Wall clock time and date at job start Tue Mar 31 2020 02:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46967 * 2 1 4 4 N 1.46501 * 109.46948 * 179.97438 * 3 2 1 5 5 C 1.36947 * 120.00024 * 270.00080 * 4 3 2 6 6 H 1.07998 * 119.99919 * 326.21396 * 5 4 3 7 7 C 1.38805 * 119.99973 * 146.21494 * 5 4 3 8 8 N 1.31618 * 120.00094 * 337.68741 * 7 5 4 9 9 Si 1.86800 * 119.99990 * 157.68245 * 7 5 4 10 10 H 1.48496 * 109.47084 * 90.00058 * 9 7 5 11 11 H 1.48496 * 109.47272 * 210.00228 * 9 7 5 12 12 H 1.48497 * 109.47209 * 330.00260 * 9 7 5 13 13 C 1.46497 * 120.00149 * 89.99862 * 4 3 2 14 14 C 1.53000 * 109.47108 * 85.79094 * 13 4 3 15 15 N 1.46499 * 109.47375 * 180.02562 * 14 13 4 16 16 C 1.34771 * 120.00208 * 179.97438 * 15 14 13 17 17 O 1.21283 * 120.00246 * 359.97438 * 16 15 14 18 18 C 1.50705 * 120.00270 * 179.97438 * 16 15 14 19 19 C 1.52994 * 115.55075 * 179.97438 * 18 16 15 20 20 C 1.53004 * 117.49893 * 34.33607 * 19 18 16 21 21 C 1.53002 * 117.50180 * 325.67334 * 19 18 16 22 22 C 1.53001 * 117.49204 * 34.33024 * 18 16 15 23 23 C 1.53002 * 117.49733 * 325.67314 * 18 16 15 24 24 H 1.08995 * 109.47321 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47537 * 300.00110 * 1 2 3 26 26 H 1.08999 * 109.46685 * 59.99991 * 1 2 3 27 27 H 1.08996 * 109.47070 * 239.99936 * 2 1 3 28 28 H 1.08999 * 109.46685 * 120.00008 * 2 1 3 29 29 H 1.08996 * 109.47278 * 60.00063 * 3 2 1 30 30 H 1.08999 * 109.47425 * 299.99555 * 3 2 1 31 31 H 0.97004 * 120.00162 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47071 * 325.78828 * 13 4 3 33 33 H 1.09002 * 109.47029 * 205.78644 * 13 4 3 34 34 H 1.09004 * 109.47167 * 300.00082 * 14 13 4 35 35 H 1.09000 * 109.47372 * 59.99918 * 14 13 4 36 36 H 0.97000 * 119.99976 * 359.97438 * 15 14 13 37 37 H 1.09005 * 115.55136 * 180.02562 * 19 18 16 38 38 H 1.08996 * 117.50060 * 359.97438 * 20 19 18 39 39 H 1.08994 * 117.49772 * 145.02099 * 20 19 18 40 40 H 1.09001 * 117.49872 * 214.97785 * 21 19 18 41 41 H 1.08999 * 117.49679 * 359.97233 * 21 19 18 42 42 H 1.08994 * 117.50441 * 359.97438 * 22 18 16 43 43 H 1.09008 * 117.49482 * 145.02370 * 22 18 16 44 44 H 1.08996 * 117.49674 * 214.97662 * 23 18 16 45 45 H 1.09004 * 117.49522 * 359.97271 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4427 1.1869 6 1 3.7856 1.9629 2.0430 7 6 5.4014 0.7742 1.2890 8 7 5.6910 -0.1957 0.4477 9 14 6.6218 1.2513 2.6203 10 1 6.3600 0.4492 3.8423 11 1 8.0032 0.9890 2.1426 12 1 6.4725 2.6949 2.9345 13 6 4.2380 1.4423 -1.2678 14 6 4.4016 2.8808 -1.7625 15 7 5.1341 2.8806 -3.0312 16 6 5.3965 4.0444 -3.6580 17 8 5.0259 5.0920 -3.1720 18 6 6.1506 4.0443 -4.9629 19 6 6.3919 5.4207 -5.5857 20 6 6.6272 6.5954 -4.6340 21 6 5.3055 6.4815 -5.3978 22 6 5.9149 2.8699 -5.9147 23 6 7.2367 2.9831 -5.1510 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 6.5380 -0.6631 0.5193 32 1 3.6840 0.8643 -2.0075 33 1 5.2210 0.9952 -1.1192 34 1 3.4186 3.3279 -1.9110 35 1 4.9555 3.4587 -1.0228 36 1 5.4302 2.0428 -3.4202 37 1 6.9369 5.4206 -6.5297 38 1 6.6097 6.3877 -3.5642 39 1 7.3270 7.3682 -4.9519 40 1 5.1364 7.1795 -6.2178 41 1 4.4186 6.1986 -4.8308 42 1 5.2148 2.0972 -5.5971 43 1 5.9325 3.0778 -6.9846 44 1 8.1232 3.2656 -5.7187 45 1 7.4060 2.2854 -4.3308 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731865553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:06 Heat of formation + Delta-G solvation = 10.246344 kcal Electronic energy + Delta-G solvation = -22512.737549 eV Core-core repulsion = 19338.659227 eV Total energy + Delta-G solvation = -3174.078322 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.46881 -38.58095 -37.89532 -36.77820 -35.24903 -34.53198 -32.58931 -29.83296 -27.34783 -26.03720 -24.87444 -23.62245 -23.27373 -22.89914 -22.55505 -21.58381 -20.52967 -18.66029 -17.67962 -17.25867 -16.94927 -16.33481 -16.30056 -15.87130 -15.71588 -15.48030 -14.81606 -14.62368 -14.40002 -14.20962 -14.01134 -13.65400 -13.30407 -13.06705 -12.75957 -12.61483 -12.56984 -12.52032 -12.34366 -12.18142 -12.16162 -12.05345 -11.81111 -11.72528 -11.72048 -11.34322 -11.07670 -10.57579 -10.53069 -10.36896 -10.01832 -8.65855 -7.89034 -5.44098 1.41804 1.45906 1.49032 1.54695 2.16237 2.49990 2.68513 3.20899 3.28184 3.46051 3.54554 3.74385 3.97315 3.99784 4.23687 4.25060 4.32981 4.37031 4.38058 4.38660 4.53663 4.66138 4.73533 4.74906 4.80827 4.86784 4.86902 4.94812 4.99523 5.05237 5.14407 5.18684 5.21781 5.26526 5.33267 5.44726 5.44940 5.47182 5.59657 5.65110 5.77720 6.41697 6.59775 7.11715 7.27746 7.81239 8.31429 9.09509 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.004706 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.630674 B = 5948.172492 C = 6859.110188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.144 3.856 4 N -0.597 5.597 5 C -0.269 4.269 6 H 0.054 0.946 7 C -0.030 4.030 8 N -0.910 5.910 9 Si 0.949 3.051 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.281 1.281 13 C 0.145 3.855 14 C 0.123 3.877 15 N -0.714 5.714 16 C 0.534 3.466 17 O -0.575 6.575 18 C -0.151 4.151 19 C -0.099 4.099 20 C -0.181 4.181 21 C -0.174 4.174 22 C -0.135 4.135 23 C -0.145 4.145 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.032 0.968 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.253 0.747 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.029 0.971 36 H 0.407 0.593 37 H 0.141 0.859 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.302 4.482 -15.011 15.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.018 3.982 4 N -0.318 5.318 5 C -0.399 4.399 6 H 0.072 0.928 7 C -0.228 4.228 8 N -0.554 5.554 9 Si 0.777 3.223 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.206 1.206 13 C 0.018 3.982 14 C -0.004 4.004 15 N -0.365 5.365 16 C 0.322 3.678 17 O -0.455 6.455 18 C -0.154 4.154 19 C -0.117 4.117 20 C -0.218 4.218 21 C -0.211 4.211 22 C -0.172 4.172 23 C -0.182 4.182 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.243 0.757 37 H 0.159 0.841 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.094 0.906 42 H 0.121 0.879 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.143 5.102 -14.623 15.488 hybrid contribution 0.737 -0.222 1.149 1.383 sum 0.880 4.881 -13.474 14.357 Atomic orbital electron populations 1.21666 0.94230 1.01748 1.01936 1.21897 0.96079 0.98979 0.99967 1.21092 0.83369 0.94669 0.99037 1.43922 1.00900 1.85174 1.01778 1.19249 1.03461 1.26038 0.91132 0.92789 1.25615 1.01741 0.95363 1.00084 1.70061 1.23672 1.21211 1.40429 0.85577 0.78932 0.78061 0.79699 1.20809 1.21385 1.20611 1.20909 0.99913 0.91141 0.86262 1.21798 0.94188 1.00844 0.83544 1.45927 1.57653 1.09247 1.23694 1.20213 0.78826 0.83080 0.85688 1.90612 1.54445 1.32246 1.68237 1.20993 1.06009 0.93687 0.94715 1.21540 1.03786 0.86267 1.00136 1.22972 1.00159 1.00746 0.97936 1.22975 0.93363 1.02057 1.02691 1.23267 0.99089 0.95942 0.98896 1.23252 0.93811 0.97984 1.03196 0.92371 0.92612 0.92010 0.94155 0.94928 0.94042 0.93162 0.93728 0.94426 0.90025 0.93876 0.95243 0.75652 0.84095 0.91035 0.87551 0.87351 0.90645 0.87908 0.85008 0.85304 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.91 71.98 0.71 -3.23 16 2 C -0.13 -4.96 6.26 30.59 0.19 -4.76 16 3 C 0.14 5.95 5.69 86.38 0.49 6.44 16 4 N -0.60 -29.23 2.45 -702.01 -1.72 -30.95 16 5 C -0.27 -14.61 9.49 84.03 0.80 -13.81 16 6 H 0.05 2.98 7.92 -2.91 -0.02 2.95 16 7 C -0.03 -1.65 4.93 84.86 0.42 -1.24 16 8 N -0.91 -50.70 11.32 21.65 0.24 -50.46 16 9 Si 0.95 44.43 29.61 68.60 2.03 46.47 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 C 0.15 6.51 5.37 86.38 0.46 6.98 16 14 C 0.12 5.11 6.00 86.38 0.52 5.63 16 15 N -0.71 -24.17 5.35 -463.06 -2.48 -26.65 16 16 C 0.53 18.10 7.24 87.66 0.63 18.74 16 17 O -0.57 -23.78 11.83 -3.04 -0.04 -23.82 16 18 C -0.15 -3.62 2.46 -52.93 -0.13 -3.75 16 19 C -0.10 -2.20 5.84 -10.79 -0.06 -2.26 16 20 C -0.18 -4.79 9.66 30.62 0.30 -4.49 16 21 C -0.17 -4.44 9.66 30.62 0.30 -4.14 16 22 C -0.13 -2.25 9.60 30.62 0.29 -1.95 16 23 C -0.15 -2.63 9.60 30.62 0.29 -2.33 16 24 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.04 1.71 8.04 -2.39 -0.02 1.69 16 30 H 0.05 1.89 8.07 -2.39 -0.02 1.87 16 31 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 32 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 33 H 0.08 4.14 5.32 -2.39 -0.01 4.13 16 34 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.41 11.69 6.66 -92.71 -0.62 11.07 16 37 H 0.14 2.17 8.14 -2.38 -0.02 2.15 16 38 H 0.07 2.45 6.28 -2.39 -0.01 2.44 16 39 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.08 2.45 6.28 -2.39 -0.01 2.43 16 42 H 0.10 1.72 7.55 -2.39 -0.02 1.70 16 43 H 0.13 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.10 1.91 7.55 -2.39 -0.02 1.89 16 Total: -1.00 -65.42 361.38 3.59 -61.83 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.34 Total: 27.77 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 5.21 Total: -4.19 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -3.96 Total: -108.06 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.04 Total: -23.82 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.47 kcal Total: -65.42 3.59 -61.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731865553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.078 kcal (2) G-P(sol) polarization free energy of solvation -65.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds