Wall clock time and date at job start Tue Mar 31 2020 01:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47068 * 2 1 4 4 H 1.09001 * 109.47055 * 304.99571 * 3 2 1 5 5 C 1.52999 * 109.46798 * 185.00236 * 3 2 1 6 6 N 1.46503 * 109.46777 * 184.99937 * 5 3 2 7 7 C 1.34781 * 119.99615 * 180.02562 * 6 5 3 8 8 O 1.21611 * 120.00384 * 359.97438 * 7 6 5 9 9 C 1.47106 * 119.99712 * 180.02562 * 7 6 5 10 10 C 1.32990 * 119.99887 * 186.98258 * 9 7 6 11 11 C 1.51267 * 120.85107 * 12.17173 * 10 9 7 12 12 C 1.53659 * 108.31332 * 128.61666 * 11 10 9 13 13 C 1.52956 * 109.32448 * 54.85949 * 12 11 10 14 14 C 1.52952 * 109.81812 * 296.27021 * 13 12 11 15 15 C 1.51270 * 120.84933 * 192.44748 * 10 9 7 16 16 N 1.46499 * 109.47463 * 65.00101 * 3 2 1 17 17 C 1.36936 * 119.99547 * 275.00225 * 16 3 2 18 18 H 1.08003 * 120.00398 * 359.97438 * 17 16 3 19 19 C 1.38813 * 119.99779 * 180.02562 * 17 16 3 20 20 N 1.31625 * 119.99849 * 359.71842 * 19 17 16 21 21 Si 1.86803 * 120.00212 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47018 * 179.72216 * 21 19 17 23 23 H 1.48500 * 109.46897 * 299.72356 * 21 19 17 24 24 H 1.48497 * 109.47126 * 59.72107 * 21 19 17 25 25 H 1.09005 * 109.46849 * 300.00239 * 1 2 3 26 26 H 1.09000 * 109.46785 * 59.99816 * 1 2 3 27 27 H 1.08996 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46849 * 239.99760 * 2 1 3 29 29 H 1.08995 * 109.47052 * 119.99805 * 2 1 3 30 30 H 1.08996 * 109.47100 * 304.99599 * 5 3 2 31 31 H 1.08991 * 109.47421 * 64.99711 * 5 3 2 32 32 H 0.96998 * 120.00095 * 359.97438 * 6 5 3 33 33 H 1.08003 * 119.99705 * 6.98084 * 9 7 6 34 34 H 1.08999 * 109.62583 * 248.38885 * 11 10 9 35 35 H 1.09000 * 109.62440 * 8.95545 * 11 10 9 36 36 H 1.08999 * 109.62600 * 294.83835 * 12 11 10 37 37 H 1.08999 * 109.42835 * 174.76324 * 12 11 10 38 38 H 1.09005 * 109.41128 * 176.16712 * 13 12 11 39 39 H 1.08999 * 109.41107 * 56.38051 * 13 12 11 40 40 H 1.08994 * 109.48460 * 303.62293 * 14 13 12 41 41 H 1.09000 * 109.48493 * 183.57922 * 14 13 12 42 42 H 1.08997 * 109.62751 * 351.03915 * 15 10 9 43 43 H 1.09003 * 109.62397 * 111.61592 * 15 10 9 44 44 H 0.96993 * 120.00156 * 94.99289 * 16 3 2 45 45 H 0.97001 * 119.99880 * 0.28032 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1258 6 7 4.0631 2.8168 -0.0060 7 6 5.3858 3.0630 -0.0870 8 8 6.1656 2.1458 -0.2589 9 6 5.8861 4.4410 0.0338 10 6 7.1716 4.7032 -0.1836 11 6 8.0778 3.6700 -0.8158 12 6 8.8088 4.3270 -1.9969 13 6 9.5310 5.5840 -1.5093 14 6 8.5101 6.6089 -1.0125 15 6 7.7665 6.0399 0.2006 16 7 1.6526 2.0976 1.2518 17 6 0.4157 2.6735 1.3687 18 1 -0.2739 2.6452 0.5380 19 6 0.0487 3.2947 2.5546 20 7 0.8875 3.3252 3.5685 21 14 -1.6383 4.0810 2.7140 22 1 -1.7852 4.6666 4.0707 23 1 -1.7839 5.1509 1.6945 24 1 -2.6866 3.0506 2.5034 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9954 0.8311 0.6658 31 1 3.8499 1.0376 -1.0960 32 1 3.4410 3.5484 0.1308 33 1 5.2094 5.2399 0.2991 34 1 8.8033 3.3208 -0.0811 35 1 7.4820 2.8304 -1.1736 36 1 8.0881 4.5980 -2.7685 37 1 9.5356 3.6266 -2.4084 38 1 10.1053 6.0134 -2.3303 39 1 10.2061 5.3210 -0.6950 40 1 7.7965 6.8258 -1.8073 41 1 9.0252 7.5257 -0.7259 42 1 6.9706 6.7235 0.4958 43 1 8.4638 5.9061 1.0277 44 1 2.2720 2.1232 1.9977 45 1 1.7636 2.9171 3.4857 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753467274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:26 Heat of formation + Delta-G solvation = -51.793111 kcal Electronic energy + Delta-G solvation = -22155.553062 eV Core-core repulsion = 18978.784508 eV Total energy + Delta-G solvation = -3176.768554 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.05440 -39.14091 -38.25573 -35.42213 -34.33437 -33.63604 -31.88443 -31.36870 -29.71425 -27.61131 -25.46114 -24.26653 -23.83209 -22.39426 -21.79285 -21.17544 -19.68401 -19.36401 -17.88594 -17.19999 -16.77653 -16.27590 -16.12384 -15.73996 -15.45933 -15.24145 -15.11154 -14.70407 -14.47328 -14.46975 -14.12756 -13.66511 -13.52362 -13.28083 -13.18781 -12.80244 -12.73217 -12.57390 -12.11562 -12.02935 -11.98869 -11.84568 -11.80048 -11.63300 -11.54847 -11.20185 -11.18653 -10.89732 -10.47625 -10.04525 -9.82514 -9.07884 -8.27547 -5.22788 0.36235 1.61747 1.70081 1.85711 2.25115 2.33645 2.75289 3.48382 3.67583 3.74222 3.77007 3.85097 4.02523 4.05184 4.19203 4.26837 4.31698 4.38954 4.44757 4.47588 4.48689 4.62069 4.65897 4.76504 4.78222 4.98067 4.99709 5.00926 5.04905 5.12830 5.13867 5.16487 5.17100 5.30656 5.42282 5.43693 5.52798 5.60281 5.64469 5.71837 5.72914 6.57405 6.60029 7.14320 7.25971 8.04647 8.17627 9.22839 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019812 B = 0.003758 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.981064 B = 7449.104644 C = 8527.280266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.171 3.829 4 H 0.055 0.945 5 C 0.123 3.877 6 N -0.711 5.711 7 C 0.539 3.461 8 O -0.578 6.578 9 C -0.251 4.251 10 C -0.013 4.013 11 C -0.123 4.123 12 C -0.113 4.113 13 C -0.121 4.121 14 C -0.114 4.114 15 C -0.094 4.094 16 N -0.739 5.739 17 C -0.307 4.307 18 H 0.071 0.929 19 C -0.104 4.104 20 N -0.979 5.979 21 Si 1.119 2.881 22 H -0.300 1.300 23 H -0.278 1.278 24 H -0.282 1.282 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.408 0.592 33 H 0.136 0.864 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.358 0.642 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.629 4.230 -11.923 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.170 4.170 3 C 0.062 3.938 4 H 0.073 0.927 5 C -0.002 4.002 6 N -0.361 5.361 7 C 0.331 3.669 8 O -0.463 6.463 9 C -0.271 4.271 10 C -0.015 4.015 11 C -0.160 4.160 12 C -0.150 4.150 13 C -0.158 4.158 14 C -0.151 4.151 15 C -0.131 4.131 16 N -0.382 5.382 17 C -0.438 4.438 18 H 0.089 0.911 19 C -0.295 4.295 20 N -0.628 5.628 21 Si 0.946 3.054 22 H -0.227 1.227 23 H -0.204 1.204 24 H -0.209 1.209 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.244 0.756 33 H 0.154 0.846 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.190 0.810 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.948 4.408 -11.240 17.703 hybrid contribution 0.626 -0.809 -0.273 1.059 sum 13.574 3.599 -11.513 18.159 Atomic orbital electron populations 1.21686 0.95823 1.00614 1.01772 1.21986 0.96788 0.97217 1.00998 1.20632 0.90902 0.93191 0.89064 0.92689 1.21541 0.94231 0.83107 1.01315 1.45955 1.07357 1.10334 1.72432 1.19013 0.81853 0.90308 0.75776 1.90566 1.55655 1.47789 1.52244 1.22372 0.97549 0.94894 1.12324 1.23002 0.93156 0.97107 0.88197 1.21610 0.98428 0.97979 0.97965 1.21653 0.99111 0.97697 0.96573 1.21566 0.97814 0.94980 1.01464 1.21581 0.98062 0.98833 0.96662 1.21070 1.00668 0.92048 0.99306 1.42583 1.15853 1.67354 1.12384 1.20245 0.93195 1.29984 1.00387 0.91062 1.26883 1.08154 1.01943 0.92541 1.70995 1.08605 1.49931 1.33289 0.82708 0.71510 0.75864 0.75318 1.22687 1.20389 1.20872 0.93399 0.93237 0.92696 0.90554 0.93756 0.93314 0.90304 0.75647 0.84596 0.90893 0.88835 0.92519 0.90920 0.90442 0.91448 0.91993 0.89608 0.90042 0.88806 0.81021 0.94723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 9.18 71.98 0.66 -4.28 16 2 C -0.13 -4.37 5.61 30.60 0.17 -4.20 16 3 C 0.17 6.32 2.59 44.99 0.12 6.44 16 4 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 5 C 0.12 4.23 5.23 86.38 0.45 4.68 16 6 N -0.71 -24.58 5.38 -466.71 -2.51 -27.09 16 7 C 0.54 18.62 7.62 86.57 0.66 19.28 16 8 O -0.58 -22.35 13.22 -4.07 -0.05 -22.40 16 9 C -0.25 -7.16 9.65 23.43 0.23 -6.93 16 10 C -0.01 -0.31 5.38 -17.25 -0.09 -0.40 16 11 C -0.12 -3.07 5.32 30.25 0.16 -2.91 16 12 C -0.11 -2.11 5.95 30.80 0.18 -1.92 16 13 C -0.12 -1.73 5.80 30.56 0.18 -1.55 16 14 C -0.11 -1.62 5.94 30.66 0.18 -1.44 16 15 C -0.09 -1.67 6.04 30.11 0.18 -1.48 16 16 N -0.74 -34.23 4.51 -322.94 -1.45 -35.68 16 17 C -0.31 -15.80 7.75 84.03 0.65 -15.15 16 18 H 0.07 3.58 7.32 -2.91 -0.02 3.55 16 19 C -0.10 -5.74 5.50 84.86 0.47 -5.28 16 20 N -0.98 -59.52 13.70 21.65 0.30 -59.22 16 21 Si 1.12 50.42 29.92 68.60 2.05 52.48 16 22 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 23 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 25 H 0.05 2.03 5.99 -2.38 -0.01 2.02 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 28 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.41 14.41 8.12 -92.71 -0.75 13.65 16 33 H 0.14 3.52 7.96 -2.91 -0.02 3.50 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 2.94 4.79 -17.15 -0.08 2.85 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 1.36 7.92 -2.39 -0.02 1.34 16 43 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.36 18.05 6.63 -92.71 -0.61 17.44 16 45 H 0.24 14.79 6.77 -92.71 -0.63 14.17 16 Total: -1.00 -63.96 353.19 2.20 -61.76 By element: Atomic # 1 Polarization: 45.64 SS G_CDS: -0.33 Total: 45.31 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 4.20 Total: -15.15 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -3.67 Total: -122.00 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.05 Total: -22.40 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 2.05 Total: 52.48 kcal Total: -63.96 2.20 -61.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753467274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.971 kcal (2) G-P(sol) polarization free energy of solvation -63.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds