Wall clock time and date at job start Tue Mar 31 2020 01:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47068 * 2 1 4 4 H 1.09001 * 109.47055 * 304.99571 * 3 2 1 5 5 C 1.52999 * 109.46798 * 185.00236 * 3 2 1 6 6 N 1.46503 * 109.46777 * 184.99937 * 5 3 2 7 7 C 1.34781 * 119.99615 * 180.02562 * 6 5 3 8 8 O 1.21611 * 120.00384 * 359.97438 * 7 6 5 9 9 C 1.47106 * 119.99712 * 180.02562 * 7 6 5 10 10 C 1.32990 * 119.99887 * 186.98258 * 9 7 6 11 11 C 1.51267 * 120.85107 * 12.17173 * 10 9 7 12 12 C 1.53659 * 108.31332 * 128.61666 * 11 10 9 13 13 C 1.52956 * 109.32448 * 54.85949 * 12 11 10 14 14 C 1.52952 * 109.81812 * 296.27021 * 13 12 11 15 15 C 1.51270 * 120.84933 * 192.44748 * 10 9 7 16 16 N 1.46499 * 109.47463 * 65.00101 * 3 2 1 17 17 C 1.36936 * 119.99547 * 275.00225 * 16 3 2 18 18 H 1.08003 * 120.00398 * 359.97438 * 17 16 3 19 19 C 1.38813 * 119.99779 * 180.02562 * 17 16 3 20 20 N 1.31625 * 119.99849 * 359.71842 * 19 17 16 21 21 Si 1.86803 * 120.00212 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47018 * 179.72216 * 21 19 17 23 23 H 1.48500 * 109.46897 * 299.72356 * 21 19 17 24 24 H 1.48497 * 109.47126 * 59.72107 * 21 19 17 25 25 H 1.09005 * 109.46849 * 300.00239 * 1 2 3 26 26 H 1.09000 * 109.46785 * 59.99816 * 1 2 3 27 27 H 1.08996 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46849 * 239.99760 * 2 1 3 29 29 H 1.08995 * 109.47052 * 119.99805 * 2 1 3 30 30 H 1.08996 * 109.47100 * 304.99599 * 5 3 2 31 31 H 1.08991 * 109.47421 * 64.99711 * 5 3 2 32 32 H 0.96998 * 120.00095 * 359.97438 * 6 5 3 33 33 H 1.08003 * 119.99705 * 6.98084 * 9 7 6 34 34 H 1.08999 * 109.62583 * 248.38885 * 11 10 9 35 35 H 1.09000 * 109.62440 * 8.95545 * 11 10 9 36 36 H 1.08999 * 109.62600 * 294.83835 * 12 11 10 37 37 H 1.08999 * 109.42835 * 174.76324 * 12 11 10 38 38 H 1.09005 * 109.41128 * 176.16712 * 13 12 11 39 39 H 1.08999 * 109.41107 * 56.38051 * 13 12 11 40 40 H 1.08994 * 109.48460 * 303.62293 * 14 13 12 41 41 H 1.09000 * 109.48493 * 183.57922 * 14 13 12 42 42 H 1.08997 * 109.62751 * 351.03915 * 15 10 9 43 43 H 1.09003 * 109.62397 * 111.61592 * 15 10 9 44 44 H 0.96993 * 120.00156 * 94.99289 * 16 3 2 45 45 H 0.97001 * 119.99880 * 0.28032 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1258 6 7 4.0631 2.8168 -0.0060 7 6 5.3858 3.0630 -0.0870 8 8 6.1656 2.1458 -0.2589 9 6 5.8861 4.4410 0.0338 10 6 7.1716 4.7032 -0.1836 11 6 8.0778 3.6700 -0.8158 12 6 8.8088 4.3270 -1.9969 13 6 9.5310 5.5840 -1.5093 14 6 8.5101 6.6089 -1.0125 15 6 7.7665 6.0399 0.2006 16 7 1.6526 2.0976 1.2518 17 6 0.4157 2.6735 1.3687 18 1 -0.2739 2.6452 0.5380 19 6 0.0487 3.2947 2.5546 20 7 0.8875 3.3252 3.5685 21 14 -1.6383 4.0810 2.7140 22 1 -1.7852 4.6666 4.0707 23 1 -1.7839 5.1509 1.6945 24 1 -2.6866 3.0506 2.5034 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9954 0.8311 0.6658 31 1 3.8499 1.0376 -1.0960 32 1 3.4410 3.5484 0.1308 33 1 5.2094 5.2399 0.2991 34 1 8.8033 3.3208 -0.0811 35 1 7.4820 2.8304 -1.1736 36 1 8.0881 4.5980 -2.7685 37 1 9.5356 3.6266 -2.4084 38 1 10.1053 6.0134 -2.3303 39 1 10.2061 5.3210 -0.6950 40 1 7.7965 6.8258 -1.8073 41 1 9.0252 7.5257 -0.7259 42 1 6.9706 6.7235 0.4958 43 1 8.4638 5.9061 1.0277 44 1 2.2720 2.1232 1.9977 45 1 1.7636 2.9171 3.4857 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753467274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:27 Heat of formation + Delta-G solvation = -34.688766 kcal Electronic energy + Delta-G solvation = -22154.811362 eV Core-core repulsion = 18978.784508 eV Total energy + Delta-G solvation = -3176.026854 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -39.79208 -38.07464 -36.74622 -33.82212 -32.74167 -32.52966 -31.04579 -29.65742 -28.20355 -26.45315 -23.63026 -23.03631 -22.71033 -21.35920 -20.33980 -19.96705 -18.54085 -17.46673 -16.61055 -15.93375 -15.27732 -14.97058 -14.78229 -14.42971 -14.24272 -13.95162 -13.64287 -13.52031 -13.30609 -13.16378 -12.77746 -12.60485 -12.37569 -12.04569 -11.87269 -11.62293 -11.20321 -11.04293 -10.98458 -10.82204 -10.79541 -10.49631 -10.40093 -10.34905 -10.11729 -9.88972 -9.24847 -9.21115 -8.97623 -8.87938 -8.53699 -7.10594 -6.12994 -3.14404 1.48101 3.48626 3.50839 3.53568 3.63438 3.68892 4.59916 4.62027 4.63827 4.76617 4.93704 5.06112 5.23036 5.29556 5.34273 5.38333 5.43931 5.47713 5.52549 5.53991 5.73251 5.82894 5.85134 5.87254 5.90384 5.90716 5.92956 5.97056 6.09510 6.17974 6.26750 6.32590 6.48259 6.52113 6.55258 6.57959 6.72987 6.91864 6.98797 7.20984 7.77354 7.96447 8.60243 8.70993 9.16226 10.03057 10.18255 11.34097 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019812 B = 0.003758 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.981064 B = 7449.104644 C = 8527.280266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.169 3.831 4 H 0.054 0.946 5 C 0.114 3.886 6 N -0.709 5.709 7 C 0.544 3.456 8 O -0.553 6.553 9 C -0.224 4.224 10 C -0.030 4.030 11 C -0.120 4.120 12 C -0.117 4.117 13 C -0.123 4.123 14 C -0.117 4.117 15 C -0.093 4.093 16 N -0.733 5.733 17 C -0.328 4.328 18 H 0.067 0.933 19 C -0.043 4.043 20 N -0.942 5.942 21 Si 1.076 2.924 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.296 1.296 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.410 0.590 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.122 0.878 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.368 0.632 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.987 3.455 -10.299 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.058 3.942 4 H 0.072 0.928 5 C -0.011 4.011 6 N -0.359 5.359 7 C 0.334 3.666 8 O -0.436 6.436 9 C -0.244 4.244 10 C -0.032 4.032 11 C -0.156 4.156 12 C -0.154 4.154 13 C -0.160 4.160 14 C -0.154 4.154 15 C -0.130 4.130 16 N -0.376 5.376 17 C -0.459 4.459 18 H 0.085 0.915 19 C -0.241 4.241 20 N -0.587 5.587 21 Si 0.907 3.093 22 H -0.211 1.211 23 H -0.223 1.223 24 H -0.223 1.223 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.246 0.754 33 H 0.144 0.856 34 H 0.091 0.909 35 H 0.140 0.860 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.201 0.799 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.303 3.655 -9.556 16.001 hybrid contribution 0.732 -0.486 -0.677 1.109 sum 13.035 3.169 -10.233 16.872 Atomic orbital electron populations 1.21766 0.95595 0.99596 1.03349 1.22059 0.97104 0.98302 0.99937 1.20498 0.89904 0.92713 0.91040 0.92793 1.21669 0.95545 0.82850 1.01053 1.45941 1.07143 1.10629 1.72181 1.18551 0.82253 0.89321 0.76523 1.90564 1.55262 1.46749 1.51016 1.22396 0.96487 0.96065 1.09487 1.22621 0.93818 0.95899 0.90829 1.21661 0.98558 0.98475 0.96931 1.21674 0.99127 0.96706 0.97912 1.21562 0.97841 0.95946 1.00687 1.21568 0.98154 0.98120 0.97566 1.20959 1.00154 0.93675 0.98224 1.42460 1.16801 1.67042 1.11308 1.19999 0.92626 1.32314 1.00961 0.91480 1.25701 1.05685 1.00428 0.92293 1.70885 1.08445 1.47418 1.31929 0.83294 0.74357 0.75878 0.75782 1.21142 1.22322 1.22297 0.89619 0.94103 0.94876 0.93788 0.92721 0.92004 0.91830 0.75390 0.85592 0.90907 0.86036 0.92123 0.91780 0.92163 0.91933 0.91753 0.91692 0.90725 0.89919 0.79866 0.93329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.18 37.16 0.34 -2.32 16 2 C -0.13 -2.35 5.61 -26.73 -0.15 -2.50 16 3 C 0.17 3.18 2.59 -67.93 -0.18 3.00 16 4 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 5 C 0.11 1.96 5.23 -4.04 -0.02 1.94 16 6 N -0.71 -12.08 5.38 -61.49 -0.33 -12.42 16 7 C 0.54 9.22 7.62 -12.66 -0.10 9.12 16 8 O -0.55 -10.46 13.22 5.27 0.07 -10.39 16 9 C -0.22 -3.19 9.65 -37.81 -0.37 -3.55 16 10 C -0.03 -0.37 5.38 -100.61 -0.54 -0.92 16 11 C -0.12 -1.52 5.32 -27.26 -0.15 -1.67 16 12 C -0.12 -1.18 5.95 -26.41 -0.16 -1.34 16 13 C -0.12 -1.05 5.80 -26.78 -0.16 -1.21 16 14 C -0.12 -1.00 5.94 -26.63 -0.16 -1.16 16 15 C -0.09 -0.92 6.04 -27.48 -0.17 -1.09 16 16 N -0.73 -16.79 4.51 -53.42 -0.24 -17.03 16 17 C -0.33 -8.45 7.75 -15.06 -0.12 -8.57 16 18 H 0.07 1.71 7.32 -52.48 -0.38 1.33 16 19 C -0.04 -1.18 5.50 -17.43 -0.10 -1.28 16 20 N -0.94 -27.94 13.70 55.49 0.76 -27.18 16 21 Si 1.08 24.94 29.92 -169.99 -5.09 19.85 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.30 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.30 -6.60 7.11 56.52 0.40 -6.19 16 25 H 0.08 1.86 5.99 -51.93 -0.31 1.55 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.41 7.12 8.12 -40.82 -0.33 6.79 16 33 H 0.13 1.63 7.96 -52.48 -0.42 1.22 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.12 1.87 4.79 -52.86 -0.25 1.62 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.70 7.92 -51.93 -0.41 0.29 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.37 9.01 6.63 -40.82 -0.27 8.74 16 45 H 0.26 7.52 6.77 -40.82 -0.28 7.24 16 LS Contribution 353.19 15.07 5.32 5.32 Total: -1.00 -29.38 353.19 -9.30 -38.68 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -7.79 Total: 14.68 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -2.00 Total: -11.51 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.19 Total: -56.62 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.07 Total: -10.39 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.09 Total: 19.85 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.38 -9.30 -38.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753467274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.987 kcal (2) G-P(sol) polarization free energy of solvation -29.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds