Wall clock time and date at job start Tue Mar 31 2020 02:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47657 * 2 1 4 4 N 1.46494 * 109.47481 * 184.93778 * 3 2 1 5 5 C 1.34774 * 120.00232 * 265.40540 * 4 3 2 6 6 O 1.21277 * 120.00303 * 179.97438 * 5 4 3 7 7 C 1.50697 * 119.99824 * 359.97438 * 5 4 3 8 8 H 1.09002 * 115.55229 * 34.32687 * 7 5 4 9 9 C 1.53001 * 117.49886 * 248.62233 * 7 5 4 10 10 C 1.53002 * 60.00135 * 252.50723 * 9 7 5 11 11 H 1.08993 * 117.51807 * 107.47775 * 10 9 7 12 12 C 1.52996 * 117.49968 * 252.50949 * 10 9 7 13 13 C 1.46501 * 119.99949 * 85.40348 * 4 3 2 14 14 H 1.09003 * 110.88888 * 0.02562 * 13 4 3 15 15 C 1.55159 * 111.00383 * 123.88411 * 13 4 3 16 16 C 1.54323 * 102.94174 * 153.57688 * 15 13 4 17 17 N 1.47013 * 107.27216 * 337.80312 * 16 15 13 18 18 C 1.36941 * 125.64950 * 178.97591 * 17 16 15 19 19 H 1.07996 * 119.99786 * 179.97438 * 18 17 16 20 20 C 1.38817 * 119.99745 * 359.97438 * 18 17 16 21 21 N 1.31611 * 120.00096 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99742 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47087 * 90.00207 * 22 20 18 24 24 H 1.48496 * 109.46835 * 210.00084 * 22 20 18 25 25 H 1.48496 * 109.47347 * 330.00332 * 22 20 18 26 26 C 1.47464 * 108.72403 * 358.98075 * 17 16 15 27 27 H 1.09004 * 109.47217 * 300.00406 * 1 2 3 28 28 H 1.09004 * 109.46882 * 60.00255 * 1 2 3 29 29 H 1.09001 * 109.47411 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46735 * 239.99557 * 2 1 3 31 31 H 1.09000 * 109.46918 * 120.00499 * 2 1 3 32 32 H 1.08999 * 109.47099 * 64.92977 * 3 2 1 33 33 H 1.09003 * 109.46899 * 304.93925 * 3 2 1 34 34 H 1.09001 * 117.49915 * 359.97438 * 9 7 5 35 35 H 1.09005 * 117.50011 * 145.02174 * 9 7 5 36 36 H 1.08998 * 109.47192 * 128.61719 * 12 10 9 37 37 H 1.09002 * 109.47102 * 248.62320 * 12 10 9 38 38 H 1.09003 * 109.47426 * 8.61879 * 12 10 9 39 39 H 1.09006 * 110.71863 * 271.93746 * 15 13 4 40 40 H 1.09001 * 110.72318 * 35.03114 * 15 13 4 41 41 H 1.09000 * 109.88371 * 97.22609 * 16 15 13 42 42 H 1.08998 * 109.87992 * 218.23252 * 16 15 13 43 43 H 0.97002 * 120.00264 * 179.97438 * 21 20 18 44 44 H 1.09001 * 110.34559 * 265.25105 * 26 17 16 45 45 H 1.09003 * 110.40937 * 142.91274 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5002 1.4440 -0.1189 5 6 4.2664 1.5049 0.9882 6 8 5.4752 1.5058 0.8898 7 6 3.6211 1.5718 2.3484 8 1 2.6887 1.0173 2.4541 9 6 3.7594 2.8783 3.1324 10 6 4.5450 1.6391 3.5661 11 1 5.6195 1.6346 3.3835 12 6 4.0891 0.9234 4.8392 13 6 4.1276 1.3795 -1.4412 14 1 3.3737 1.3357 -2.2273 15 6 5.0891 2.5775 -1.6596 16 6 6.1047 2.0238 -2.6811 17 7 6.0676 0.5574 -2.5825 18 6 6.8088 -0.3122 -3.3373 19 1 6.7092 -1.3771 -3.1877 20 6 7.6879 0.1751 -4.2947 21 7 7.8088 1.4728 -4.4773 22 14 8.6994 -1.0112 -5.3238 23 1 7.9468 -1.3652 -6.5540 24 1 9.9854 -0.3697 -5.6976 25 1 8.9701 -2.2417 -4.5379 26 6 5.1002 0.1776 -1.5364 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.7507 1.9301 0.9308 33 1 1.6064 1.9811 -0.8425 34 1 4.3175 3.6894 2.6646 35 1 2.9178 3.1837 3.7542 36 1 3.9615 -0.1392 4.6328 37 1 4.8398 1.0547 5.6185 38 1 3.1410 1.3450 5.1734 39 1 4.5530 3.4319 -2.0731 40 1 5.5846 2.8493 -0.7276 41 1 5.8252 2.3349 -3.6877 42 1 7.1043 2.3884 -2.4449 43 1 8.4234 1.8134 -5.1461 44 1 5.6105 0.0264 -0.5852 45 1 4.5613 -0.7244 -1.8264 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753318814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:26 Heat of formation + Delta-G solvation = -7.737270 kcal Electronic energy + Delta-G solvation = -23120.275740 eV Core-core repulsion = 19945.417590 eV Total energy + Delta-G solvation = -3174.858150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55632 -39.06575 -37.46200 -37.08382 -34.56999 -33.27028 -31.10589 -29.82573 -28.94801 -26.97258 -26.66392 -24.73640 -22.61612 -22.36635 -22.01617 -21.36667 -19.75677 -18.95252 -18.15092 -17.25975 -16.73457 -16.31809 -16.00026 -15.67854 -15.47065 -14.96005 -14.73963 -14.45408 -14.22307 -14.09559 -13.76327 -13.69120 -13.64956 -13.03621 -12.93196 -12.88422 -12.77125 -12.68132 -12.44164 -12.25364 -12.08928 -12.05132 -11.99299 -11.87283 -11.68628 -11.50699 -11.24068 -10.91400 -10.73659 -10.44310 -9.61451 -8.89729 -7.87116 -5.23768 1.42061 1.45980 1.53918 1.54905 1.94913 2.48356 2.88937 3.29825 3.47183 3.70204 3.80439 3.87100 3.91256 3.98452 4.05874 4.15854 4.21895 4.30580 4.44034 4.45106 4.57704 4.64827 4.71591 4.74882 4.77720 4.88545 4.90843 4.96139 4.97462 5.02882 5.05960 5.12630 5.24554 5.26543 5.31028 5.38775 5.44867 5.50509 5.61347 5.67227 5.76849 6.15779 6.52477 7.06291 7.29812 7.73098 8.39479 9.23537 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019357 B = 0.004613 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.174319 B = 6068.215057 C = 6712.534726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.142 4.142 3 C 0.106 3.894 4 N -0.597 5.597 5 C 0.528 3.472 6 O -0.576 6.576 7 C -0.190 4.190 8 H 0.151 0.849 9 C -0.130 4.130 10 C -0.136 4.136 11 H 0.081 0.919 12 C -0.115 4.115 13 C 0.152 3.848 14 H 0.110 0.890 15 C -0.140 4.140 16 C 0.196 3.804 17 N -0.623 5.623 18 C -0.247 4.247 19 H 0.079 0.921 20 C -0.067 4.067 21 N -0.952 5.952 22 Si 0.984 3.016 23 H -0.279 1.279 24 H -0.293 1.293 25 H -0.271 1.271 26 C 0.128 3.872 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.140 0.860 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.019 0.981 42 H -0.006 1.006 43 H 0.248 0.752 44 H 0.020 0.980 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.101 1.543 16.550 25.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.181 4.181 3 C -0.016 4.016 4 N -0.327 5.327 5 C 0.318 3.682 6 O -0.455 6.455 7 C -0.211 4.211 8 H 0.169 0.831 9 C -0.167 4.167 10 C -0.155 4.155 11 H 0.099 0.901 12 C -0.172 4.172 13 C 0.047 3.953 14 H 0.128 0.872 15 C -0.179 4.179 16 C 0.071 3.929 17 N -0.349 5.349 18 C -0.376 4.376 19 H 0.097 0.903 20 C -0.259 4.259 21 N -0.601 5.601 22 Si 0.812 3.188 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.196 1.196 26 C 0.001 3.999 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.158 0.842 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.038 0.962 42 H 0.012 0.988 43 H 0.057 0.943 44 H 0.037 0.963 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -18.346 1.547 16.339 24.615 hybrid contribution 1.361 -0.562 -1.132 1.857 sum -16.985 0.985 15.207 22.819 Atomic orbital electron populations 1.21661 0.93111 1.02375 1.02899 1.21950 0.97634 0.96551 1.01949 1.22005 0.76777 0.97764 1.05039 1.47926 1.07957 1.72418 1.04440 1.20468 0.86365 0.74948 0.86406 1.90728 1.16651 1.50745 1.87397 1.22387 1.03386 1.06654 0.88627 0.83100 1.23187 1.03151 0.89585 1.00802 1.22394 0.97160 1.01442 0.94524 0.90103 1.21368 1.02219 0.99813 0.93767 1.21993 0.94231 0.94560 0.84512 0.87247 1.23031 0.97497 0.97858 0.99477 1.20745 0.94405 0.83002 0.94767 1.44642 1.46860 1.02543 1.40889 1.19466 1.16562 0.89234 1.12333 0.90285 1.25724 1.01218 0.97936 1.01049 1.70209 1.40573 1.12340 1.37007 0.84998 0.77532 0.77724 0.78568 1.20505 1.21891 1.19638 1.21904 0.90659 0.95893 0.91400 0.90846 0.92186 0.92439 0.93504 0.91948 0.87294 0.89195 0.90010 0.84182 0.92154 0.91429 0.90046 0.89941 0.91981 0.96240 0.98784 0.94308 0.96258 0.94513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.91 71.98 0.71 -0.94 16 2 C -0.14 -2.43 6.26 30.59 0.19 -2.24 16 3 C 0.11 1.89 5.06 86.38 0.44 2.33 16 4 N -0.60 -17.31 2.56 -790.16 -2.02 -19.33 16 5 C 0.53 17.03 6.73 87.66 0.59 17.62 16 6 O -0.58 -25.31 12.29 -3.02 -0.04 -25.35 16 7 C -0.19 -4.03 4.51 -11.54 -0.05 -4.09 16 8 H 0.15 2.24 6.90 -2.39 -0.02 2.23 16 9 C -0.13 -2.25 9.88 30.60 0.30 -1.95 16 10 C -0.14 -2.90 5.92 -10.79 -0.06 -2.96 16 11 H 0.08 2.32 7.67 -2.39 -0.02 2.30 16 12 C -0.11 -1.63 10.19 71.98 0.73 -0.90 16 13 C 0.15 5.70 3.55 46.38 0.16 5.86 16 14 H 0.11 3.70 7.94 -2.39 -0.02 3.68 16 15 C -0.14 -6.01 6.30 31.78 0.20 -5.81 16 16 C 0.20 10.93 5.37 86.73 0.47 11.39 16 17 N -0.62 -35.89 3.40 -691.90 -2.35 -38.24 16 18 C -0.25 -15.13 10.28 84.03 0.86 -14.26 16 19 H 0.08 4.64 7.83 -2.91 -0.02 4.61 16 20 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 21 N -0.95 -61.01 10.31 21.65 0.22 -60.79 16 22 Si 0.98 48.39 29.55 68.60 2.03 50.42 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 26 C 0.13 6.08 6.61 86.85 0.57 6.65 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.08 7.87 -2.39 -0.02 1.06 16 32 H 0.11 1.36 6.38 -2.39 -0.02 1.35 16 33 H 0.09 1.43 8.05 -2.39 -0.02 1.41 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.14 1.37 8.05 -2.38 -0.02 1.35 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 0.76 7.90 -2.39 -0.02 0.74 16 39 H 0.08 3.04 8.14 -2.38 -0.02 3.02 16 40 H 0.06 2.88 5.92 -2.39 -0.01 2.86 16 41 H 0.02 1.16 7.38 -2.39 -0.02 1.14 16 42 H -0.01 -0.39 7.50 -2.39 -0.02 -0.41 16 43 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 44 H 0.02 1.03 5.87 -2.39 -0.01 1.02 16 45 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -79.80 352.36 4.37 -75.43 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 0.94 Total: 10.73 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 5.59 Total: 7.14 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -4.15 Total: -118.36 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.04 Total: -25.35 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.42 kcal Total: -79.80 4.37 -75.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753318814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.689 kcal (2) G-P(sol) polarization free energy of solvation -79.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds