Wall clock time and date at job start Tue Mar 31 2020 01:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99957 * 2 1 4 4 H 1.08998 * 109.46915 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47312 * 239.99780 * 3 2 1 6 6 C 1.53002 * 109.46603 * 65.00221 * 5 3 2 7 7 C 1.53008 * 109.46912 * 119.99852 * 3 2 1 8 8 C 1.50700 * 109.46891 * 184.99847 * 7 3 2 9 9 O 1.21280 * 120.00197 * 0.02562 * 8 7 3 10 10 N 1.34772 * 119.99769 * 180.02562 * 8 7 3 11 11 C 1.46504 * 119.99788 * 180.02562 * 10 8 7 12 12 C 1.53008 * 109.46909 * 179.97438 * 11 10 8 13 13 H 1.08999 * 110.91929 * 308.90476 * 12 11 10 14 14 C 1.55159 * 111.00409 * 184.99845 * 12 11 10 15 15 C 1.54319 * 103.10229 * 206.33828 * 14 12 11 16 16 N 1.47491 * 107.03615 * 22.23825 * 15 14 12 17 17 C 1.36933 * 125.59247 * 181.00440 * 16 15 14 18 18 H 1.08002 * 120.00071 * 173.92297 * 17 16 15 19 19 C 1.38819 * 120.00158 * 353.92393 * 17 16 15 20 20 N 1.31614 * 119.99910 * 6.82296 * 19 17 16 21 21 Si 1.86799 * 119.99779 * 186.82932 * 19 17 16 22 22 H 1.48498 * 109.47163 * 94.98454 * 21 19 17 23 23 H 1.48507 * 109.46676 * 214.98393 * 21 19 17 24 24 H 1.48494 * 109.47389 * 334.98230 * 21 19 17 25 25 C 1.47420 * 108.75894 * 1.03046 * 16 15 14 26 26 H 1.07999 * 119.99912 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99734 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.00402 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47357 * 184.99934 * 5 3 2 30 30 H 1.08998 * 109.46957 * 305.00440 * 5 3 2 31 31 H 1.09004 * 109.46759 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.47455 * 299.99678 * 6 5 3 33 33 H 1.08998 * 109.47285 * 60.00420 * 6 5 3 34 34 H 1.08997 * 109.46840 * 65.00441 * 7 3 2 35 35 H 1.08990 * 109.47276 * 305.00133 * 7 3 2 36 36 H 0.97006 * 120.00369 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.47181 * 60.00234 * 11 10 8 38 38 H 1.08996 * 109.47159 * 299.99123 * 11 10 8 39 39 H 1.09002 * 110.71401 * 324.78812 * 14 12 11 40 40 H 1.08997 * 110.72033 * 87.88056 * 14 12 11 41 41 H 1.08997 * 109.88367 * 141.69764 * 15 14 12 42 42 H 1.08999 * 109.88489 * 262.86548 * 15 14 12 43 43 H 0.96996 * 120.00338 * 179.97438 * 20 19 17 44 44 H 1.09003 * 110.36942 * 217.05488 * 25 16 15 45 45 H 1.09001 * 110.46680 * 94.77467 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3862 -1.2492 6 6 2.0564 1.4308 -2.4952 7 6 2.9431 1.3861 1.2493 8 6 3.6020 2.7400 1.3128 9 8 3.3887 3.5595 0.4446 10 7 4.4283 3.0400 2.3343 11 6 5.0684 4.3564 2.3963 12 6 5.9481 4.4374 3.6456 13 1 5.3909 4.1399 4.5339 14 6 6.5454 5.8595 3.8140 15 6 7.8409 5.6025 4.6120 16 7 8.2125 4.1925 4.3904 17 6 9.2944 3.5576 4.9396 18 1 9.4281 2.4957 4.7951 19 6 10.2193 4.2789 5.6821 20 7 9.9892 5.5419 5.9720 21 14 11.7904 3.4568 6.2697 22 1 12.8835 3.7299 5.3025 23 1 12.1624 3.9959 7.6025 24 1 11.5741 1.9912 6.3714 25 6 7.2278 3.5802 3.4800 26 1 -0.5400 0.9353 0.0004 27 1 -0.5399 -0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 3.5541 2.2879 -1.2055 30 1 3.5906 0.5105 -1.2951 31 1 2.6831 1.4881 -3.3853 32 1 1.4456 0.5291 -2.5390 33 1 1.4090 2.3065 -2.4493 34 1 3.7085 0.6113 1.2056 35 1 2.3279 1.2395 2.1370 36 1 4.5992 2.3844 3.0286 37 1 4.3028 5.1309 2.4407 38 1 5.6833 4.5036 1.5085 39 1 6.7715 6.3001 2.8430 40 1 5.8658 6.4989 4.3773 41 1 8.6339 6.2585 4.2528 42 1 7.6638 5.7782 5.6731 43 1 10.6353 6.0459 6.4912 44 1 7.0331 2.5478 3.7706 45 1 7.5826 3.6232 2.4502 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753132643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:09 Heat of formation + Delta-G solvation = -35.240759 kcal Electronic energy + Delta-G solvation = -21791.291657 eV Core-core repulsion = 18615.240867 eV Total energy + Delta-G solvation = -3176.050791 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.95323 -39.32481 -37.65082 -35.92061 -34.30268 -32.61939 -31.97367 -31.10185 -29.73783 -27.34287 -25.91281 -24.49126 -22.70655 -22.05877 -21.50078 -20.87458 -20.44828 -18.86464 -17.83174 -17.29234 -16.70389 -16.60889 -16.00623 -15.80034 -15.60930 -15.42062 -14.77569 -14.74579 -14.26006 -14.04256 -13.83974 -13.70191 -13.52521 -13.28903 -13.03837 -12.76383 -12.75694 -12.64507 -12.05627 -12.02946 -12.00019 -11.86350 -11.84183 -11.60690 -11.55859 -11.50573 -11.42268 -10.70507 -10.63530 -10.15802 -9.98584 -8.89274 -7.86456 -5.20715 1.45698 1.45902 1.47965 1.56537 1.73919 2.32448 2.49522 3.32487 3.61734 3.72415 3.83662 3.87125 4.03340 4.05988 4.14363 4.27792 4.43669 4.46103 4.46451 4.60223 4.63450 4.67048 4.72004 4.82249 4.87775 4.94193 5.00121 5.06999 5.07690 5.08307 5.14008 5.23243 5.37425 5.44719 5.46393 5.48812 5.56955 5.67847 5.77121 5.81759 5.99002 6.19603 6.64412 7.09528 7.34538 7.77588 8.43076 9.24908 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030454 B = 0.002853 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.197380 B = 9811.654071 C =10180.011509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.147 4.147 3 C -0.043 4.043 4 H 0.062 0.938 5 C -0.123 4.123 6 C -0.145 4.145 7 C -0.129 4.129 8 C 0.507 3.493 9 O -0.580 6.580 10 N -0.721 5.721 11 C 0.145 3.855 12 C -0.094 4.094 13 H 0.090 0.910 14 C -0.124 4.124 15 C 0.182 3.818 16 N -0.630 5.630 17 C -0.242 4.242 18 H 0.084 0.916 19 C -0.068 4.068 20 N -0.951 5.951 21 Si 0.977 3.023 22 H -0.290 1.290 23 H -0.295 1.295 24 H -0.265 1.265 25 C 0.139 3.861 26 H 0.090 0.910 27 H 0.111 0.889 28 H 0.123 0.877 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.413 0.587 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.007 0.993 42 H 0.010 0.990 43 H 0.246 0.754 44 H 0.049 0.951 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.550 -10.880 -10.491 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.165 4.165 3 C -0.062 4.062 4 H 0.081 0.919 5 C -0.160 4.160 6 C -0.202 4.202 7 C -0.168 4.168 8 C 0.296 3.704 9 O -0.460 6.460 10 N -0.373 5.373 11 C 0.021 3.979 12 C -0.114 4.114 13 H 0.109 0.891 14 C -0.163 4.163 15 C 0.057 3.943 16 N -0.357 5.357 17 C -0.371 4.371 18 H 0.102 0.898 19 C -0.261 4.261 20 N -0.600 5.600 21 Si 0.805 3.195 22 H -0.217 1.217 23 H -0.222 1.222 24 H -0.189 1.189 25 C 0.014 3.986 26 H 0.109 0.891 27 H 0.129 0.871 28 H 0.140 0.860 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.249 0.751 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.025 0.975 42 H 0.028 0.972 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -18.525 -10.260 -10.975 23.852 hybrid contribution 1.383 -0.060 0.828 1.613 sum -17.142 -10.320 -10.148 22.435 Atomic orbital electron populations 1.23989 0.95955 1.02274 1.00649 1.22914 0.95993 0.97625 0.99986 1.20085 0.96533 0.95949 0.93601 0.91948 1.21628 0.98184 1.01963 0.94234 1.21702 0.99657 1.01553 0.97294 1.21744 1.00742 0.93407 1.00948 1.21261 0.78351 0.90380 0.80427 1.90660 1.63664 1.52007 1.39674 1.46055 1.47044 1.17019 1.27162 1.21089 0.95084 0.85135 0.96639 1.22417 0.94949 0.96280 0.97759 0.89127 1.22716 0.96748 0.96302 1.00500 1.21001 0.92397 0.84984 0.95870 1.44931 1.28459 1.08755 1.53539 1.19484 0.98882 0.92907 1.25844 0.89805 1.25690 1.01999 0.96820 1.01596 1.70194 1.36295 1.09519 1.44035 0.85078 0.79553 0.78154 0.76690 1.21687 1.22191 1.18907 1.21743 0.88375 0.96081 0.92371 0.89116 0.87125 0.85963 0.92516 0.91540 0.92890 0.91931 0.93788 0.86729 0.86734 0.75067 0.91178 0.92686 0.91289 0.89669 0.97498 0.97190 0.94432 0.93237 0.96581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.35 14.32 67.78 0.97 -1.38 16 2 C -0.15 -1.91 7.75 25.65 0.20 -1.71 16 3 C -0.04 -0.73 1.80 -11.54 -0.02 -0.75 16 4 H 0.06 1.30 7.60 -2.39 -0.02 1.28 16 5 C -0.12 -2.36 5.18 30.59 0.16 -2.20 16 6 C -0.14 -2.54 9.73 71.98 0.70 -1.84 16 7 C -0.13 -1.97 5.16 29.85 0.15 -1.81 16 8 C 0.51 11.71 7.51 87.66 0.66 12.37 16 9 O -0.58 -17.99 13.99 -3.03 -0.04 -18.04 16 10 N -0.72 -15.74 5.50 -463.05 -2.55 -18.29 16 11 C 0.14 3.82 5.13 86.38 0.44 4.26 16 12 C -0.09 -2.90 3.05 -9.40 -0.03 -2.93 16 13 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 14 C -0.12 -4.37 6.41 31.78 0.20 -4.17 16 15 C 0.18 8.99 5.40 86.64 0.47 9.46 16 16 N -0.63 -32.07 3.41 -690.80 -2.35 -34.43 16 17 C -0.24 -13.51 10.26 84.04 0.86 -12.64 16 18 H 0.08 4.43 7.84 -2.91 -0.02 4.41 16 19 C -0.07 -3.89 5.48 84.86 0.47 -3.43 16 20 N -0.95 -57.72 10.36 21.65 0.22 -57.50 16 21 Si 0.98 45.70 29.56 68.60 2.03 47.73 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 23 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 24 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 25 C 0.14 5.36 6.65 86.86 0.58 5.93 16 26 H 0.09 1.19 7.83 -2.91 -0.02 1.17 16 27 H 0.11 1.03 8.06 -2.91 -0.02 1.00 16 28 H 0.12 1.26 8.06 -2.91 -0.02 1.24 16 29 H 0.06 1.44 5.88 -2.39 -0.01 1.42 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.06 0.95 7.38 -2.39 -0.02 0.93 16 33 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.41 7.15 8.47 -92.70 -0.79 6.36 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.05 1.63 7.96 -2.39 -0.02 1.61 16 39 H 0.07 2.32 8.04 -2.39 -0.02 2.30 16 40 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.01 0.38 7.37 -2.39 -0.02 0.36 16 42 H 0.01 0.54 7.56 -2.39 -0.02 0.52 16 43 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 44 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.02 0.65 7.90 -2.39 -0.02 0.63 16 Total: -1.00 -70.29 359.50 3.28 -67.02 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.15 Total: 14.34 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 5.81 Total: -0.83 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -4.68 Total: -110.21 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.04 Total: -18.04 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -70.29 3.28 -67.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753132643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.777 kcal (2) G-P(sol) polarization free energy of solvation -70.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds