Wall clock time and date at job start Tue Mar 31 2020 01:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99773 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00149 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47015 * 180.02562 * 9 7 6 11 11 C 1.29442 * 117.96416 * 94.73824 * 10 9 7 12 12 C 1.50069 * 124.07674 * 180.23488 * 11 10 9 13 13 C 1.53018 * 110.20232 * 343.31586 * 12 11 10 14 14 C 1.53400 * 108.43706 * 49.24718 * 13 12 11 15 15 C 1.50065 * 117.96274 * 274.99541 * 10 9 7 16 16 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 17 17 C 1.36941 * 119.99583 * 85.00384 * 16 3 2 18 18 H 1.07999 * 120.00378 * 359.97438 * 17 16 3 19 19 C 1.38814 * 119.99657 * 179.97438 * 17 16 3 20 20 N 1.31621 * 119.99842 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00324 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47092 * 89.99724 * 21 19 17 23 23 H 1.48498 * 109.47035 * 210.00114 * 21 19 17 24 24 H 1.48502 * 109.46772 * 329.99889 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 31 31 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 32 32 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 33 33 H 1.09001 * 109.47087 * 300.00282 * 9 7 6 34 34 H 1.08996 * 109.47501 * 59.99922 * 9 7 6 35 35 H 1.08002 * 117.96425 * 0.46432 * 11 10 9 36 36 H 1.08995 * 109.48227 * 222.99310 * 12 11 10 37 37 H 1.09006 * 109.17500 * 103.44614 * 12 11 10 38 38 H 1.09006 * 109.64293 * 289.56588 * 13 12 11 39 39 H 1.08996 * 109.82045 * 169.03424 * 13 12 11 40 40 H 1.08999 * 109.63999 * 172.88354 * 14 13 12 41 41 H 1.08993 * 109.64124 * 52.25266 * 14 13 12 42 42 H 1.09000 * 109.36505 * 283.05908 * 15 10 9 43 43 H 1.09004 * 109.35787 * 42.77894 * 15 10 9 44 44 H 0.96999 * 120.00274 * 264.99733 * 16 3 2 45 45 H 0.97001 * 120.00318 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1634 2.1485 0.2583 9 6 5.8981 4.4750 -0.0359 10 6 7.4000 4.4767 0.0878 11 6 8.0988 4.4394 -1.0011 12 6 9.5990 4.4308 -1.0376 13 6 10.1630 4.8823 0.3112 14 6 9.4612 4.0887 1.4207 15 6 7.9924 4.5157 1.4660 16 7 1.6525 2.0974 -1.2519 17 6 0.4156 2.6734 -1.3689 18 1 -0.2743 2.6446 -0.5385 19 6 0.0486 3.2944 -2.5549 20 7 -1.1400 3.8484 -2.6672 21 14 1.2421 3.3449 -3.9910 22 1 1.0398 2.1472 -4.8452 23 1 1.0002 4.5713 -4.7927 24 1 2.6352 3.3565 -3.4767 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8499 1.0378 1.0961 31 1 3.9954 0.8311 -0.6659 32 1 3.4409 3.5484 -0.1309 33 1 5.6133 4.8818 -1.0062 34 1 5.4672 5.0880 0.7556 35 1 7.5693 4.4167 -1.9422 36 1 9.9475 5.1058 -1.8192 37 1 9.9461 3.4205 -1.2545 38 1 9.9763 5.9474 0.4484 39 1 11.2354 4.6908 0.3462 40 1 9.9345 4.3019 2.3791 41 1 9.5263 3.0222 1.2056 42 1 7.9228 5.5293 1.8608 43 1 7.4407 3.8363 2.1158 44 1 2.2720 2.1231 -1.9978 45 1 -1.3964 4.2827 -3.4959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732196211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:22 Heat of formation + Delta-G solvation = -57.228974 kcal Electronic energy + Delta-G solvation = -22208.172721 eV Core-core repulsion = 19031.168450 eV Total energy + Delta-G solvation = -3177.004271 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.96546 -39.27428 -38.28918 -35.22894 -34.19630 -33.75737 -32.08788 -31.62467 -30.05065 -28.00213 -25.26142 -24.21770 -23.89042 -22.59174 -21.76692 -21.15347 -19.62849 -18.47997 -17.91189 -17.24651 -17.07449 -16.34594 -16.17205 -15.88563 -15.34984 -14.97369 -14.73168 -14.67396 -14.61036 -14.46865 -14.28137 -13.95606 -13.49132 -13.12587 -13.09822 -13.00420 -12.91449 -12.88427 -12.55734 -12.31636 -12.12318 -11.90119 -11.65003 -11.60063 -11.42604 -11.33136 -11.11204 -11.02644 -10.85195 -10.02254 -9.66412 -9.29840 -7.95827 -5.27992 1.25975 1.38608 1.41509 1.47719 1.68303 2.42093 2.51363 3.36185 3.57781 3.65920 3.79938 3.88629 4.02803 4.08383 4.27163 4.30751 4.36512 4.44164 4.46817 4.53113 4.56727 4.69270 4.72209 4.75467 4.76860 4.81523 5.00242 5.04291 5.06482 5.09466 5.11704 5.18656 5.19693 5.32284 5.46047 5.47794 5.55273 5.71556 5.74572 5.86908 6.10857 6.26842 6.61160 7.12647 7.28143 7.87308 8.06094 9.25244 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019949 B = 0.004027 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.210001 B = 6951.204822 C = 7871.310527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.169 3.831 4 H 0.060 0.940 5 C 0.121 3.879 6 N -0.720 5.720 7 C 0.511 3.489 8 O -0.578 6.578 9 C -0.111 4.111 10 C -0.109 4.109 11 C -0.161 4.161 12 C -0.088 4.088 13 C -0.116 4.116 14 C -0.118 4.118 15 C -0.079 4.079 16 N -0.746 5.746 17 C -0.205 4.205 18 H 0.069 0.931 19 C -0.059 4.059 20 N -0.983 5.983 21 Si 0.941 3.059 22 H -0.291 1.291 23 H -0.302 1.302 24 H -0.253 1.253 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.411 0.589 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.087 0.913 43 H 0.058 0.942 44 H 0.363 0.637 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.247 1.207 7.829 21.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.061 3.939 4 H 0.078 0.922 5 C -0.004 4.004 6 N -0.371 5.371 7 C 0.298 3.702 8 O -0.458 6.458 9 C -0.150 4.150 10 C -0.109 4.109 11 C -0.179 4.179 12 C -0.125 4.125 13 C -0.153 4.153 14 C -0.156 4.156 15 C -0.116 4.116 16 N -0.390 5.390 17 C -0.336 4.336 18 H 0.087 0.913 19 C -0.251 4.251 20 N -0.634 5.634 21 Si 0.771 3.229 22 H -0.218 1.218 23 H -0.229 1.229 24 H -0.178 1.178 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.247 0.753 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.196 0.804 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 20.580 0.621 8.026 22.098 hybrid contribution -0.524 0.278 -1.476 1.590 sum 20.057 0.899 6.550 21.118 Atomic orbital electron populations 1.21694 0.96305 1.00452 1.01627 1.21969 0.96174 0.97095 1.01648 1.20684 0.91191 0.93269 0.88747 0.92208 1.21564 0.93721 0.83271 1.01804 1.46095 1.07538 1.10500 1.72997 1.21064 0.81779 0.91951 0.75379 1.90653 1.56650 1.47755 1.50787 1.20924 0.94901 0.93182 1.06006 1.20455 0.93066 1.01308 0.96089 1.22075 0.96977 1.01470 0.97366 1.20441 0.91603 1.01677 0.98810 1.21595 0.99937 1.00148 0.93649 1.21578 0.94766 0.99549 0.99687 1.20363 0.96102 1.01868 0.93275 1.42814 1.15257 1.67672 1.13217 1.18968 0.91188 1.25109 0.98373 0.91311 1.25287 0.97912 1.01530 1.00322 1.69851 1.21676 1.44618 1.27271 0.85619 0.80348 0.76349 0.80612 1.21778 1.22914 1.17801 0.92775 0.93528 0.93847 0.90327 0.92757 0.90189 0.92664 0.75287 0.87639 0.86275 0.88738 0.89947 0.91534 0.91141 0.90443 0.90281 0.93384 0.89498 0.92376 0.80445 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 9.18 71.98 0.66 -4.30 16 2 C -0.13 -3.97 5.61 30.60 0.17 -3.80 16 3 C 0.17 5.65 2.59 44.99 0.12 5.77 16 4 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 5 C 0.12 3.63 5.23 86.38 0.45 4.08 16 6 N -0.72 -21.11 5.39 -463.06 -2.49 -23.61 16 7 C 0.51 15.10 7.82 87.66 0.69 15.78 16 8 O -0.58 -20.84 16.03 -3.03 -0.05 -20.89 16 9 C -0.11 -2.52 5.71 29.10 0.17 -2.35 16 10 C -0.11 -2.49 4.33 -15.10 -0.07 -2.55 16 11 C -0.16 -3.62 9.37 27.04 0.25 -3.37 16 12 C -0.09 -1.60 6.11 29.66 0.18 -1.42 16 13 C -0.12 -1.78 6.01 30.73 0.18 -1.60 16 14 C -0.12 -2.12 6.01 30.74 0.18 -1.93 16 15 C -0.08 -1.59 5.80 29.66 0.17 -1.41 16 16 N -0.75 -30.91 4.31 -322.93 -1.39 -32.30 16 17 C -0.21 -10.51 8.24 84.03 0.69 -9.82 16 18 H 0.07 3.86 7.55 -2.91 -0.02 3.84 16 19 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 20 N -0.98 -60.28 13.97 21.65 0.30 -59.98 16 21 Si 0.94 43.86 27.74 68.60 1.90 45.76 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 24 H -0.25 -10.59 6.52 99.48 0.65 -9.94 16 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.05 2.00 5.99 -2.39 -0.01 1.98 16 27 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 31 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.41 11.94 8.14 -92.71 -0.75 11.18 16 33 H 0.11 2.23 7.80 -2.39 -0.02 2.21 16 34 H 0.12 2.18 8.11 -2.39 -0.02 2.16 16 35 H 0.09 2.18 7.74 -2.91 -0.02 2.15 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.07 1.00 8.12 -2.38 -0.02 0.98 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.05 1.03 8.12 -2.39 -0.02 1.01 16 42 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.36 15.08 5.66 -92.71 -0.52 14.55 16 45 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -65.44 357.02 2.22 -63.23 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: -0.38 Total: 37.52 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 4.32 Total: -9.74 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -3.58 Total: -115.88 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.05 Total: -20.89 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.90 Total: 45.76 kcal Total: -65.44 2.22 -63.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732196211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.997 kcal (2) G-P(sol) polarization free energy of solvation -65.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds