Wall clock time and date at job start Tue Mar 31 2020 01:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99773 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00149 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47015 * 180.02562 * 9 7 6 11 11 C 1.29442 * 117.96416 * 94.73824 * 10 9 7 12 12 C 1.50069 * 124.07674 * 180.23488 * 11 10 9 13 13 C 1.53018 * 110.20232 * 343.31586 * 12 11 10 14 14 C 1.53400 * 108.43706 * 49.24718 * 13 12 11 15 15 C 1.50065 * 117.96274 * 274.99541 * 10 9 7 16 16 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 17 17 C 1.36941 * 119.99583 * 85.00384 * 16 3 2 18 18 H 1.07999 * 120.00378 * 359.97438 * 17 16 3 19 19 C 1.38814 * 119.99657 * 179.97438 * 17 16 3 20 20 N 1.31621 * 119.99842 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00324 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47092 * 89.99724 * 21 19 17 23 23 H 1.48498 * 109.47035 * 210.00114 * 21 19 17 24 24 H 1.48502 * 109.46772 * 329.99889 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 31 31 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 32 32 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 33 33 H 1.09001 * 109.47087 * 300.00282 * 9 7 6 34 34 H 1.08996 * 109.47501 * 59.99922 * 9 7 6 35 35 H 1.08002 * 117.96425 * 0.46432 * 11 10 9 36 36 H 1.08995 * 109.48227 * 222.99310 * 12 11 10 37 37 H 1.09006 * 109.17500 * 103.44614 * 12 11 10 38 38 H 1.09006 * 109.64293 * 289.56588 * 13 12 11 39 39 H 1.08996 * 109.82045 * 169.03424 * 13 12 11 40 40 H 1.08999 * 109.63999 * 172.88354 * 14 13 12 41 41 H 1.08993 * 109.64124 * 52.25266 * 14 13 12 42 42 H 1.09000 * 109.36505 * 283.05908 * 15 10 9 43 43 H 1.09004 * 109.35787 * 42.77894 * 15 10 9 44 44 H 0.96999 * 120.00274 * 264.99733 * 16 3 2 45 45 H 0.97001 * 120.00318 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1634 2.1485 0.2583 9 6 5.8981 4.4750 -0.0359 10 6 7.4000 4.4767 0.0878 11 6 8.0988 4.4394 -1.0011 12 6 9.5990 4.4308 -1.0376 13 6 10.1630 4.8823 0.3112 14 6 9.4612 4.0887 1.4207 15 6 7.9924 4.5157 1.4660 16 7 1.6525 2.0974 -1.2519 17 6 0.4156 2.6734 -1.3689 18 1 -0.2743 2.6446 -0.5385 19 6 0.0486 3.2944 -2.5549 20 7 -1.1400 3.8484 -2.6672 21 14 1.2421 3.3449 -3.9910 22 1 1.0398 2.1472 -4.8452 23 1 1.0002 4.5713 -4.7927 24 1 2.6352 3.3565 -3.4767 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8499 1.0378 1.0961 31 1 3.9954 0.8311 -0.6659 32 1 3.4409 3.5484 -0.1309 33 1 5.6133 4.8818 -1.0062 34 1 5.4672 5.0880 0.7556 35 1 7.5693 4.4167 -1.9422 36 1 9.9475 5.1058 -1.8192 37 1 9.9461 3.4205 -1.2545 38 1 9.9763 5.9474 0.4484 39 1 11.2354 4.6908 0.3462 40 1 9.9345 4.3019 2.3791 41 1 9.5263 3.0222 1.2056 42 1 7.9228 5.5293 1.8608 43 1 7.4407 3.8363 2.1158 44 1 2.2720 2.1231 -1.9978 45 1 -1.3964 4.2827 -3.4959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732196211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:23 Heat of formation + Delta-G solvation = -39.070549 kcal Electronic energy + Delta-G solvation = -22207.385312 eV Core-core repulsion = 19031.168450 eV Total energy + Delta-G solvation = -3176.216863 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.79993 -38.29484 -36.80641 -33.74189 -32.92903 -32.33889 -30.82508 -30.29747 -28.72776 -26.86221 -23.62099 -23.26598 -22.47775 -21.69862 -20.30879 -19.84314 -17.78421 -17.61836 -16.61855 -16.11644 -15.58426 -15.22024 -14.90091 -14.42853 -14.13855 -13.92661 -13.57648 -13.48083 -13.22328 -12.85991 -12.83225 -12.66655 -12.46688 -12.29437 -12.18687 -11.70057 -11.52732 -11.15416 -11.01421 -10.90880 -10.72725 -10.55982 -10.42714 -10.33368 -10.29443 -10.02575 -9.67833 -9.51954 -9.01547 -8.76184 -8.71430 -7.37345 -5.84553 -3.20544 2.18688 2.89738 3.30618 3.35388 3.40704 3.61483 4.51786 4.52228 4.60852 4.80070 5.03649 5.10941 5.16875 5.21260 5.28817 5.32469 5.38779 5.42296 5.49118 5.51535 5.63176 5.71068 5.77449 5.82131 5.85286 5.87660 5.90077 5.96870 6.05328 6.09391 6.22322 6.26768 6.46813 6.52356 6.57616 6.61458 6.81424 6.93049 6.99239 7.27278 7.85619 7.91485 8.33782 8.51325 9.11851 9.84282 10.03898 11.33115 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019949 B = 0.004027 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.210001 B = 6951.204822 C = 7871.310527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.062 0.938 5 C 0.112 3.888 6 N -0.719 5.719 7 C 0.511 3.489 8 O -0.546 6.546 9 C -0.113 4.113 10 C -0.095 4.095 11 C -0.152 4.152 12 C -0.086 4.086 13 C -0.120 4.120 14 C -0.118 4.118 15 C -0.079 4.079 16 N -0.747 5.747 17 C -0.242 4.242 18 H 0.095 0.905 19 C 0.007 3.993 20 N -0.931 5.931 21 Si 0.880 3.120 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.278 1.278 25 H 0.032 0.968 26 H 0.088 0.912 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.409 0.591 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.362 0.638 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.935 1.287 7.112 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.080 0.920 5 C -0.012 4.012 6 N -0.371 5.371 7 C 0.297 3.703 8 O -0.424 6.424 9 C -0.153 4.153 10 C -0.096 4.096 11 C -0.170 4.170 12 C -0.123 4.123 13 C -0.157 4.157 14 C -0.156 4.156 15 C -0.116 4.116 16 N -0.390 5.390 17 C -0.372 4.372 18 H 0.113 0.887 19 C -0.189 4.189 20 N -0.578 5.578 21 Si 0.711 3.289 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.204 1.204 25 H 0.051 0.949 26 H 0.106 0.894 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.246 0.754 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 18.224 0.726 7.275 19.636 hybrid contribution 0.217 0.336 -1.366 1.423 sum 18.441 1.062 5.909 19.393 Atomic orbital electron populations 1.21783 0.95210 0.99713 1.03768 1.22037 0.97340 0.97885 1.00089 1.20546 0.89930 0.92939 0.90712 0.92001 1.21691 0.95423 0.82840 1.01262 1.46062 1.07284 1.10691 1.73080 1.20535 0.82291 0.90961 0.76504 1.90667 1.56010 1.46453 1.49295 1.20873 0.94562 0.95127 1.04763 1.20271 0.93102 1.00889 0.95314 1.21852 0.95704 1.01860 0.97622 1.20382 0.92868 1.01524 0.97530 1.21599 0.99239 1.00006 0.94875 1.21573 0.95056 1.00576 0.98358 1.20333 0.95743 1.01218 0.94265 1.42832 1.16794 1.67680 1.11736 1.19061 0.90595 1.27656 0.99872 0.88749 1.24656 0.96369 1.00334 0.97516 1.69690 1.19319 1.42064 1.26756 0.86627 0.81072 0.77346 0.83873 1.21174 1.21846 1.20418 0.94856 0.89359 0.93882 0.93567 0.92694 0.91602 0.92068 0.75450 0.88456 0.88403 0.88146 0.91365 0.91031 0.91895 0.91962 0.91939 0.91496 0.91240 0.90922 0.80531 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.18 37.16 0.34 -2.30 16 2 C -0.13 -2.21 5.61 -26.73 -0.15 -2.36 16 3 C 0.17 2.97 2.59 -67.93 -0.18 2.79 16 4 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 5 C 0.11 1.81 5.23 -4.04 -0.02 1.79 16 6 N -0.72 -11.23 5.39 -60.29 -0.32 -11.55 16 7 C 0.51 7.97 7.82 -10.98 -0.09 7.88 16 8 O -0.55 -10.16 16.03 5.56 0.09 -10.07 16 9 C -0.11 -1.40 5.71 -29.04 -0.17 -1.56 16 10 C -0.10 -1.17 4.33 -100.94 -0.44 -1.60 16 11 C -0.15 -1.82 9.37 -35.90 -0.34 -2.16 16 12 C -0.09 -0.85 6.11 -28.18 -0.17 -1.03 16 13 C -0.12 -1.06 6.01 -26.51 -0.16 -1.22 16 14 C -0.12 -1.16 6.01 -26.51 -0.16 -1.32 16 15 C -0.08 -0.85 5.80 -28.18 -0.16 -1.02 16 16 N -0.75 -15.92 4.31 -53.42 -0.23 -16.15 16 17 C -0.24 -6.18 8.24 -15.06 -0.12 -6.30 16 18 H 0.09 2.59 7.55 -52.49 -0.40 2.20 16 19 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 20 N -0.93 -27.79 13.97 55.49 0.78 -27.02 16 21 Si 0.88 21.17 27.74 -169.99 -4.71 16.46 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.09 1.90 5.99 -51.93 -0.31 1.59 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.41 6.34 8.14 -40.82 -0.33 6.00 16 33 H 0.10 1.13 7.80 -51.93 -0.40 0.72 16 34 H 0.10 1.01 8.11 -51.93 -0.42 0.59 16 35 H 0.10 1.21 7.74 -52.49 -0.41 0.81 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.36 7.87 5.66 -40.82 -0.23 7.64 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 357.02 15.07 5.38 5.38 Total: -1.00 -30.14 357.02 -8.94 -39.08 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -8.01 Total: 12.18 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -1.91 Total: -8.30 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.22 Total: -54.72 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.71 Total: 16.46 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.14 -8.94 -39.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732196211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.013 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds