Wall clock time and date at job start Tue Mar 31 2020 02:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.51582 * 135.78450 * 2 1 4 4 C 1.53836 * 86.75695 * 154.84368 * 3 2 1 5 5 C 1.52995 * 113.66014 * 270.21584 * 4 3 2 6 6 C 1.50710 * 113.65873 * 139.26924 * 4 3 2 7 7 O 1.21279 * 119.99712 * 359.97438 * 6 4 3 8 8 N 1.34774 * 120.00299 * 179.97438 * 6 4 3 9 9 C 1.46494 * 120.00311 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.47305 * 180.02562 * 9 8 6 11 11 N 1.46501 * 109.47119 * 179.97438 * 10 9 8 12 12 C 1.36934 * 119.99655 * 265.79237 * 11 10 9 13 13 H 1.08005 * 119.99954 * 146.22217 * 12 11 10 14 14 C 1.38810 * 120.00444 * 326.21570 * 12 11 10 15 15 N 1.31625 * 119.99807 * 337.68312 * 14 12 11 16 16 Si 1.86793 * 120.00329 * 157.68485 * 14 12 11 17 17 H 1.48509 * 109.47105 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47456 * 120.00082 * 16 14 12 19 19 H 1.48504 * 109.47289 * 239.99956 * 16 14 12 20 20 C 1.46496 * 119.99874 * 85.78991 * 11 10 9 21 21 C 1.53001 * 109.46901 * 90.00324 * 20 11 10 22 22 C 1.53002 * 109.46890 * 180.02562 * 21 20 11 23 23 C 1.51579 * 135.78144 * 179.97438 * 2 1 3 24 24 H 1.08001 * 119.99910 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.00144 * 180.02562 * 1 2 3 26 26 H 1.08997 * 113.67041 * 40.37307 * 3 2 1 27 27 H 1.09005 * 113.74957 * 269.32137 * 3 2 1 28 28 H 1.09000 * 109.47157 * 298.34018 * 5 4 3 29 29 H 1.09005 * 109.46753 * 58.33620 * 5 4 3 30 30 H 1.09003 * 109.47445 * 178.33368 * 5 4 3 31 31 H 0.97005 * 119.99626 * 359.97438 * 8 6 4 32 32 H 1.08990 * 109.47527 * 59.99223 * 9 8 6 33 33 H 1.09009 * 109.47030 * 299.99553 * 9 8 6 34 34 H 1.09000 * 109.46730 * 299.99518 * 10 9 8 35 35 H 1.08998 * 109.47025 * 59.99602 * 10 9 8 36 36 H 0.96992 * 119.99916 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.46946 * 210.00099 * 20 11 10 38 38 H 1.09002 * 109.47385 * 330.00034 * 20 11 10 39 39 H 1.09000 * 109.47137 * 299.99658 * 21 20 11 40 40 H 1.09002 * 109.47337 * 59.99681 * 21 20 11 41 41 H 1.09002 * 109.47396 * 59.99710 * 22 21 20 42 42 H 1.09004 * 109.46875 * 179.97438 * 22 21 20 43 43 H 1.08999 * 109.46816 * 299.99231 * 22 21 20 44 44 H 1.09003 * 113.66458 * 90.68896 * 23 2 1 45 45 H 1.09004 * 113.66728 * 319.62365 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0571 0.0000 4 6 3.3035 0.0000 0.6529 5 6 3.2462 0.0015 2.1818 6 6 4.7130 -0.0001 0.1194 7 8 5.0342 0.7875 -0.7451 8 7 5.6166 -0.8754 0.6030 9 6 6.9868 -0.8751 0.0849 10 6 7.8014 -1.9573 0.7963 11 7 9.1715 -1.9574 0.2777 12 6 9.5180 -2.8047 -0.7407 13 1 10.2491 -2.4973 -1.4738 14 6 8.9297 -4.0587 -0.8309 15 7 8.4003 -4.6157 0.2379 16 14 8.8892 -4.9559 -2.4687 17 1 9.5457 -4.1211 -3.5068 18 1 9.6101 -6.2482 -2.3432 19 1 7.4792 -5.2115 -2.8585 20 6 10.1708 -1.0510 0.8486 21 6 10.8836 -1.7448 2.0111 22 6 11.9268 -0.7979 2.6078 23 6 2.3963 -1.0571 0.0005 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 2.1797 1.9073 0.6466 27 1 2.7193 1.3547 -0.9977 28 1 3.5890 0.9657 2.5572 29 1 2.2202 -0.1710 2.5070 30 1 3.8883 -0.7889 2.5703 31 1 5.3597 -1.5051 1.2948 32 1 7.4424 0.0990 0.2627 33 1 6.9704 -1.0783 -0.9860 34 1 7.8179 -1.7545 1.8672 35 1 7.3457 -2.9312 0.6179 36 1 7.9889 -5.4917 0.1748 37 1 10.8993 -0.7846 0.0827 38 1 9.6782 -0.1487 1.2108 39 1 10.1551 -2.0111 2.7770 40 1 11.3762 -2.6471 1.6488 41 1 11.4338 0.1042 2.9701 42 1 12.4343 -1.2920 3.4363 43 1 12.6554 -0.5312 1.8422 44 1 2.7182 -1.3541 -0.9977 45 1 2.1795 -1.9071 0.6476 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731868849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:21 Heat of formation + Delta-G solvation = -6.983016 kcal Electronic energy + Delta-G solvation = -22293.184030 eV Core-core repulsion = 19118.358588 eV Total energy + Delta-G solvation = -3174.825443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.62732 -39.08462 -38.11964 -35.81096 -34.57402 -32.88346 -32.26111 -29.79364 -28.55213 -27.34062 -26.91598 -25.53201 -23.79014 -22.91582 -21.56918 -20.63208 -18.75161 -18.63292 -17.77781 -17.12235 -16.95619 -16.44405 -15.96335 -15.78119 -15.56141 -15.35157 -15.22395 -14.67104 -14.49602 -14.19163 -14.15368 -13.64752 -13.40531 -13.15649 -13.07061 -12.85768 -12.77830 -12.56530 -12.52077 -12.37209 -12.15674 -12.04973 -11.83641 -11.80920 -11.72972 -11.33300 -11.16052 -10.74054 -10.56511 -10.06329 -10.00134 -8.65361 -7.88141 -5.43509 1.30409 1.41775 1.46832 1.55655 1.60204 2.23137 2.50988 3.21516 3.33932 3.46255 3.57198 3.72965 3.94275 3.99246 4.25828 4.35163 4.37133 4.43946 4.54828 4.65643 4.67166 4.75594 4.77111 4.79001 4.82042 4.89733 4.94972 4.95870 5.00285 5.15656 5.19168 5.22921 5.27174 5.28318 5.41799 5.45736 5.56433 5.60476 5.66075 5.79104 5.99957 6.42595 6.60234 7.12452 7.25645 7.82163 8.32271 9.10322 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015645 B = 0.004390 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.311529 B = 6376.610593 C = 7548.082312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.158 4.158 3 C -0.084 4.084 4 C -0.102 4.102 5 C -0.121 4.121 6 C 0.519 3.481 7 O -0.592 6.592 8 N -0.709 5.709 9 C 0.118 3.882 10 C 0.145 3.855 11 N -0.598 5.598 12 C -0.268 4.268 13 H 0.055 0.945 14 C -0.030 4.030 15 N -0.910 5.910 16 Si 0.949 3.051 17 H -0.274 1.274 18 H -0.288 1.288 19 H -0.290 1.290 20 C 0.143 3.857 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.089 4.089 24 H 0.120 0.880 25 H 0.120 0.880 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.410 0.590 32 H 0.044 0.956 33 H 0.029 0.971 34 H 0.038 0.962 35 H 0.082 0.918 36 H 0.253 0.747 37 H 0.041 0.959 38 H 0.051 0.949 39 H 0.040 0.960 40 H 0.032 0.968 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.355 7.706 6.348 15.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C -0.122 4.122 4 C -0.105 4.105 5 C -0.178 4.178 6 C 0.307 3.693 7 O -0.472 6.472 8 N -0.360 5.360 9 C -0.008 4.008 10 C 0.018 3.982 11 N -0.318 5.318 12 C -0.398 4.398 13 H 0.073 0.927 14 C -0.228 4.228 15 N -0.554 5.554 16 Si 0.778 3.222 17 H -0.199 1.199 18 H -0.215 1.215 19 H -0.216 1.216 20 C 0.018 3.982 21 C -0.170 4.170 22 C -0.196 4.196 23 C -0.126 4.126 24 H 0.138 0.862 25 H 0.139 0.861 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.247 0.753 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.124 8.101 5.759 15.677 hybrid contribution 0.264 -1.014 -0.823 1.333 sum -11.859 7.087 4.935 14.671 Atomic orbital electron populations 1.23149 0.92639 1.03524 0.99762 1.22647 0.94089 0.96717 1.02379 1.22175 0.92660 0.96217 1.01103 1.22058 0.88630 1.00961 0.98854 1.21588 1.04188 1.03162 0.88901 1.21045 0.87711 0.79364 0.81192 1.90636 1.81194 1.41572 1.33840 1.45976 1.10859 1.37283 1.41845 1.21842 0.81283 0.99914 0.97794 1.20911 0.85138 0.98159 0.93999 1.43935 1.04821 1.42808 1.40265 1.19305 1.23787 0.94211 1.02527 0.92743 1.25614 1.01680 0.96324 0.99167 1.70070 1.42153 1.15542 1.27642 0.85506 0.77160 0.78311 0.81271 1.19853 1.21456 1.21635 1.21096 0.91205 0.91966 0.93930 1.21902 0.97993 0.98778 0.98279 1.21668 0.98307 0.99162 1.00447 1.22250 0.93059 0.96473 1.00807 0.86168 0.86149 0.89227 0.90167 0.91501 0.89397 0.91024 0.75322 0.93754 0.95214 0.94319 0.90044 0.93753 0.94034 0.93086 0.94142 0.94946 0.91983 0.92399 0.92616 0.90508 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 14.71 67.78 1.00 -1.30 16 2 C -0.16 -3.09 6.60 -15.98 -0.11 -3.20 16 3 C -0.08 -1.96 6.98 30.41 0.21 -1.75 16 4 C -0.10 -2.46 1.27 -52.42 -0.07 -2.53 16 5 C -0.12 -2.17 8.98 71.98 0.65 -1.53 16 6 C 0.52 17.60 6.93 87.66 0.61 18.21 16 7 O -0.59 -25.22 15.90 -3.03 -0.05 -25.27 16 8 N -0.71 -23.91 5.44 -463.07 -2.52 -26.43 16 9 C 0.12 4.91 6.00 86.38 0.52 5.43 16 10 C 0.15 6.50 5.37 86.38 0.46 6.96 16 11 N -0.60 -29.18 2.45 -702.01 -1.72 -30.90 16 12 C -0.27 -14.56 9.49 84.03 0.80 -13.76 16 13 H 0.05 3.00 7.92 -2.91 -0.02 2.98 16 14 C -0.03 -1.64 4.93 84.86 0.42 -1.22 16 15 N -0.91 -50.70 11.32 21.65 0.25 -50.46 16 16 Si 0.95 44.37 29.61 68.60 2.03 46.40 16 17 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 19 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 20 C 0.14 5.92 5.69 86.38 0.49 6.41 16 21 C -0.13 -4.95 6.26 30.60 0.19 -4.76 16 22 C -0.14 -3.93 9.91 71.98 0.71 -3.22 16 23 C -0.09 -1.95 7.18 30.40 0.22 -1.73 16 24 H 0.12 1.45 8.06 -2.91 -0.02 1.42 16 25 H 0.12 1.45 8.06 -2.91 -0.02 1.43 16 26 H 0.09 1.79 8.10 -2.39 -0.02 1.77 16 27 H 0.08 2.27 7.42 -2.38 -0.02 2.25 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.26 7.70 -2.38 -0.02 1.24 16 30 H 0.07 1.20 7.04 -2.39 -0.02 1.18 16 31 H 0.41 11.63 7.37 -92.70 -0.68 10.95 16 32 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16 35 H 0.08 4.12 5.31 -2.39 -0.01 4.11 16 36 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 37 H 0.04 1.71 8.04 -2.39 -0.02 1.69 16 38 H 0.05 1.91 8.07 -2.39 -0.02 1.89 16 39 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 44 H 0.08 1.98 8.09 -2.39 -0.02 1.96 16 45 H 0.10 1.81 8.10 -2.38 -0.02 1.79 16 Total: -1.00 -65.37 367.17 4.35 -61.02 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.26 Total: 23.66 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 6.10 Total: 1.99 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -4.00 Total: -107.79 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.05 Total: -25.27 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -65.37 4.35 -61.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731868849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.032 kcal (2) G-P(sol) polarization free energy of solvation -65.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds