Wall clock time and date at job start Tue Mar 31 2020 01:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.51269 * 120.85340 * 2 1 4 4 C 1.53227 * 108.53626 * 231.32334 * 3 2 1 5 5 C 1.52953 * 109.40747 * 305.37241 * 4 3 2 6 6 C 1.50703 * 109.41782 * 183.70382 * 5 4 3 7 7 O 1.21283 * 119.99488 * 359.85632 * 6 5 4 8 8 N 1.34777 * 120.00290 * 179.86072 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 H 1.09002 * 109.47682 * 64.99618 * 10 9 8 12 12 C 1.53003 * 109.47530 * 184.99929 * 10 9 8 13 13 C 1.52994 * 109.47306 * 184.99714 * 12 10 9 14 14 N 1.46506 * 109.47012 * 304.99483 * 10 9 8 15 15 C 1.36937 * 119.99934 * 154.99714 * 14 10 9 16 16 H 1.07998 * 120.00035 * 0.02562 * 15 14 10 17 17 C 1.38810 * 120.00229 * 180.02562 * 15 14 10 18 18 N 1.31626 * 119.99636 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00308 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47420 * 89.99861 * 19 17 15 21 21 H 1.48504 * 109.47183 * 210.00218 * 19 17 15 22 22 H 1.48504 * 109.46991 * 329.99840 * 19 17 15 23 23 C 1.52959 * 109.76131 * 63.63296 * 5 4 3 24 24 C 1.51272 * 120.84821 * 179.97438 * 2 1 3 25 25 H 1.08005 * 119.99835 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00418 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.62613 * 111.61206 * 3 2 1 28 28 H 1.08996 * 109.62841 * 351.03908 * 3 2 1 29 29 H 1.09009 * 109.48375 * 185.39016 * 4 3 2 30 30 H 1.08998 * 109.48279 * 65.35279 * 4 3 2 31 31 H 1.08999 * 109.41492 * 303.56284 * 5 4 3 32 32 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 33 33 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 34 34 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 35 35 H 1.09001 * 109.46709 * 305.00182 * 12 10 9 36 36 H 1.09003 * 109.46765 * 64.99671 * 12 10 9 37 37 H 1.09001 * 109.46772 * 179.97438 * 13 12 10 38 38 H 1.08994 * 109.47382 * 299.99589 * 13 12 10 39 39 H 1.09003 * 109.47243 * 60.00250 * 13 12 10 40 40 H 0.97000 * 120.00390 * 335.00529 * 14 10 9 41 41 H 0.97001 * 119.99765 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.48195 * 56.34779 * 23 5 4 43 43 H 1.09000 * 109.48499 * 176.38929 * 23 5 4 44 44 H 1.08997 * 109.62907 * 248.39149 * 24 2 1 45 45 H 1.09000 * 109.62570 * 8.77563 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1149 1.2512 -1.1342 5 6 3.9810 -0.0003 -0.9825 6 6 5.0511 -0.0007 -2.0437 7 8 5.1123 0.9091 -2.8434 8 7 5.9400 -1.0119 -2.1040 9 6 6.9840 -1.0091 -3.1318 10 6 7.8567 -2.2560 -2.9757 11 1 7.2587 -3.1454 -3.1745 12 6 9.0202 -2.1917 -3.9672 13 6 9.8213 -3.4933 -3.8987 14 7 8.3823 -2.3162 -1.6095 15 6 8.7401 -3.5211 -1.0661 16 1 8.6352 -4.4270 -1.6447 17 6 9.2376 -3.5783 0.2286 18 7 9.3659 -2.4743 0.9336 19 14 9.7263 -5.2219 0.9696 20 1 11.1561 -5.4928 0.6737 21 1 9.5242 -5.1814 2.4403 22 1 8.8870 -6.2980 0.3841 23 6 3.1137 -1.2510 -1.1348 24 6 2.0856 -1.2987 0.0006 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9352 0.0004 27 1 2.5981 1.4190 0.9545 28 1 1.4029 2.1330 -0.1599 29 1 3.7468 2.1383 -1.0890 30 1 2.5979 1.2214 -2.0933 31 1 4.4477 -0.0008 0.0025 32 1 5.8912 -1.7394 -1.4642 33 1 6.5218 -1.0104 -4.1191 34 1 7.6010 -0.1175 -3.0207 35 1 8.6306 -2.0574 -4.9763 36 1 9.6680 -1.3526 -3.7133 37 1 10.6499 -3.4476 -4.6054 38 1 10.2109 -3.6275 -2.8897 39 1 9.1735 -4.3324 -4.1527 40 1 8.4768 -1.5026 -1.0898 41 1 9.7138 -2.5142 1.8382 42 1 2.5967 -1.2203 -2.0939 43 1 3.7447 -2.1387 -1.0900 44 1 2.5979 -1.4188 0.9551 45 1 1.4022 -2.1334 -0.1557 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732209471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:00 Heat of formation + Delta-G solvation = -41.719542 kcal Electronic energy + Delta-G solvation = -22456.571687 eV Core-core repulsion = 19280.239955 eV Total energy + Delta-G solvation = -3176.331732 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.94259 -37.87832 -36.60968 -33.72070 -32.86297 -32.32590 -31.09276 -29.76382 -28.15982 -26.47670 -23.78487 -23.00749 -22.67299 -21.47149 -20.11309 -19.50527 -18.47061 -17.40515 -16.71898 -15.64696 -15.35889 -14.93849 -14.82145 -14.49697 -14.02495 -13.95138 -13.58366 -13.37969 -13.21533 -13.08514 -12.64643 -12.49706 -12.38027 -12.02853 -11.69938 -11.46396 -11.35488 -11.11100 -10.97320 -10.91833 -10.74014 -10.60968 -10.43552 -10.22889 -10.21431 -10.02355 -9.56231 -9.42359 -9.09850 -8.96598 -8.57751 -7.05498 -5.83822 -3.12960 2.14826 2.99821 3.37666 3.43723 3.45221 3.62122 4.51083 4.52252 4.66126 4.90555 4.96470 5.06671 5.23011 5.34766 5.36622 5.42399 5.43588 5.52149 5.56092 5.69627 5.75444 5.79527 5.83056 5.91882 5.95468 5.97191 6.02907 6.05963 6.14549 6.18731 6.29750 6.42298 6.54864 6.55492 6.57307 6.60723 6.77973 6.93395 7.02569 7.22763 7.64221 7.99173 8.33608 8.62931 9.45570 10.00772 10.36809 11.38058 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016275 B = 0.004415 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.067006 B = 6340.830773 C = 7454.015750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.088 4.088 4 C -0.093 4.093 5 C -0.107 4.107 6 C 0.514 3.486 7 O -0.557 6.557 8 N -0.711 5.711 9 C 0.114 3.886 10 C 0.163 3.837 11 H 0.053 0.947 12 C -0.134 4.134 13 C -0.146 4.146 14 N -0.721 5.721 15 C -0.237 4.237 16 H 0.073 0.927 17 C -0.011 4.011 18 N -0.929 5.929 19 Si 0.902 3.098 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.106 4.106 24 C -0.086 4.086 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.410 0.590 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.056 0.944 37 H 0.032 0.968 38 H 0.084 0.916 39 H 0.040 0.960 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.575 3.373 -3.557 14.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.114 4.114 3 C -0.125 4.125 4 C -0.131 4.131 5 C -0.129 4.129 6 C 0.300 3.700 7 O -0.436 6.436 8 N -0.363 5.363 9 C -0.010 4.010 10 C 0.053 3.947 11 H 0.071 0.929 12 C -0.175 4.175 13 C -0.204 4.204 14 N -0.364 5.364 15 C -0.368 4.368 16 H 0.091 0.909 17 C -0.207 4.207 18 N -0.577 5.577 19 Si 0.733 3.267 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.144 4.144 24 C -0.123 4.123 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.246 0.754 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.103 0.897 39 H 0.059 0.941 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.485 3.822 -4.082 14.598 hybrid contribution 0.481 -1.006 0.950 1.465 sum -13.003 2.817 -3.132 13.669 Atomic orbital electron populations 1.23581 0.94985 1.01623 1.03966 1.22039 0.95075 0.96035 0.98281 1.20869 0.97596 0.94655 0.99382 1.21320 0.96391 0.96860 0.98523 1.21312 0.95030 0.97270 0.99255 1.20559 0.82339 0.81761 0.85332 1.90647 1.74301 1.36230 1.42389 1.46010 1.30447 1.25265 1.34530 1.21650 0.89087 0.99785 0.90525 1.20561 0.92314 0.94420 0.87402 0.92914 1.22070 0.98891 0.98607 0.97912 1.21769 0.98654 0.96589 1.03353 1.42456 1.76413 1.07597 1.09890 1.19207 1.35259 0.86388 0.95986 0.90925 1.24723 1.02183 0.96716 0.97069 1.69664 1.51685 1.25644 1.10755 0.86271 0.78438 0.83501 0.78455 1.21766 1.21862 1.20775 1.21526 0.97057 0.96723 0.99096 1.20831 0.97486 0.94705 0.99289 0.88653 0.88618 0.90707 0.91165 0.90880 0.91334 0.88272 0.75352 0.92029 0.91972 0.93878 0.92547 0.94886 0.89684 0.94133 0.78104 0.93503 0.91410 0.90751 0.90390 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.89 13.99 29.02 0.41 -1.49 16 2 C -0.11 -1.16 5.35 -100.50 -0.54 -1.70 16 3 C -0.09 -0.89 6.03 -27.49 -0.17 -1.06 16 4 C -0.09 -1.14 4.53 -26.64 -0.12 -1.26 16 5 C -0.11 -1.40 2.42 -91.82 -0.22 -1.62 16 6 C 0.51 8.42 7.15 -10.98 -0.08 8.34 16 7 O -0.56 -10.81 15.94 5.55 0.09 -10.73 16 8 N -0.71 -11.70 5.26 -60.30 -0.32 -12.02 16 9 C 0.11 1.94 5.23 -4.04 -0.02 1.92 16 10 C 0.16 2.99 2.59 -67.93 -0.18 2.82 16 11 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 12 C -0.13 -2.31 5.61 -26.73 -0.15 -2.46 16 13 C -0.15 -2.59 9.18 37.15 0.34 -2.25 16 14 N -0.72 -16.22 4.51 -53.42 -0.24 -16.46 16 15 C -0.24 -5.94 7.75 -15.06 -0.12 -6.06 16 16 H 0.07 1.78 7.32 -52.49 -0.38 1.40 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 18 N -0.93 -26.43 13.06 55.49 0.72 -25.71 16 19 Si 0.90 21.24 29.55 -169.99 -5.02 16.22 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.11 -1.21 5.14 -26.63 -0.14 -1.35 16 24 C -0.09 -0.87 6.04 -27.48 -0.17 -1.03 16 25 H 0.10 0.79 7.92 -52.48 -0.42 0.38 16 26 H 0.10 0.80 7.92 -52.49 -0.42 0.39 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.64 7.89 -51.93 -0.41 0.23 16 29 H 0.07 0.95 8.00 -51.92 -0.42 0.53 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.41 6.78 7.50 -40.82 -0.31 6.48 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 1.78 5.99 -51.93 -0.31 1.47 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.38 9.52 7.80 -40.82 -0.32 9.20 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.85 7.45 -51.93 -0.39 0.46 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.65 7.89 -51.93 -0.41 0.24 16 LS Contribution 357.78 15.07 5.39 5.39 Total: -1.00 -28.55 357.78 -8.59 -37.14 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -7.98 Total: 13.73 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -1.24 Total: -7.56 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.17 Total: -54.19 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.55 -8.59 -37.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732209471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.576 kcal (2) G-P(sol) polarization free energy of solvation -28.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds