Wall clock time and date at job start Tue Mar 31 2020 02:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47225 * 2 1 4 4 N 1.46498 * 109.47243 * 179.97438 * 3 2 1 5 5 C 1.36942 * 120.00058 * 275.04045 * 4 3 2 6 6 H 1.07995 * 119.99691 * 37.87456 * 5 4 3 7 7 C 1.38813 * 119.99557 * 217.87439 * 5 4 3 8 8 N 1.31607 * 120.00495 * 21.36584 * 7 5 4 9 9 Si 1.86800 * 119.99344 * 201.36613 * 7 5 4 10 10 H 1.48497 * 109.47418 * 60.00198 * 9 7 5 11 11 H 1.48507 * 109.47006 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47249 * 299.99883 * 9 7 5 13 13 C 1.46500 * 119.99759 * 95.31758 * 4 3 2 14 14 C 1.53006 * 109.47135 * 269.72152 * 13 4 3 15 15 N 1.46500 * 109.47135 * 179.97438 * 14 13 4 16 16 C 1.34772 * 119.99593 * 180.02562 * 15 14 13 17 17 O 1.21279 * 120.00562 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99722 * 180.02562 * 16 15 14 19 19 H 1.09002 * 115.52860 * 34.41642 * 18 16 15 20 20 C 1.53003 * 117.45999 * 179.91551 * 18 16 15 21 21 H 1.09001 * 119.29799 * 356.28680 * 20 18 16 22 22 C 1.54265 * 118.19855 * 201.21224 * 20 18 16 23 23 C 1.54813 * 104.21468 * 272.19755 * 22 20 18 24 24 C 1.54894 * 102.74436 * 37.91980 * 23 22 20 25 25 C 1.53002 * 117.46054 * 248.91951 * 18 16 15 26 26 H 1.09008 * 119.29549 * 3.70616 * 25 18 16 27 27 H 1.09000 * 109.47237 * 59.99869 * 1 2 3 28 28 H 1.08998 * 109.47244 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47349 * 299.99937 * 1 2 3 30 30 H 1.08994 * 109.47329 * 239.99777 * 2 1 3 31 31 H 1.09004 * 109.47111 * 119.99389 * 2 1 3 32 32 H 1.09003 * 109.46905 * 59.99791 * 3 2 1 33 33 H 1.08997 * 109.46620 * 300.00118 * 3 2 1 34 34 H 0.96996 * 120.00404 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47545 * 29.72027 * 13 4 3 36 36 H 1.09003 * 109.47305 * 149.72583 * 13 4 3 37 37 H 1.08999 * 109.47241 * 300.00588 * 14 13 4 38 38 H 1.09003 * 109.46672 * 60.00044 * 14 13 4 39 39 H 0.97001 * 120.00051 * 0.02562 * 15 14 13 40 40 H 1.09011 * 110.48730 * 30.88969 * 22 20 18 41 41 H 1.08995 * 110.48795 * 153.52955 * 22 20 18 42 42 H 1.08995 * 110.73516 * 279.61808 * 23 22 20 43 43 H 1.09005 * 110.94148 * 156.31224 * 23 22 20 44 44 H 1.09007 * 110.48581 * 203.40735 * 24 23 22 45 45 H 1.08996 * 110.59918 * 80.81823 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.3385 1.1823 6 1 3.8195 0.6931 1.9653 7 6 5.3580 2.0627 1.3735 8 7 5.5948 3.1340 0.6467 9 14 6.5946 1.5164 2.6626 10 1 7.0697 0.1461 2.3435 11 1 7.7481 2.4517 2.6696 12 1 5.9489 1.5175 3.9999 13 6 4.2380 1.5600 -1.2624 14 6 4.4993 0.1641 -1.8321 15 7 5.2317 0.2816 -3.0954 16 6 5.5733 -0.8269 -3.7817 17 8 5.2747 -1.9215 -3.3534 18 6 6.3272 -0.7061 -5.0810 19 1 7.0405 0.1163 -5.1355 20 6 6.6871 -2.0018 -5.8110 21 1 6.4469 -2.9590 -5.3482 22 6 7.8441 -1.9668 -6.8306 23 6 7.1662 -1.5578 -8.1610 24 6 6.1108 -0.5211 -7.7021 25 6 5.5852 -1.0828 -6.3650 26 1 4.5332 -1.3631 -6.3104 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 6.4113 3.6402 0.7806 35 1 3.6471 2.1376 -1.9731 36 1 5.1882 2.0639 -1.0856 37 1 5.0902 -0.4136 -1.1213 38 1 3.5490 -0.3398 -2.0089 39 1 5.4709 1.1571 -3.4378 40 1 8.5883 -1.2258 -6.5380 41 1 8.3013 -2.9519 -6.9229 42 1 6.6857 -2.4168 -8.6293 43 1 7.8858 -1.1014 -8.8408 44 1 5.3028 -0.4513 -8.4305 45 1 6.5722 0.4547 -7.5509 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731866704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:57 Heat of formation + Delta-G solvation = -12.681207 kcal Electronic energy + Delta-G solvation = -22081.656360 eV Core-core repulsion = 18906.583825 eV Total energy + Delta-G solvation = -3175.072535 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.26139 -38.24764 -36.43077 -34.17428 -32.87177 -31.91100 -30.77141 -28.42718 -28.23579 -25.56627 -24.50824 -22.86795 -21.06463 -20.69337 -20.25715 -19.83707 -19.67179 -17.40882 -16.55776 -15.72254 -15.15177 -15.13953 -14.76831 -14.51674 -14.27182 -13.84092 -13.38240 -13.32943 -12.98496 -12.95072 -12.74594 -12.50683 -11.62866 -11.57460 -11.52537 -11.42498 -11.33406 -11.17604 -11.05244 -10.93710 -10.73089 -10.45214 -10.36154 -10.18545 -10.07432 -9.92908 -9.87638 -9.72524 -9.39126 -8.55770 -8.42358 -6.62344 -5.84041 -3.43195 2.72295 3.35157 3.41268 3.45081 3.47118 3.73073 4.41836 4.49444 4.57746 4.61072 5.02270 5.06891 5.18928 5.25337 5.27500 5.29201 5.42422 5.49199 5.53454 5.63236 5.67238 5.76882 5.81478 5.87177 5.93982 6.04067 6.12669 6.13214 6.23647 6.25391 6.28770 6.43159 6.54503 6.62932 6.66860 6.91418 6.97998 7.03291 7.18755 7.54228 7.79592 7.97393 8.47512 8.63092 9.14133 9.75976 10.34022 11.15853 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.004068 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.016132 B = 6881.576346 C = 7993.553554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.263 4.263 6 H 0.061 0.939 7 C 0.015 3.985 8 N -0.888 5.888 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.138 3.862 14 C 0.097 3.903 15 N -0.715 5.715 16 C 0.536 3.464 17 O -0.549 6.549 18 C -0.160 4.160 19 H 0.119 0.881 20 C -0.133 4.133 21 H 0.121 0.879 22 C -0.097 4.097 23 C -0.123 4.123 24 C -0.096 4.096 25 C -0.141 4.141 26 H 0.113 0.887 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.256 0.744 35 H 0.028 0.972 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.398 0.602 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.671 -4.838 -15.635 16.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.392 4.392 6 H 0.079 0.921 7 C -0.185 4.185 8 N -0.530 5.530 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.010 3.990 14 C -0.028 4.028 15 N -0.365 5.365 16 C 0.321 3.679 17 O -0.427 6.427 18 C -0.181 4.181 19 H 0.136 0.864 20 C -0.151 4.151 21 H 0.139 0.861 22 C -0.134 4.134 23 C -0.160 4.160 24 C -0.133 4.133 25 C -0.160 4.160 26 H 0.131 0.869 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.568 -5.454 -15.266 16.221 hybrid contribution 0.789 0.134 0.625 1.015 sum 1.357 -5.320 -14.642 15.637 Atomic orbital electron populations 1.21721 0.97340 1.00393 1.00991 1.22186 0.93798 1.00959 1.01565 1.20938 0.85081 0.92952 0.98895 1.43598 0.99422 1.84853 1.02049 1.18988 1.05975 1.20350 0.93906 0.92108 1.25172 1.00795 0.94484 0.98089 1.69976 1.25920 1.14654 1.42415 0.86475 0.81022 0.78288 0.81670 1.20772 1.21563 1.20585 1.21054 1.00263 0.91210 0.86424 1.22460 0.94814 1.02733 0.82762 1.46055 1.57617 1.08385 1.24422 1.19547 0.79202 0.84574 0.84552 1.90670 1.55441 1.26822 1.69781 1.22418 1.03109 1.01031 0.91518 0.86352 1.23223 0.97052 0.94897 0.99976 0.86122 1.21983 0.96303 1.01896 0.93245 1.22680 0.97573 0.98750 0.97044 1.21996 0.98323 0.98588 0.94418 1.23214 0.97884 1.03615 0.91241 0.86900 0.93476 0.93818 0.93199 0.92969 0.92366 0.93581 0.94783 0.93456 0.95331 0.88415 0.91798 0.93083 0.76863 0.91219 0.90962 0.91241 0.91258 0.90989 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.16 0.37 -1.84 16 2 C -0.15 -2.70 6.23 -26.73 -0.17 -2.86 16 3 C 0.15 3.09 5.72 -4.04 -0.02 3.07 16 4 N -0.58 -14.10 2.43 -173.23 -0.42 -14.52 16 5 C -0.26 -7.07 9.45 -15.06 -0.14 -7.21 16 6 H 0.06 1.65 7.92 -52.49 -0.42 1.23 16 7 C 0.02 0.41 4.95 -17.44 -0.09 0.32 16 8 N -0.89 -24.74 11.47 55.49 0.64 -24.10 16 9 Si 0.90 21.46 29.60 -169.99 -5.03 16.43 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.14 3.08 5.45 -4.04 -0.02 3.06 16 14 C 0.10 2.02 6.00 -4.04 -0.02 2.00 16 15 N -0.72 -12.33 5.56 -60.29 -0.33 -12.66 16 16 C 0.54 9.31 7.61 -10.99 -0.08 9.23 16 17 O -0.55 -11.69 16.32 5.56 0.09 -11.60 16 18 C -0.16 -2.07 5.74 -91.77 -0.53 -2.60 16 19 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 20 C -0.13 -1.59 6.39 -89.54 -0.57 -2.16 16 21 H 0.12 1.65 7.78 -51.93 -0.40 1.24 16 22 C -0.10 -0.88 6.62 -25.11 -0.17 -1.04 16 23 C -0.12 -0.95 6.91 -24.78 -0.17 -1.12 16 24 C -0.10 -0.81 6.62 -25.07 -0.17 -0.98 16 25 C -0.14 -1.58 6.64 -89.54 -0.59 -2.18 16 26 H 0.11 1.35 8.14 -51.92 -0.42 0.93 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 1.00 6.66 -51.93 -0.35 0.65 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 33 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 34 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.03 0.60 7.85 -51.93 -0.41 0.19 16 36 H 0.10 2.45 5.52 -51.93 -0.29 2.16 16 37 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.05 1.08 6.66 -51.93 -0.35 0.74 16 39 H 0.40 5.81 8.47 -40.82 -0.35 5.47 16 40 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 361.88 15.07 5.45 5.45 Total: -1.00 -30.31 361.88 -9.99 -40.30 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -8.01 Total: 5.01 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -2.38 Total: -4.32 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.12 Total: -51.28 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.31 -9.99 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731866704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.622 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds