Wall clock time and date at job start Tue Mar 31 2020 02:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.51582 * 135.78450 * 2 1 4 4 C 1.53836 * 86.75695 * 154.84368 * 3 2 1 5 5 C 1.52995 * 113.66014 * 270.21584 * 4 3 2 6 6 C 1.50710 * 113.65873 * 139.26924 * 4 3 2 7 7 O 1.21279 * 119.99712 * 359.97438 * 6 4 3 8 8 N 1.34774 * 120.00299 * 179.97438 * 6 4 3 9 9 C 1.46494 * 120.00311 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.47305 * 180.02562 * 9 8 6 11 11 N 1.46501 * 109.47119 * 179.97438 * 10 9 8 12 12 C 1.36934 * 119.99655 * 265.79237 * 11 10 9 13 13 H 1.08005 * 119.99954 * 146.22217 * 12 11 10 14 14 C 1.38810 * 120.00444 * 326.21570 * 12 11 10 15 15 N 1.31625 * 119.99807 * 337.68312 * 14 12 11 16 16 Si 1.86793 * 120.00329 * 157.68485 * 14 12 11 17 17 H 1.48509 * 109.47105 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47456 * 120.00082 * 16 14 12 19 19 H 1.48504 * 109.47289 * 239.99956 * 16 14 12 20 20 C 1.46496 * 119.99874 * 85.78991 * 11 10 9 21 21 C 1.53001 * 109.46901 * 90.00324 * 20 11 10 22 22 C 1.53002 * 109.46890 * 180.02562 * 21 20 11 23 23 C 1.51579 * 135.78144 * 179.97438 * 2 1 3 24 24 H 1.08001 * 119.99910 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.00144 * 180.02562 * 1 2 3 26 26 H 1.08997 * 113.67041 * 40.37307 * 3 2 1 27 27 H 1.09005 * 113.74957 * 269.32137 * 3 2 1 28 28 H 1.09000 * 109.47157 * 298.34018 * 5 4 3 29 29 H 1.09005 * 109.46753 * 58.33620 * 5 4 3 30 30 H 1.09003 * 109.47445 * 178.33368 * 5 4 3 31 31 H 0.97005 * 119.99626 * 359.97438 * 8 6 4 32 32 H 1.08990 * 109.47527 * 59.99223 * 9 8 6 33 33 H 1.09009 * 109.47030 * 299.99553 * 9 8 6 34 34 H 1.09000 * 109.46730 * 299.99518 * 10 9 8 35 35 H 1.08998 * 109.47025 * 59.99602 * 10 9 8 36 36 H 0.96992 * 119.99916 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.46946 * 210.00099 * 20 11 10 38 38 H 1.09002 * 109.47385 * 330.00034 * 20 11 10 39 39 H 1.09000 * 109.47137 * 299.99658 * 21 20 11 40 40 H 1.09002 * 109.47337 * 59.99681 * 21 20 11 41 41 H 1.09002 * 109.47396 * 59.99710 * 22 21 20 42 42 H 1.09004 * 109.46875 * 179.97438 * 22 21 20 43 43 H 1.08999 * 109.46816 * 299.99231 * 22 21 20 44 44 H 1.09003 * 113.66458 * 90.68896 * 23 2 1 45 45 H 1.09004 * 113.66728 * 319.62365 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0571 0.0000 4 6 3.3035 0.0000 0.6529 5 6 3.2462 0.0015 2.1818 6 6 4.7130 -0.0001 0.1194 7 8 5.0342 0.7875 -0.7451 8 7 5.6166 -0.8754 0.6030 9 6 6.9868 -0.8751 0.0849 10 6 7.8014 -1.9573 0.7963 11 7 9.1715 -1.9574 0.2777 12 6 9.5180 -2.8047 -0.7407 13 1 10.2491 -2.4973 -1.4738 14 6 8.9297 -4.0587 -0.8309 15 7 8.4003 -4.6157 0.2379 16 14 8.8892 -4.9559 -2.4687 17 1 9.5457 -4.1211 -3.5068 18 1 9.6101 -6.2482 -2.3432 19 1 7.4792 -5.2115 -2.8585 20 6 10.1708 -1.0510 0.8486 21 6 10.8836 -1.7448 2.0111 22 6 11.9268 -0.7979 2.6078 23 6 2.3963 -1.0571 0.0005 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 2.1797 1.9073 0.6466 27 1 2.7193 1.3547 -0.9977 28 1 3.5890 0.9657 2.5572 29 1 2.2202 -0.1710 2.5070 30 1 3.8883 -0.7889 2.5703 31 1 5.3597 -1.5051 1.2948 32 1 7.4424 0.0990 0.2627 33 1 6.9704 -1.0783 -0.9860 34 1 7.8179 -1.7545 1.8672 35 1 7.3457 -2.9312 0.6179 36 1 7.9889 -5.4917 0.1748 37 1 10.8993 -0.7846 0.0827 38 1 9.6782 -0.1487 1.2108 39 1 10.1551 -2.0111 2.7770 40 1 11.3762 -2.6471 1.6488 41 1 11.4338 0.1042 2.9701 42 1 12.4343 -1.2920 3.4363 43 1 12.6554 -0.5312 1.8422 44 1 2.7182 -1.3541 -0.9977 45 1 2.1795 -1.9071 0.6476 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731868849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:22 Heat of formation + Delta-G solvation = 9.512666 kcal Electronic energy + Delta-G solvation = -22292.468724 eV Core-core repulsion = 19118.358588 eV Total energy + Delta-G solvation = -3174.110136 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.47483 -37.81680 -36.38342 -34.26600 -32.84315 -31.69456 -30.72255 -28.26521 -27.64947 -25.98661 -25.56634 -24.00089 -22.33563 -21.30617 -19.90249 -19.27940 -17.82765 -16.97775 -16.40686 -15.67213 -15.31810 -14.92145 -14.64768 -14.38644 -14.25943 -14.02863 -13.79804 -13.46073 -13.04405 -12.73019 -12.67614 -12.38804 -12.17536 -11.96300 -11.85711 -11.45877 -11.25966 -11.07031 -10.97732 -10.85968 -10.77577 -10.49131 -10.30163 -10.25153 -9.97890 -9.92737 -9.68358 -9.40859 -9.17176 -8.58976 -8.45862 -6.69335 -5.85721 -3.38174 2.08856 2.93834 3.33059 3.42608 3.46108 3.61947 4.24662 4.40367 4.45246 4.46827 4.85540 5.08468 5.24818 5.27281 5.47219 5.54960 5.57764 5.64336 5.68574 5.74263 5.80195 5.82418 5.83953 6.03494 6.08619 6.11450 6.14819 6.22676 6.28046 6.28380 6.50513 6.52453 6.63160 6.69259 6.79490 6.90333 7.02559 7.05682 7.24448 7.58051 7.77866 7.96233 8.43940 8.61362 9.12241 9.75781 10.31238 11.15815 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015645 B = 0.004390 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.311529 B = 6376.610593 C = 7548.082312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.143 4.143 3 C -0.082 4.082 4 C -0.106 4.106 5 C -0.125 4.125 6 C 0.523 3.477 7 O -0.548 6.548 8 N -0.716 5.716 9 C 0.097 3.903 10 C 0.136 3.864 11 N -0.581 5.581 12 C -0.256 4.256 13 H 0.064 0.936 14 C 0.009 3.991 15 N -0.889 5.889 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.290 1.290 19 H -0.288 1.288 20 C 0.147 3.853 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.089 4.089 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.397 0.603 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.026 0.974 35 H 0.106 0.894 36 H 0.254 0.746 37 H 0.043 0.957 38 H 0.033 0.967 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.044 0.956 42 H 0.042 0.958 43 H 0.047 0.953 44 H 0.097 0.903 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.934 7.237 5.088 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.143 4.143 3 C -0.119 4.119 4 C -0.109 4.109 5 C -0.183 4.183 6 C 0.308 3.692 7 O -0.426 6.426 8 N -0.366 5.366 9 C -0.028 4.028 10 C 0.008 3.992 11 N -0.301 5.301 12 C -0.385 4.385 13 H 0.082 0.918 14 C -0.191 4.191 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.200 1.200 18 H -0.217 1.217 19 H -0.215 1.215 20 C 0.021 3.979 21 C -0.179 4.179 22 C -0.206 4.206 23 C -0.126 4.126 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.094 0.906 27 H 0.124 0.876 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.231 0.769 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.123 0.877 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.115 0.885 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.696 7.632 4.471 13.880 hybrid contribution -0.138 -0.916 -0.416 1.016 sum -10.834 6.716 4.055 13.376 Atomic orbital electron populations 1.22825 0.93351 1.02007 1.03293 1.22849 0.93830 0.98278 0.99312 1.22238 0.92021 0.95400 1.02223 1.21963 0.91972 0.99890 0.97124 1.21567 1.02688 1.02755 0.91277 1.20196 0.86231 0.80651 0.82125 1.90661 1.80130 1.39912 1.31908 1.46109 1.12092 1.36761 1.41613 1.22351 0.79481 1.00961 1.00019 1.21075 0.85744 0.99027 0.93350 1.43713 1.03432 1.42715 1.40200 1.19161 1.23917 0.93661 1.01808 0.91784 1.25067 1.01493 0.95664 0.96832 1.69981 1.41403 1.15334 1.26462 0.86337 0.77534 0.79384 0.84231 1.20037 1.21658 1.21461 1.20969 0.91581 0.91857 0.93522 1.22071 0.97495 0.99213 0.99167 1.21760 0.99299 0.99534 0.99966 1.22293 0.92925 0.95807 1.01612 0.87732 0.87738 0.90556 0.87606 0.91701 0.91457 0.91592 0.76906 0.93350 0.91845 0.95575 0.87666 0.93623 0.93833 0.94836 0.93123 0.91879 0.93677 0.93879 0.93380 0.88492 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 14.71 29.02 0.43 -1.20 16 2 C -0.14 -1.54 6.60 -100.29 -0.66 -2.20 16 3 C -0.08 -0.98 6.98 -27.01 -0.19 -1.17 16 4 C -0.11 -1.33 1.27 -154.88 -0.20 -1.53 16 5 C -0.13 -1.27 8.98 37.15 0.33 -0.94 16 6 C 0.52 8.77 6.93 -10.98 -0.08 8.69 16 7 O -0.55 -11.31 15.90 5.56 0.09 -11.22 16 8 N -0.72 -12.01 5.44 -60.29 -0.33 -12.34 16 9 C 0.10 1.97 6.00 -4.04 -0.02 1.95 16 10 C 0.14 3.00 5.37 -4.04 -0.02 2.97 16 11 N -0.58 -13.96 2.45 -173.24 -0.43 -14.39 16 12 C -0.26 -6.81 9.49 -15.06 -0.14 -6.95 16 13 H 0.06 1.72 7.92 -52.48 -0.42 1.30 16 14 C 0.01 0.24 4.93 -17.43 -0.09 0.16 16 15 N -0.89 -24.42 11.32 55.49 0.63 -23.79 16 16 Si 0.90 21.28 29.61 -169.99 -5.03 16.25 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 20 C 0.15 3.05 5.69 -4.04 -0.02 3.02 16 21 C -0.14 -2.70 6.26 -26.73 -0.17 -2.86 16 22 C -0.15 -2.26 9.91 37.16 0.37 -1.89 16 23 C -0.09 -1.03 7.18 -27.02 -0.19 -1.23 16 24 H 0.10 0.83 8.06 -52.49 -0.42 0.40 16 25 H 0.10 0.84 8.06 -52.49 -0.42 0.41 16 26 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 27 H 0.11 1.45 7.42 -51.93 -0.39 1.07 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.60 7.70 -51.93 -0.40 0.20 16 30 H 0.07 0.63 7.04 -51.93 -0.37 0.27 16 31 H 0.40 5.74 7.37 -40.82 -0.30 5.44 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.46 8.14 -51.92 -0.42 1.04 16 34 H 0.03 0.55 8.10 -51.93 -0.42 0.12 16 35 H 0.11 2.61 5.31 -51.93 -0.28 2.34 16 36 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.04 0.90 8.04 -51.93 -0.42 0.48 16 38 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 45 H 0.08 0.84 8.10 -51.93 -0.42 0.41 16 LS Contribution 367.17 15.07 5.53 5.53 Total: -1.00 -29.70 367.17 -8.21 -37.92 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -8.02 Total: 5.23 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -0.65 Total: -3.19 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.13 Total: -50.52 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.70 -8.21 -37.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731868849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.432 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds