 1.203 13 C 0.008 3.992 14 C -0.026 4.026 15 N -0.369 5.369 16 C 0.327 3.673 17 O -0.417 6.417 18 C -0.128 4.128 19 C -0.134 4.134 20 C -0.205 4.205 21 C -0.205 4.205 22 C -0.194 4.194 23 C -0.194 4.194 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.123 0.877 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.229 0.771 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.101 5.303 -12.323 13.416 hybrid contribution 0.863 -0.303 0.431 1.011 sum 0.762 5.000 -11.892 12.923 Atomic orbital electron populations 1.21758 0.97756 1.00319 1.00723 1.22068 0.93060 1.00776 1.02034 1.20969 0.85057 0.93525 0.98362 1.43699 0.99473 1.84900 1.01928 1.19097 1.02755 1.26367 0.90378 0.91858 1.25064 1.00594 0.95230 0.98144 1.69969 1.23511 1.20540 1.39172 0.86410 0.80797 0.78719 0.81596 1.21236 1.21485 1.20298 1.21074 1.01198 0.90397 0.86553 1.22351 0.94694 1.02797 0.82720 1.46082 1.57745 1.08216 1.24816 1.19407 0.79312 0.84049 0.84502 1.90619 1.53041 1.31039 1.66952 1.21021 1.03981 0.91852 0.95904 1.21351 1.05002 0.87405 0.99689 1.23050 0.99097 0.98648 0.99664 1.23039 0.94606 1.00512 1.02310 1.23096 0.99814 0.98465 0.98038 1.23120 0.92974 1.00039 1.03262 0.93875 0.93376 0.93682 0.93131 0.91874 0.93828 0.94848 0.93564 0.95603 0.87676 0.93315 0.91754 0.77087 0.87627 0.87244 0.89824 0.89858 0.87328 0.87995 0.87804 0.87776 0.87796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 37.16 0.37 -1.89 16 2 C -0.14 -2.69 6.26 -26.73 -0.17 -2.86 16 3 C 0.15 3.04 5.69 -4.04 -0.02 3.02 16 4 N -0.58 -13.90 2.45 -173.24 -0.43 -14.33 16 5 C -0.26 -6.80 9.49 -15.06 -0.14 -6.95 16 6 H 0.06 1.69 7.92 -52.49 -0.42 1.28 16 7 C 0.01 0.25 4.93 -17.43 -0.09 0.16 16 8 N -0.89 -24.37 11.32 55.49 0.63 -23.75 16 9 Si 0.90 21.26 29.61 -169.99 -5.03 16.22 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 C 0.14 2.98 5.37 -4.04 -0.02 2.96 16 14 C 0.10 2.01 6.00 -4.04 -0.02 1.98 16 15 N -0.72 -12.01 5.35 -60.29 -0.32 -12.34 16 16 C 0.54 9.08 7.24 -10.99 -0.08 9.00 16 17 O -0.54 -10.65 11.83 5.55 0.07 -10.58 16 18 C -0.12 -1.60 2.46 -155.66 -0.38 -1.99 16 19 C -0.12 -1.43 5.84 -90.62 -0.53 -1.96 16 20 C -0.17 -2.26 9.66 -26.69 -0.26 -2.52 16 21 C -0.17 -2.21 9.66 -26.69 -0.26 -2.47 16 22 C -0.16 -1.58 9.60 -26.69 -0.26 -1.83 16 23 C -0.16 -1.65 9.60 -26.69 -0.26 -1.90 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.04 0.90 8.04 -51.93 -0.42 0.48 16 30 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 31 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.03 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.11 2.60 5.32 -51.93 -0.28 2.32 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.40 5.74 6.66 -40.82 -0.27 5.47 16 37 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.11 1.79 6.28 -51.93 -0.33 1.46 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.11 1.71 6.28 -51.93 -0.33 1.39 16 42 H 0.10 1.00 7.55 -51.93 -0.39 0.61 16 43 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 44 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.10 1.13 7.55 -51.93 -0.39 0.74 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -29.03 361.38 -9.62 -38.66 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -7.87 Total: 7.91 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -2.12 Total: -7.25 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.12 Total: -50.41 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.58 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.03 -9.62 -38.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731865553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.359 kcal (2) G-P(sol) polarization free energy of solvation -29.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds