Wall clock time and date at job start Tue Mar 31 2020 01:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.51269 * 120.85340 * 2 1 4 4 C 1.53227 * 108.53626 * 231.32334 * 3 2 1 5 5 C 1.52953 * 109.40747 * 305.37241 * 4 3 2 6 6 C 1.50703 * 109.41782 * 183.70382 * 5 4 3 7 7 O 1.21283 * 119.99488 * 359.85632 * 6 5 4 8 8 N 1.34777 * 120.00290 * 179.86072 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 H 1.09002 * 109.47682 * 64.99618 * 10 9 8 12 12 C 1.53003 * 109.47530 * 184.99929 * 10 9 8 13 13 C 1.52994 * 109.47306 * 184.99714 * 12 10 9 14 14 N 1.46506 * 109.47012 * 304.99483 * 10 9 8 15 15 C 1.36937 * 119.99934 * 154.99714 * 14 10 9 16 16 H 1.07998 * 120.00035 * 0.02562 * 15 14 10 17 17 C 1.38810 * 120.00229 * 180.02562 * 15 14 10 18 18 N 1.31626 * 119.99636 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00308 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47420 * 89.99861 * 19 17 15 21 21 H 1.48504 * 109.47183 * 210.00218 * 19 17 15 22 22 H 1.48504 * 109.46991 * 329.99840 * 19 17 15 23 23 C 1.52959 * 109.76131 * 63.63296 * 5 4 3 24 24 C 1.51272 * 120.84821 * 179.97438 * 2 1 3 25 25 H 1.08005 * 119.99835 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00418 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.62613 * 111.61206 * 3 2 1 28 28 H 1.08996 * 109.62841 * 351.03908 * 3 2 1 29 29 H 1.09009 * 109.48375 * 185.39016 * 4 3 2 30 30 H 1.08998 * 109.48279 * 65.35279 * 4 3 2 31 31 H 1.08999 * 109.41492 * 303.56284 * 5 4 3 32 32 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 33 33 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 34 34 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 35 35 H 1.09001 * 109.46709 * 305.00182 * 12 10 9 36 36 H 1.09003 * 109.46765 * 64.99671 * 12 10 9 37 37 H 1.09001 * 109.46772 * 179.97438 * 13 12 10 38 38 H 1.08994 * 109.47382 * 299.99589 * 13 12 10 39 39 H 1.09003 * 109.47243 * 60.00250 * 13 12 10 40 40 H 0.97000 * 120.00390 * 335.00529 * 14 10 9 41 41 H 0.97001 * 119.99765 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.48195 * 56.34779 * 23 5 4 43 43 H 1.09000 * 109.48499 * 176.38929 * 23 5 4 44 44 H 1.08997 * 109.62907 * 248.39149 * 24 2 1 45 45 H 1.09000 * 109.62570 * 8.77563 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1149 1.2512 -1.1342 5 6 3.9810 -0.0003 -0.9825 6 6 5.0511 -0.0007 -2.0437 7 8 5.1123 0.9091 -2.8434 8 7 5.9400 -1.0119 -2.1040 9 6 6.9840 -1.0091 -3.1318 10 6 7.8567 -2.2560 -2.9757 11 1 7.2587 -3.1454 -3.1745 12 6 9.0202 -2.1917 -3.9672 13 6 9.8213 -3.4933 -3.8987 14 7 8.3823 -2.3162 -1.6095 15 6 8.7401 -3.5211 -1.0661 16 1 8.6352 -4.4270 -1.6447 17 6 9.2376 -3.5783 0.2286 18 7 9.3659 -2.4743 0.9336 19 14 9.7263 -5.2219 0.9696 20 1 11.1561 -5.4928 0.6737 21 1 9.5242 -5.1814 2.4403 22 1 8.8870 -6.2980 0.3841 23 6 3.1137 -1.2510 -1.1348 24 6 2.0856 -1.2987 0.0006 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9352 0.0004 27 1 2.5981 1.4190 0.9545 28 1 1.4029 2.1330 -0.1599 29 1 3.7468 2.1383 -1.0890 30 1 2.5979 1.2214 -2.0933 31 1 4.4477 -0.0008 0.0025 32 1 5.8912 -1.7394 -1.4642 33 1 6.5218 -1.0104 -4.1191 34 1 7.6010 -0.1175 -3.0207 35 1 8.6306 -2.0574 -4.9763 36 1 9.6680 -1.3526 -3.7133 37 1 10.6499 -3.4476 -4.6054 38 1 10.2109 -3.6275 -2.8897 39 1 9.1735 -4.3324 -4.1527 40 1 8.4768 -1.5026 -1.0898 41 1 9.7138 -2.5142 1.8382 42 1 2.5967 -1.2203 -2.0939 43 1 3.7447 -2.1387 -1.0900 44 1 2.5979 -1.4188 0.9551 45 1 1.4022 -2.1334 -0.1557 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732209471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:59 Heat of formation + Delta-G solvation = -58.072131 kcal Electronic energy + Delta-G solvation = -22457.280788 eV Core-core repulsion = 19280.239955 eV Total energy + Delta-G solvation = -3177.040833 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.17242 -38.96814 -38.10536 -35.24571 -34.21538 -33.66079 -31.98201 -31.48062 -29.61519 -27.52485 -25.54158 -24.17234 -23.82696 -22.59301 -21.59552 -20.79763 -19.33587 -19.17722 -18.07054 -17.04733 -16.88115 -16.20511 -15.82020 -15.71589 -15.58590 -15.11732 -14.88370 -14.62389 -14.44489 -14.39912 -14.03445 -13.84680 -13.41920 -13.23352 -12.96653 -12.79152 -12.76342 -12.55876 -12.34090 -12.33891 -12.08524 -11.96230 -11.86849 -11.62686 -11.55683 -11.32854 -11.09397 -10.92778 -10.67606 -9.98256 -9.86716 -8.96451 -7.86393 -5.13471 1.40711 1.50901 1.52714 1.59319 1.68075 2.33109 2.61057 3.47468 3.63361 3.73158 3.82781 3.90859 3.97818 4.10967 4.18200 4.33518 4.38722 4.41420 4.48913 4.49142 4.56780 4.65204 4.74077 4.82789 4.86560 4.88720 5.03915 5.04743 5.10164 5.13887 5.15666 5.18880 5.21108 5.23541 5.34235 5.50344 5.59779 5.63073 5.72361 5.80462 6.03178 6.33772 6.63802 7.28902 7.41824 8.13231 8.38536 9.36548 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016275 B = 0.004415 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.067006 B = 6340.830773 C = 7454.015750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 C -0.082 4.082 4 C -0.089 4.089 5 C -0.102 4.102 6 C 0.511 3.489 7 O -0.589 6.589 8 N -0.710 5.710 9 C 0.121 3.879 10 C 0.166 3.834 11 H 0.059 0.941 12 C -0.130 4.130 13 C -0.143 4.143 14 N -0.727 5.727 15 C -0.216 4.216 16 H 0.080 0.920 17 C -0.071 4.071 18 N -0.968 5.968 19 Si 0.958 3.042 20 H -0.296 1.296 21 H -0.302 1.302 22 H -0.268 1.268 23 C -0.100 4.100 24 C -0.083 4.083 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.410 0.590 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.372 0.628 41 H 0.247 0.753 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.027 2.421 -4.359 15.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.133 4.133 3 C -0.120 4.120 4 C -0.127 4.127 5 C -0.123 4.123 6 C 0.299 3.701 7 O -0.470 6.470 8 N -0.361 5.361 9 C -0.003 4.003 10 C 0.057 3.943 11 H 0.077 0.923 12 C -0.171 4.171 13 C -0.200 4.200 14 N -0.368 5.368 15 C -0.348 4.348 16 H 0.098 0.902 17 C -0.263 4.263 18 N -0.619 5.619 19 Si 0.789 3.211 20 H -0.224 1.224 21 H -0.229 1.229 22 H -0.193 1.193 23 C -0.138 4.138 24 C -0.120 4.120 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.247 0.753 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.204 0.796 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.955 2.839 -4.929 16.000 hybrid contribution 0.900 -0.685 1.073 1.559 sum -14.055 2.154 -3.855 14.733 Atomic orbital electron populations 1.23782 0.94690 1.02632 1.02010 1.22058 0.95516 0.95772 0.99979 1.20829 0.97209 0.95439 0.98477 1.21266 0.96511 0.95802 0.99085 1.21334 0.94386 0.98733 0.97870 1.21156 0.82559 0.80909 0.85479 1.90626 1.75195 1.37316 1.43897 1.46025 1.30293 1.25368 1.34369 1.21543 0.88951 0.98392 0.91453 1.20696 0.92817 0.95203 0.85561 0.92291 1.21997 0.98017 0.98001 0.99081 1.21696 0.99522 0.97116 1.01671 1.42572 1.76425 1.06321 1.11452 1.19501 1.32473 0.87336 0.95507 0.90198 1.25346 1.03822 0.99126 0.98006 1.69809 1.54025 1.27389 1.10677 0.85362 0.77794 0.80884 0.77069 1.22358 1.22937 1.19319 1.21484 0.97076 0.95548 0.99726 1.20814 0.97270 0.95352 0.98541 0.87696 0.87617 0.90412 0.89950 0.92200 0.92236 0.88070 0.75312 0.90507 0.93456 0.90760 0.93737 0.92903 0.93264 0.93106 0.79607 0.94450 0.91618 0.90860 0.90406 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.10 13.99 67.79 0.95 -2.15 16 2 C -0.13 -2.45 5.35 -16.12 -0.09 -2.54 16 3 C -0.08 -1.56 6.03 30.10 0.18 -1.38 16 4 C -0.09 -2.13 4.53 30.65 0.14 -1.99 16 5 C -0.10 -2.62 2.42 -11.57 -0.03 -2.65 16 6 C 0.51 16.72 7.15 87.66 0.63 17.34 16 7 O -0.59 -23.01 15.94 -3.04 -0.05 -23.06 16 8 N -0.71 -23.10 5.26 -463.07 -2.43 -25.54 16 9 C 0.12 4.03 5.23 86.38 0.45 4.48 16 10 C 0.17 5.86 2.59 44.99 0.12 5.98 16 11 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 12 C -0.13 -4.24 5.61 30.59 0.17 -4.07 16 13 C -0.14 -4.77 9.18 71.98 0.66 -4.11 16 14 N -0.73 -32.54 4.51 -322.93 -1.46 -34.00 16 15 C -0.22 -10.71 7.75 84.03 0.65 -10.06 16 16 H 0.08 3.80 7.32 -2.91 -0.02 3.78 16 17 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 18 N -0.97 -56.06 13.06 21.65 0.28 -55.77 16 19 Si 0.96 43.82 29.55 68.60 2.03 45.85 16 20 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 21 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 23 C -0.10 -2.18 5.14 30.66 0.16 -2.02 16 24 C -0.08 -1.53 6.04 30.11 0.18 -1.34 16 25 H 0.10 1.46 7.92 -2.91 -0.02 1.44 16 26 H 0.11 1.47 7.92 -2.91 -0.02 1.44 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.35 7.89 -2.39 -0.02 1.33 16 29 H 0.06 1.57 8.00 -2.38 -0.02 1.55 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.41 13.42 7.50 -92.71 -0.70 12.72 16 33 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.05 2.00 5.99 -2.39 -0.01 1.99 16 39 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.37 18.65 7.80 -92.71 -0.72 17.93 16 41 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 42 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.07 1.59 7.45 -2.39 -0.02 1.57 16 44 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.08 1.34 7.89 -2.39 -0.02 1.32 16 Total: -1.00 -60.74 357.78 2.56 -58.18 By element: Atomic # 1 Polarization: 42.60 SS G_CDS: -0.46 Total: 42.15 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 4.64 Total: -7.81 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -3.61 Total: -115.31 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.05 Total: -23.06 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -60.74 2.56 -58.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732209471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.113 kcal (2) G-P(sol) polarization free energy of solvation -60.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds