Wall clock time and date at job start Tue Mar 31 2020 02:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47657 * 2 1 4 4 N 1.46494 * 109.47481 * 184.93778 * 3 2 1 5 5 C 1.34774 * 120.00232 * 265.40540 * 4 3 2 6 6 O 1.21277 * 120.00303 * 179.97438 * 5 4 3 7 7 C 1.50697 * 119.99824 * 359.97438 * 5 4 3 8 8 H 1.09002 * 115.55229 * 34.32687 * 7 5 4 9 9 C 1.53001 * 117.49886 * 248.62233 * 7 5 4 10 10 C 1.53002 * 60.00135 * 252.50723 * 9 7 5 11 11 H 1.08993 * 117.51807 * 107.47775 * 10 9 7 12 12 C 1.52996 * 117.49968 * 252.50949 * 10 9 7 13 13 C 1.46501 * 119.99949 * 85.40348 * 4 3 2 14 14 H 1.09003 * 110.88888 * 0.02562 * 13 4 3 15 15 C 1.55159 * 111.00383 * 123.88411 * 13 4 3 16 16 C 1.54323 * 102.94174 * 153.57688 * 15 13 4 17 17 N 1.47013 * 107.27216 * 337.80312 * 16 15 13 18 18 C 1.36941 * 125.64950 * 178.97591 * 17 16 15 19 19 H 1.07996 * 119.99786 * 179.97438 * 18 17 16 20 20 C 1.38817 * 119.99745 * 359.97438 * 18 17 16 21 21 N 1.31611 * 120.00096 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99742 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47087 * 90.00207 * 22 20 18 24 24 H 1.48496 * 109.46835 * 210.00084 * 22 20 18 25 25 H 1.48496 * 109.47347 * 330.00332 * 22 20 18 26 26 C 1.47464 * 108.72403 * 358.98075 * 17 16 15 27 27 H 1.09004 * 109.47217 * 300.00406 * 1 2 3 28 28 H 1.09004 * 109.46882 * 60.00255 * 1 2 3 29 29 H 1.09001 * 109.47411 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46735 * 239.99557 * 2 1 3 31 31 H 1.09000 * 109.46918 * 120.00499 * 2 1 3 32 32 H 1.08999 * 109.47099 * 64.92977 * 3 2 1 33 33 H 1.09003 * 109.46899 * 304.93925 * 3 2 1 34 34 H 1.09001 * 117.49915 * 359.97438 * 9 7 5 35 35 H 1.09005 * 117.50011 * 145.02174 * 9 7 5 36 36 H 1.08998 * 109.47192 * 128.61719 * 12 10 9 37 37 H 1.09002 * 109.47102 * 248.62320 * 12 10 9 38 38 H 1.09003 * 109.47426 * 8.61879 * 12 10 9 39 39 H 1.09006 * 110.71863 * 271.93746 * 15 13 4 40 40 H 1.09001 * 110.72318 * 35.03114 * 15 13 4 41 41 H 1.09000 * 109.88371 * 97.22609 * 16 15 13 42 42 H 1.08998 * 109.87992 * 218.23252 * 16 15 13 43 43 H 0.97002 * 120.00264 * 179.97438 * 21 20 18 44 44 H 1.09001 * 110.34559 * 265.25105 * 26 17 16 45 45 H 1.09003 * 110.40937 * 142.91274 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5002 1.4440 -0.1189 5 6 4.2664 1.5049 0.9882 6 8 5.4752 1.5058 0.8898 7 6 3.6211 1.5718 2.3484 8 1 2.6887 1.0173 2.4541 9 6 3.7594 2.8783 3.1324 10 6 4.5450 1.6391 3.5661 11 1 5.6195 1.6346 3.3835 12 6 4.0891 0.9234 4.8392 13 6 4.1276 1.3795 -1.4412 14 1 3.3737 1.3357 -2.2273 15 6 5.0891 2.5775 -1.6596 16 6 6.1047 2.0238 -2.6811 17 7 6.0676 0.5574 -2.5825 18 6 6.8088 -0.3122 -3.3373 19 1 6.7092 -1.3771 -3.1877 20 6 7.6879 0.1751 -4.2947 21 7 7.8088 1.4728 -4.4773 22 14 8.6994 -1.0112 -5.3238 23 1 7.9468 -1.3652 -6.5540 24 1 9.9854 -0.3697 -5.6976 25 1 8.9701 -2.2417 -4.5379 26 6 5.1002 0.1776 -1.5364 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.7507 1.9301 0.9308 33 1 1.6064 1.9811 -0.8425 34 1 4.3175 3.6894 2.6646 35 1 2.9178 3.1837 3.7542 36 1 3.9615 -0.1392 4.6328 37 1 4.8398 1.0547 5.6185 38 1 3.1410 1.3450 5.1734 39 1 4.5530 3.4319 -2.0731 40 1 5.5846 2.8493 -0.7276 41 1 5.8252 2.3349 -3.6877 42 1 7.1043 2.3884 -2.4449 43 1 8.4234 1.8134 -5.1461 44 1 5.6105 0.0264 -0.5852 45 1 4.5613 -0.7244 -1.8264 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753318814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:27 Heat of formation + Delta-G solvation = 12.743744 kcal Electronic energy + Delta-G solvation = -23119.387617 eV Core-core repulsion = 19945.417590 eV Total energy + Delta-G solvation = -3173.970026 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.27165 -37.67342 -36.06275 -35.87968 -32.95697 -31.73255 -29.24427 -28.75856 -27.35046 -26.02630 -24.75917 -23.39613 -21.72491 -21.21272 -20.23698 -19.95351 -18.54068 -17.12629 -16.71467 -15.90087 -15.06441 -14.79115 -14.60230 -14.47228 -14.09573 -13.86132 -13.40804 -13.28627 -13.00918 -12.91113 -12.27144 -12.24560 -12.14062 -12.07637 -11.76117 -11.61626 -11.54519 -11.36419 -10.87989 -10.81057 -10.76737 -10.63278 -10.34990 -10.21833 -10.07148 -10.00540 -9.82041 -9.56721 -9.00719 -8.51135 -8.23245 -6.66684 -5.59398 -2.91733 2.72654 3.16561 3.46903 3.51616 3.54193 3.80592 4.44994 4.60785 4.69772 4.73008 4.81318 4.88094 5.07706 5.19900 5.21723 5.29820 5.47217 5.50708 5.52799 5.56925 5.57995 5.61343 5.68848 5.70411 5.85499 5.88384 5.89326 5.93092 5.96008 5.99301 6.19137 6.23997 6.34585 6.58411 6.67554 6.77475 6.82844 7.30328 7.66240 7.73773 7.79950 7.95186 8.37868 8.55077 9.34072 9.94605 10.62081 11.52384 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019357 B = 0.004613 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.174319 B = 6068.215057 C = 6712.534726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.146 4.146 3 C 0.111 3.889 4 N -0.601 5.601 5 C 0.538 3.462 6 O -0.516 6.516 7 C -0.189 4.189 8 H 0.120 0.880 9 C -0.151 4.151 10 C -0.125 4.125 11 H 0.118 0.882 12 C -0.122 4.122 13 C 0.132 3.868 14 H 0.089 0.911 15 C -0.155 4.155 16 C 0.186 3.814 17 N -0.602 5.602 18 C -0.222 4.222 19 H 0.076 0.924 20 C -0.010 4.010 21 N -0.923 5.923 22 Si 0.911 3.089 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.128 3.872 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.043 0.957 42 H 0.041 0.959 43 H 0.251 0.749 44 H 0.042 0.958 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.951 1.791 15.155 22.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C -0.013 4.013 4 N -0.333 5.333 5 C 0.325 3.675 6 O -0.392 6.392 7 C -0.210 4.210 8 H 0.137 0.863 9 C -0.189 4.189 10 C -0.143 4.143 11 H 0.136 0.864 12 C -0.179 4.179 13 C 0.028 3.972 14 H 0.107 0.893 15 C -0.194 4.194 16 C 0.061 3.939 17 N -0.329 5.329 18 C -0.351 4.351 19 H 0.094 0.906 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.002 3.998 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -15.124 1.807 14.915 21.318 hybrid contribution 0.345 -0.632 -0.736 1.029 sum -14.779 1.175 14.179 20.515 Atomic orbital electron populations 1.21702 0.95309 1.01864 1.01758 1.22001 0.95848 0.97469 1.03125 1.21636 0.80116 0.96739 1.02802 1.47873 1.05931 1.73200 1.06313 1.19580 0.86876 0.76443 0.84600 1.90744 1.13862 1.48162 1.86407 1.22396 1.02559 1.04509 0.91536 0.86255 1.23070 1.02801 0.91035 1.01951 1.22366 0.98886 0.99695 0.93382 0.86436 1.21383 1.00959 1.00162 0.95378 1.22381 0.94836 0.98321 0.81635 0.89262 1.23252 0.98189 0.96192 1.01763 1.21027 0.95301 0.83055 0.94531 1.44328 1.46018 1.02194 1.40324 1.19054 1.15735 0.88559 1.11744 0.90608 1.24781 1.00035 0.96072 0.99717 1.69973 1.40102 1.10431 1.36590 0.86122 0.79627 0.79816 0.80247 1.21720 1.21722 1.20771 1.21850 0.90636 0.93577 0.93787 0.92792 0.92525 0.92560 0.91106 0.91834 0.90333 0.90582 0.88327 0.88130 0.92025 0.91804 0.92573 0.92875 0.90561 0.93864 0.94033 0.93896 0.94001 0.95174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.77 16 2 C -0.15 -1.45 6.26 -26.73 -0.17 -1.62 16 3 C 0.11 1.18 5.06 -4.05 -0.02 1.16 16 4 N -0.60 -9.14 2.56 -163.68 -0.42 -9.56 16 5 C 0.54 8.77 6.73 -10.99 -0.07 8.69 16 6 O -0.52 -10.84 12.29 5.56 0.07 -10.78 16 7 C -0.19 -2.23 4.51 -91.77 -0.41 -2.64 16 8 H 0.12 1.15 6.90 -51.93 -0.36 0.80 16 9 C -0.15 -1.52 9.88 -26.73 -0.26 -1.79 16 10 C -0.12 -1.40 5.92 -90.62 -0.54 -1.94 16 11 H 0.12 1.60 7.67 -51.93 -0.40 1.20 16 12 C -0.12 -1.03 10.19 37.16 0.38 -0.65 16 13 C 0.13 2.49 3.55 -65.78 -0.23 2.26 16 14 H 0.09 1.58 7.94 -51.93 -0.41 1.17 16 15 C -0.15 -3.27 6.30 -24.90 -0.16 -3.43 16 16 C 0.19 4.92 5.37 -3.07 -0.02 4.90 16 17 N -0.60 -16.65 3.40 -170.05 -0.58 -17.23 16 18 C -0.22 -6.59 10.28 -15.06 -0.15 -6.75 16 19 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 20 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 21 N -0.92 -28.43 10.31 55.49 0.57 -27.85 16 22 Si 0.91 23.06 29.55 -169.99 -5.02 18.04 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.13 2.97 6.61 -2.51 -0.02 2.95 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 32 H 0.08 0.69 6.38 -51.93 -0.33 0.36 16 33 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 34 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.10 0.76 8.05 -51.93 -0.42 0.34 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.08 1.70 5.92 -51.93 -0.31 1.40 16 41 H 0.04 1.22 7.38 -51.93 -0.38 0.84 16 42 H 0.04 1.23 7.50 -51.93 -0.39 0.84 16 43 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.04 1.06 5.87 -51.93 -0.30 0.75 16 45 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 352.36 15.07 5.31 5.31 Total: -1.00 -33.98 352.36 -9.36 -43.34 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.89 Total: -1.28 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.40 Total: 0.00 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.42 Total: -54.64 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.07 Total: -10.78 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.98 -9.36 -43.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753318814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.086 kcal (2) G-P(sol) polarization free energy of solvation -33.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds