Wall clock time and date at job start Tue Mar 31 2020 02:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47225 * 2 1 4 4 N 1.46498 * 109.47243 * 179.97438 * 3 2 1 5 5 C 1.36942 * 120.00058 * 275.04045 * 4 3 2 6 6 H 1.07995 * 119.99691 * 37.87456 * 5 4 3 7 7 C 1.38813 * 119.99557 * 217.87439 * 5 4 3 8 8 N 1.31607 * 120.00495 * 21.36584 * 7 5 4 9 9 Si 1.86800 * 119.99344 * 201.36613 * 7 5 4 10 10 H 1.48497 * 109.47418 * 60.00198 * 9 7 5 11 11 H 1.48507 * 109.47006 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47249 * 299.99883 * 9 7 5 13 13 C 1.46500 * 119.99759 * 95.31758 * 4 3 2 14 14 C 1.53006 * 109.47135 * 269.72152 * 13 4 3 15 15 N 1.46500 * 109.47135 * 179.97438 * 14 13 4 16 16 C 1.34772 * 119.99593 * 180.02562 * 15 14 13 17 17 O 1.21279 * 120.00562 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99722 * 180.02562 * 16 15 14 19 19 H 1.09002 * 115.52860 * 34.41642 * 18 16 15 20 20 C 1.53003 * 117.45999 * 179.91551 * 18 16 15 21 21 H 1.09001 * 119.29799 * 356.28680 * 20 18 16 22 22 C 1.54265 * 118.19855 * 201.21224 * 20 18 16 23 23 C 1.54813 * 104.21468 * 272.19755 * 22 20 18 24 24 C 1.54894 * 102.74436 * 37.91980 * 23 22 20 25 25 C 1.53002 * 117.46054 * 248.91951 * 18 16 15 26 26 H 1.09008 * 119.29549 * 3.70616 * 25 18 16 27 27 H 1.09000 * 109.47237 * 59.99869 * 1 2 3 28 28 H 1.08998 * 109.47244 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47349 * 299.99937 * 1 2 3 30 30 H 1.08994 * 109.47329 * 239.99777 * 2 1 3 31 31 H 1.09004 * 109.47111 * 119.99389 * 2 1 3 32 32 H 1.09003 * 109.46905 * 59.99791 * 3 2 1 33 33 H 1.08997 * 109.46620 * 300.00118 * 3 2 1 34 34 H 0.96996 * 120.00404 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47545 * 29.72027 * 13 4 3 36 36 H 1.09003 * 109.47305 * 149.72583 * 13 4 3 37 37 H 1.08999 * 109.47241 * 300.00588 * 14 13 4 38 38 H 1.09003 * 109.46672 * 60.00044 * 14 13 4 39 39 H 0.97001 * 120.00051 * 0.02562 * 15 14 13 40 40 H 1.09011 * 110.48730 * 30.88969 * 22 20 18 41 41 H 1.08995 * 110.48795 * 153.52955 * 22 20 18 42 42 H 1.08995 * 110.73516 * 279.61808 * 23 22 20 43 43 H 1.09005 * 110.94148 * 156.31224 * 23 22 20 44 44 H 1.09007 * 110.48581 * 203.40735 * 24 23 22 45 45 H 1.08996 * 110.59918 * 80.81823 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.3385 1.1823 6 1 3.8195 0.6931 1.9653 7 6 5.3580 2.0627 1.3735 8 7 5.5948 3.1340 0.6467 9 14 6.5946 1.5164 2.6626 10 1 7.0697 0.1461 2.3435 11 1 7.7481 2.4517 2.6696 12 1 5.9489 1.5175 3.9999 13 6 4.2380 1.5600 -1.2624 14 6 4.4993 0.1641 -1.8321 15 7 5.2317 0.2816 -3.0954 16 6 5.5733 -0.8269 -3.7817 17 8 5.2747 -1.9215 -3.3534 18 6 6.3272 -0.7061 -5.0810 19 1 7.0405 0.1163 -5.1355 20 6 6.6871 -2.0018 -5.8110 21 1 6.4469 -2.9590 -5.3482 22 6 7.8441 -1.9668 -6.8306 23 6 7.1662 -1.5578 -8.1610 24 6 6.1108 -0.5211 -7.7021 25 6 5.5852 -1.0828 -6.3650 26 1 4.5332 -1.3631 -6.3104 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 6.4113 3.6402 0.7806 35 1 3.6471 2.1376 -1.9731 36 1 5.1882 2.0639 -1.0856 37 1 5.0902 -0.4136 -1.1213 38 1 3.5490 -0.3398 -2.0089 39 1 5.4709 1.1571 -3.4378 40 1 8.5883 -1.2258 -6.5380 41 1 8.3013 -2.9519 -6.9229 42 1 6.6857 -2.4168 -8.6293 43 1 7.8858 -1.1014 -8.8408 44 1 5.3028 -0.4513 -8.4305 45 1 6.5722 0.4547 -7.5509 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731866704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:56 Heat of formation + Delta-G solvation = -29.561513 kcal Electronic energy + Delta-G solvation = -22082.388345 eV Core-core repulsion = 18906.583825 eV Total energy + Delta-G solvation = -3175.804520 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.40012 -39.48356 -38.20214 -35.76087 -34.62661 -32.90183 -32.47576 -29.90990 -29.13331 -27.36258 -25.93612 -24.30201 -22.59155 -21.95946 -21.62054 -21.05279 -20.64463 -18.89656 -18.24409 -17.10296 -17.02022 -16.40939 -16.06434 -15.86400 -15.82089 -15.38489 -14.79509 -14.56591 -14.36898 -14.29200 -14.00643 -13.76585 -13.35380 -13.10184 -12.93916 -12.65881 -12.54268 -12.46711 -12.29442 -12.23408 -12.05530 -11.97569 -11.89803 -11.71438 -11.68071 -11.35842 -11.13295 -11.01316 -10.63480 -10.55025 -10.06465 -8.61244 -7.87986 -5.51440 1.41670 1.42645 1.46147 1.52284 2.11122 2.48422 2.69829 3.19262 3.47585 3.70376 3.76102 3.76807 4.07453 4.19001 4.20594 4.25125 4.31748 4.34919 4.47335 4.52222 4.54269 4.66060 4.68914 4.70122 4.82813 4.83307 4.96549 4.99768 5.13392 5.16887 5.20577 5.22420 5.23206 5.24275 5.28732 5.39217 5.41198 5.51356 5.60233 5.63233 5.71284 6.42526 6.57758 7.12118 7.23350 7.80108 8.32581 9.07679 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.004068 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.016132 B = 6881.576346 C = 7993.553554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.275 4.275 6 H 0.051 0.949 7 C -0.025 4.025 8 N -0.909 5.909 9 Si 0.950 3.050 10 H -0.288 1.288 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.147 3.853 14 C 0.120 3.880 15 N -0.708 5.708 16 C 0.532 3.468 17 O -0.594 6.594 18 C -0.167 4.167 19 H 0.143 0.857 20 C -0.141 4.141 21 H 0.095 0.905 22 C -0.093 4.093 23 C -0.117 4.117 24 C -0.091 4.091 25 C -0.130 4.130 26 H 0.101 0.899 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.049 0.951 34 H 0.255 0.745 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.026 0.974 38 H 0.046 0.954 39 H 0.413 0.587 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.844 -4.505 -17.629 18.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.405 4.405 6 H 0.069 0.931 7 C -0.223 4.223 8 N -0.552 5.552 9 Si 0.778 3.222 10 H -0.214 1.214 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.019 3.981 14 C -0.006 4.006 15 N -0.359 5.359 16 C 0.320 3.680 17 O -0.476 6.476 18 C -0.187 4.187 19 H 0.161 0.839 20 C -0.160 4.160 21 H 0.113 0.887 22 C -0.130 4.130 23 C -0.154 4.154 24 C -0.128 4.128 25 C -0.149 4.149 26 H 0.119 0.881 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.064 0.936 39 H 0.249 0.751 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.732 -5.100 -17.282 18.034 hybrid contribution 0.678 -0.006 1.241 1.414 sum 1.410 -5.106 -16.041 16.893 Atomic orbital electron populations 1.21652 0.94133 1.01790 1.02064 1.22015 0.96519 0.98806 1.00123 1.21054 0.83339 0.94482 0.99111 1.43834 1.00873 1.85112 1.01930 1.19134 1.06707 1.20003 0.94692 0.93137 1.25740 1.02009 0.94605 0.99989 1.70062 1.26176 1.15327 1.43674 0.85627 0.79171 0.77379 0.79995 1.21414 1.21168 1.19913 1.20911 0.99218 0.91716 0.86215 1.21929 0.94177 1.01047 0.83497 1.45913 1.57225 1.09492 1.23239 1.20340 0.78499 0.83554 0.85636 1.90644 1.57282 1.28478 1.71191 1.22374 1.03884 1.02743 0.89741 0.83948 1.23317 0.99145 0.93310 1.00238 0.88650 1.22026 0.95345 1.02736 0.92904 1.22681 0.97581 0.98732 0.96453 1.22057 0.99002 0.99149 0.92626 1.23350 0.97222 1.02616 0.91665 0.88072 0.92038 0.92291 0.92490 0.93858 0.94360 0.94537 0.93224 0.93589 0.93677 0.90774 0.95501 0.93614 0.75090 0.90448 0.90263 0.90925 0.89152 0.89651 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.91 71.98 0.71 -3.20 16 2 C -0.13 -4.99 6.23 30.60 0.19 -4.80 16 3 C 0.15 6.09 5.72 86.38 0.49 6.58 16 4 N -0.60 -29.50 2.43 -701.98 -1.71 -31.21 16 5 C -0.28 -15.13 9.45 84.03 0.79 -14.33 16 6 H 0.05 2.82 7.92 -2.91 -0.02 2.80 16 7 C -0.03 -1.38 4.95 84.86 0.42 -0.95 16 8 N -0.91 -51.18 11.47 21.65 0.25 -50.93 16 9 Si 0.95 44.68 29.60 68.60 2.03 46.72 16 10 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 C 0.15 6.64 5.45 86.38 0.47 7.11 16 14 C 0.12 5.11 6.00 86.38 0.52 5.63 16 15 N -0.71 -24.58 5.56 -463.05 -2.57 -27.16 16 16 C 0.53 18.72 7.61 87.66 0.67 19.38 16 17 O -0.59 -26.28 16.32 -3.03 -0.05 -26.33 16 18 C -0.17 -4.16 5.74 -11.54 -0.07 -4.23 16 19 H 0.14 2.85 8.14 -2.39 -0.02 2.83 16 20 C -0.14 -3.27 6.39 -10.09 -0.06 -3.34 16 21 H 0.10 2.69 7.78 -2.39 -0.02 2.68 16 22 C -0.09 -1.46 6.62 31.64 0.21 -1.25 16 23 C -0.12 -1.41 6.91 31.86 0.22 -1.19 16 24 C -0.09 -1.25 6.62 31.67 0.21 -1.04 16 25 C -0.13 -2.72 6.64 -10.10 -0.07 -2.78 16 26 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 1.66 6.66 -2.39 -0.02 1.65 16 31 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.04 1.58 8.08 -2.39 -0.02 1.56 16 33 H 0.05 1.90 7.83 -2.39 -0.02 1.88 16 34 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 35 H 0.04 1.86 7.85 -2.39 -0.02 1.85 16 36 H 0.07 3.78 5.52 -2.39 -0.01 3.76 16 37 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.05 1.99 6.66 -2.39 -0.02 1.97 16 39 H 0.41 11.82 8.47 -92.71 -0.79 11.03 16 40 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.08 0.98 8.14 -2.38 -0.02 0.97 16 45 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -66.89 361.88 2.83 -64.06 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.17 Total: 23.26 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 4.71 Total: 1.58 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -4.03 Total: -109.30 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.05 Total: -26.33 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.72 kcal Total: -66.89 2.83 -64.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731866704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.503 kcal (2) G-P(sol) polarization free energy of solvation -66.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds