Wall clock time and date at job start Tue Mar 31 2020 01:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46911 * 2 1 4 4 H 1.09000 * 109.47572 * 54.99798 * 3 2 1 5 5 C 1.53002 * 109.47366 * 174.99999 * 3 2 1 6 6 N 1.46501 * 109.47568 * 174.99958 * 5 3 2 7 7 C 1.34771 * 120.00003 * 180.02562 * 6 5 3 8 8 O 1.21619 * 120.00179 * 359.97438 * 7 6 5 9 9 C 1.47093 * 120.00099 * 180.02562 * 7 6 5 10 10 C 1.32998 * 120.00397 * 186.98459 * 9 7 6 11 11 C 1.51268 * 120.84756 * 12.16875 * 10 9 7 12 12 C 1.53662 * 108.30913 * 128.61670 * 11 10 9 13 13 C 1.52958 * 109.32498 * 54.86437 * 12 11 10 14 14 C 1.52958 * 109.81690 * 296.26830 * 13 12 11 15 15 C 1.51268 * 120.85045 * 192.44847 * 10 9 7 16 16 N 1.46504 * 109.47245 * 294.99665 * 3 2 1 17 17 C 1.36933 * 119.99657 * 85.00179 * 16 3 2 18 18 H 1.08002 * 120.00125 * 0.02562 * 17 16 3 19 19 C 1.38815 * 119.99981 * 179.72496 * 17 16 3 20 20 N 1.31623 * 119.99570 * 0.27787 * 19 17 16 21 21 Si 1.86792 * 120.00310 * 180.27437 * 19 17 16 22 22 H 1.48502 * 109.47202 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47383 * 120.00109 * 21 19 17 24 24 H 1.48498 * 109.47297 * 240.00160 * 21 19 17 25 25 H 1.09001 * 109.46731 * 60.00548 * 1 2 3 26 26 H 1.09002 * 109.46693 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47029 * 300.00365 * 1 2 3 28 28 H 1.09004 * 109.47137 * 239.99972 * 2 1 3 29 29 H 1.08994 * 109.47104 * 119.99600 * 2 1 3 30 30 H 1.09004 * 109.46750 * 295.00441 * 5 3 2 31 31 H 1.09002 * 109.47021 * 54.99427 * 5 3 2 32 32 H 0.96993 * 119.99346 * 359.97438 * 6 5 3 33 33 H 1.08008 * 120.00110 * 6.98175 * 9 7 6 34 34 H 1.08996 * 109.62580 * 248.39229 * 11 10 9 35 35 H 1.09005 * 109.62725 * 8.96409 * 11 10 9 36 36 H 1.08999 * 109.63389 * 294.84089 * 12 11 10 37 37 H 1.09002 * 109.42831 * 174.75773 * 12 11 10 38 38 H 1.09000 * 109.41506 * 176.16811 * 13 12 11 39 39 H 1.08995 * 109.41412 * 56.37021 * 13 12 11 40 40 H 1.09006 * 109.48432 * 303.62063 * 14 13 12 41 41 H 1.08998 * 109.48708 * 183.57910 * 14 13 12 42 42 H 1.09001 * 109.62628 * 351.03790 * 15 10 9 43 43 H 1.09000 * 109.62508 * 111.61324 * 15 10 9 44 44 H 0.97003 * 119.99975 * 264.99836 * 16 3 2 45 45 H 0.97005 * 119.99933 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 7 4.0630 2.8169 0.0059 7 6 5.3857 3.0630 0.0858 8 8 6.1656 2.1458 0.2578 9 6 5.8859 4.4411 -0.0339 10 6 7.1945 4.6707 -0.0947 11 6 8.1713 3.5374 -0.3173 12 6 9.0961 3.9192 -1.4836 13 6 9.7536 5.2681 -1.1875 14 6 8.6853 6.3601 -1.1114 15 6 7.7445 6.0710 0.0631 16 7 1.6525 2.0975 -1.2519 17 6 0.4157 2.6734 -1.3688 18 1 -0.2739 2.6452 -0.5381 19 6 0.0506 3.2990 -2.5530 20 7 0.8912 3.3338 -3.5652 21 14 -1.6337 4.0914 -2.7100 22 1 -2.3835 3.9163 -1.4402 23 1 -1.4746 5.5402 -2.9945 24 1 -2.3818 3.4483 -3.8199 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8499 1.0377 1.0961 31 1 3.9954 0.8311 -0.6659 32 1 3.4410 3.5483 -0.1316 33 1 5.1905 5.2666 -0.0724 34 1 8.7615 3.3802 0.5855 35 1 7.6255 2.6267 -0.5644 36 1 8.5152 3.9919 -2.4029 37 1 9.8666 3.1570 -1.5998 38 1 10.4612 5.5083 -1.9811 39 1 10.2828 5.2122 -0.2363 40 1 8.1140 6.3751 -2.0396 41 1 9.1645 7.3279 -0.9636 42 1 6.9244 6.7889 0.0606 43 1 8.2960 6.1442 1.0005 44 1 2.2720 2.1232 -1.9978 45 1 0.6363 3.7713 -4.3926 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753467275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:31 Heat of formation + Delta-G solvation = -35.323772 kcal Electronic energy + Delta-G solvation = -22160.977155 eV Core-core repulsion = 18984.922765 eV Total energy + Delta-G solvation = -3176.054390 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -39.71027 -37.99388 -36.60997 -33.66315 -32.64403 -32.33374 -30.97779 -29.77378 -28.30542 -26.45230 -23.76093 -22.97584 -22.64003 -21.28462 -20.21122 -19.86305 -18.48586 -17.26260 -16.46992 -15.81912 -15.30756 -14.99420 -14.49357 -14.38130 -14.21864 -13.95426 -13.56556 -13.32008 -13.13567 -13.02439 -12.65910 -12.55466 -12.29205 -12.09160 -11.86370 -11.42571 -11.13423 -10.97816 -10.95292 -10.90044 -10.79195 -10.60844 -10.41133 -10.33421 -10.18675 -9.98420 -9.54480 -9.17026 -8.97397 -8.81227 -8.44289 -7.03402 -5.81956 -3.11023 1.54770 3.38688 3.45311 3.47221 3.60650 3.73204 4.53843 4.66321 4.69545 4.83217 5.00897 5.13164 5.29809 5.35600 5.42766 5.44633 5.51075 5.53981 5.57503 5.58772 5.77160 5.88732 5.93838 5.94930 5.96992 5.98866 6.00274 6.03362 6.17825 6.26835 6.34139 6.44141 6.55827 6.58813 6.61052 6.63842 6.80828 7.00407 7.07379 7.24527 7.66477 8.05841 8.35430 8.68996 9.47411 10.02888 10.38850 11.40018 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.003934 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.597822 B = 7115.647767 C = 8203.238082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.115 3.885 6 N -0.707 5.707 7 C 0.543 3.457 8 O -0.555 6.555 9 C -0.222 4.222 10 C -0.031 4.031 11 C -0.119 4.119 12 C -0.118 4.118 13 C -0.122 4.122 14 C -0.118 4.118 15 C -0.092 4.092 16 N -0.721 5.721 17 C -0.237 4.237 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.084 0.916 26 H 0.032 0.968 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.410 0.590 33 H 0.126 0.874 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.385 0.615 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.375 3.122 7.316 15.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.010 4.010 6 N -0.357 5.357 7 C 0.333 3.667 8 O -0.438 6.438 9 C -0.242 4.242 10 C -0.033 4.033 11 C -0.155 4.155 12 C -0.156 4.156 13 C -0.160 4.160 14 C -0.155 4.155 15 C -0.129 4.129 16 N -0.364 5.364 17 C -0.368 4.368 18 H 0.091 0.909 19 C -0.208 4.208 20 N -0.577 5.577 21 Si 0.733 3.267 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.219 1.219 25 H 0.103 0.897 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.247 0.753 33 H 0.144 0.856 34 H 0.089 0.911 35 H 0.140 0.860 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.219 0.781 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.699 2.549 7.457 15.804 hybrid contribution -1.205 0.883 -0.547 1.591 sum 12.494 3.433 6.910 14.684 Atomic orbital electron populations 1.21772 0.95760 0.99608 1.03233 1.22067 0.96937 0.98450 0.99999 1.20565 0.90050 0.92756 0.91372 0.92912 1.21650 0.95527 0.82848 1.00964 1.45919 1.07179 1.10681 1.71887 1.18534 0.82348 0.89085 0.76722 1.90562 1.55070 1.46836 1.51288 1.22392 0.96035 0.96187 1.09627 1.22610 0.94081 0.96263 0.90394 1.21652 0.96600 0.99112 0.98148 1.21685 0.98579 0.96562 0.98734 1.21555 0.97635 0.95218 1.01548 1.21578 0.96970 0.98440 0.98537 1.20941 0.99481 0.93344 0.99111 1.42466 1.16749 1.65851 1.11310 1.19258 0.91968 1.27459 0.98067 0.90862 1.24732 0.98045 1.01575 0.96425 1.69677 1.35152 1.48840 1.04069 0.86196 0.84106 0.78910 0.77448 1.20553 1.21956 1.21940 0.89680 0.94890 0.94139 0.92541 0.93866 0.91961 0.91915 0.75312 0.85610 0.91062 0.85964 0.91921 0.91790 0.92170 0.92047 0.91586 0.91771 0.90828 0.90097 0.78079 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.18 37.16 0.34 -2.28 16 2 C -0.13 -2.32 5.61 -26.73 -0.15 -2.47 16 3 C 0.16 3.03 2.59 -67.93 -0.18 2.86 16 4 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 5 C 0.11 1.98 5.23 -4.04 -0.02 1.96 16 6 N -0.71 -12.09 5.38 -61.49 -0.33 -12.42 16 7 C 0.54 9.27 7.62 -12.67 -0.10 9.17 16 8 O -0.55 -10.54 13.22 5.26 0.07 -10.47 16 9 C -0.22 -3.18 9.65 -37.81 -0.37 -3.54 16 10 C -0.03 -0.40 5.38 -100.61 -0.54 -0.95 16 11 C -0.12 -1.56 5.32 -27.26 -0.14 -1.71 16 12 C -0.12 -1.30 5.95 -26.41 -0.16 -1.46 16 13 C -0.12 -1.12 5.81 -26.77 -0.16 -1.27 16 14 C -0.12 -1.08 5.94 -26.63 -0.16 -1.23 16 15 C -0.09 -0.91 6.04 -27.48 -0.17 -1.08 16 16 N -0.72 -16.51 4.51 -53.42 -0.24 -16.75 16 17 C -0.24 -6.00 7.75 -15.06 -0.12 -6.12 16 18 H 0.07 1.83 7.32 -52.49 -0.38 1.44 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -26.81 13.06 55.49 0.72 -26.09 16 21 Si 0.90 21.47 29.55 -169.99 -5.02 16.45 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H 0.08 1.80 5.99 -51.93 -0.31 1.48 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.41 7.12 8.12 -40.82 -0.33 6.79 16 33 H 0.13 1.61 7.96 -52.48 -0.42 1.19 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.12 1.97 4.79 -52.86 -0.25 1.72 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.68 7.92 -51.93 -0.41 0.27 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.39 9.69 7.80 -40.82 -0.32 9.37 16 45 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 354.90 15.07 5.35 5.35 Total: -1.00 -28.53 354.90 -9.36 -37.89 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -7.90 Total: 14.57 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -2.00 Total: -8.53 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.15 Total: -55.25 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.07 Total: -10.47 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.53 -9.36 -37.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753467275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.563 kcal (2) G-P(sol) polarization free energy of solvation -28.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds