Wall clock time and date at job start Tue Mar 31 2020 01:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46911 * 2 1 4 4 H 1.09000 * 109.47572 * 54.99798 * 3 2 1 5 5 C 1.53002 * 109.47366 * 174.99999 * 3 2 1 6 6 N 1.46501 * 109.47568 * 174.99958 * 5 3 2 7 7 C 1.34771 * 120.00003 * 180.02562 * 6 5 3 8 8 O 1.21619 * 120.00179 * 359.97438 * 7 6 5 9 9 C 1.47093 * 120.00099 * 180.02562 * 7 6 5 10 10 C 1.32998 * 120.00397 * 186.98459 * 9 7 6 11 11 C 1.51268 * 120.84756 * 12.16875 * 10 9 7 12 12 C 1.53662 * 108.30913 * 128.61670 * 11 10 9 13 13 C 1.52958 * 109.32498 * 54.86437 * 12 11 10 14 14 C 1.52958 * 109.81690 * 296.26830 * 13 12 11 15 15 C 1.51268 * 120.85045 * 192.44847 * 10 9 7 16 16 N 1.46504 * 109.47245 * 294.99665 * 3 2 1 17 17 C 1.36933 * 119.99657 * 85.00179 * 16 3 2 18 18 H 1.08002 * 120.00125 * 0.02562 * 17 16 3 19 19 C 1.38815 * 119.99981 * 179.72496 * 17 16 3 20 20 N 1.31623 * 119.99570 * 0.27787 * 19 17 16 21 21 Si 1.86792 * 120.00310 * 180.27437 * 19 17 16 22 22 H 1.48502 * 109.47202 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47383 * 120.00109 * 21 19 17 24 24 H 1.48498 * 109.47297 * 240.00160 * 21 19 17 25 25 H 1.09001 * 109.46731 * 60.00548 * 1 2 3 26 26 H 1.09002 * 109.46693 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47029 * 300.00365 * 1 2 3 28 28 H 1.09004 * 109.47137 * 239.99972 * 2 1 3 29 29 H 1.08994 * 109.47104 * 119.99600 * 2 1 3 30 30 H 1.09004 * 109.46750 * 295.00441 * 5 3 2 31 31 H 1.09002 * 109.47021 * 54.99427 * 5 3 2 32 32 H 0.96993 * 119.99346 * 359.97438 * 6 5 3 33 33 H 1.08008 * 120.00110 * 6.98175 * 9 7 6 34 34 H 1.08996 * 109.62580 * 248.39229 * 11 10 9 35 35 H 1.09005 * 109.62725 * 8.96409 * 11 10 9 36 36 H 1.08999 * 109.63389 * 294.84089 * 12 11 10 37 37 H 1.09002 * 109.42831 * 174.75773 * 12 11 10 38 38 H 1.09000 * 109.41506 * 176.16811 * 13 12 11 39 39 H 1.08995 * 109.41412 * 56.37021 * 13 12 11 40 40 H 1.09006 * 109.48432 * 303.62063 * 14 13 12 41 41 H 1.08998 * 109.48708 * 183.57910 * 14 13 12 42 42 H 1.09001 * 109.62628 * 351.03790 * 15 10 9 43 43 H 1.09000 * 109.62508 * 111.61324 * 15 10 9 44 44 H 0.97003 * 119.99975 * 264.99836 * 16 3 2 45 45 H 0.97005 * 119.99933 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 7 4.0630 2.8169 0.0059 7 6 5.3857 3.0630 0.0858 8 8 6.1656 2.1458 0.2578 9 6 5.8859 4.4411 -0.0339 10 6 7.1945 4.6707 -0.0947 11 6 8.1713 3.5374 -0.3173 12 6 9.0961 3.9192 -1.4836 13 6 9.7536 5.2681 -1.1875 14 6 8.6853 6.3601 -1.1114 15 6 7.7445 6.0710 0.0631 16 7 1.6525 2.0975 -1.2519 17 6 0.4157 2.6734 -1.3688 18 1 -0.2739 2.6452 -0.5381 19 6 0.0506 3.2990 -2.5530 20 7 0.8912 3.3338 -3.5652 21 14 -1.6337 4.0914 -2.7100 22 1 -2.3835 3.9163 -1.4402 23 1 -1.4746 5.5402 -2.9945 24 1 -2.3818 3.4483 -3.8199 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8499 1.0377 1.0961 31 1 3.9954 0.8311 -0.6659 32 1 3.4410 3.5483 -0.1316 33 1 5.1905 5.2666 -0.0724 34 1 8.7615 3.3802 0.5855 35 1 7.6255 2.6267 -0.5644 36 1 8.5152 3.9919 -2.4029 37 1 9.8666 3.1570 -1.5998 38 1 10.4612 5.5083 -1.9811 39 1 10.2828 5.2122 -0.2363 40 1 8.1140 6.3751 -2.0396 41 1 9.1645 7.3279 -0.9636 42 1 6.9244 6.7889 0.0606 43 1 8.2960 6.1442 1.0005 44 1 2.2720 2.1232 -1.9978 45 1 0.6363 3.7713 -4.3926 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753467275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:30 Heat of formation + Delta-G solvation = -51.806907 kcal Electronic energy + Delta-G solvation = -22161.691918 eV Core-core repulsion = 18984.922765 eV Total energy + Delta-G solvation = -3176.769153 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.97421 -39.06491 -38.11341 -35.21447 -34.14489 -33.58897 -31.85309 -31.50741 -29.78758 -27.61010 -25.55070 -24.16033 -23.80169 -22.34017 -21.63449 -21.11409 -19.66118 -19.08364 -17.76682 -17.11670 -16.83613 -16.27252 -15.86961 -15.62951 -15.46872 -15.15448 -14.92165 -14.58168 -14.46125 -14.38049 -14.03268 -13.71984 -13.52459 -13.23617 -12.97214 -12.82686 -12.77615 -12.73568 -12.34594 -12.06867 -11.98663 -11.88576 -11.78132 -11.62703 -11.58563 -11.33459 -11.17488 -10.91194 -10.41643 -9.97894 -9.74338 -8.97475 -7.87536 -5.14737 0.42526 1.49344 1.51482 1.59403 2.32178 2.43735 2.60257 3.46511 3.74405 3.80721 3.90399 3.96856 4.05869 4.08495 4.22887 4.35817 4.39068 4.48089 4.48458 4.51747 4.57157 4.64985 4.75255 4.81330 4.88120 5.00494 5.03935 5.10083 5.13522 5.15667 5.17985 5.19927 5.21391 5.34803 5.45752 5.51580 5.59230 5.61385 5.67076 5.72514 5.78449 6.32797 6.69615 7.34472 7.40480 8.12266 8.37400 9.35769 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.003934 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.597822 B = 7115.647767 C = 8203.238082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.165 3.835 4 H 0.058 0.942 5 C 0.123 3.877 6 N -0.709 5.709 7 C 0.538 3.462 8 O -0.580 6.580 9 C -0.248 4.248 10 C -0.017 4.017 11 C -0.122 4.122 12 C -0.116 4.116 13 C -0.119 4.119 14 C -0.117 4.117 15 C -0.091 4.091 16 N -0.728 5.728 17 C -0.215 4.215 18 H 0.081 0.919 19 C -0.073 4.073 20 N -0.969 5.969 21 Si 0.960 3.040 22 H -0.266 1.266 23 H -0.298 1.298 24 H -0.302 1.302 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.409 0.591 33 H 0.139 0.861 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.372 0.628 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.118 3.911 8.955 17.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.056 3.944 4 H 0.076 0.924 5 C -0.001 4.001 6 N -0.359 5.359 7 C 0.329 3.671 8 O -0.464 6.464 9 C -0.269 4.269 10 C -0.019 4.019 11 C -0.158 4.158 12 C -0.154 4.154 13 C -0.156 4.156 14 C -0.154 4.154 15 C -0.127 4.127 16 N -0.368 5.368 17 C -0.347 4.347 18 H 0.098 0.902 19 C -0.265 4.265 20 N -0.621 5.621 21 Si 0.791 3.209 22 H -0.190 1.190 23 H -0.226 1.226 24 H -0.230 1.230 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.245 0.755 33 H 0.157 0.843 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.117 0.883 44 H 0.204 0.796 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.431 3.321 9.151 17.407 hybrid contribution -1.341 0.548 -0.974 1.745 sum 13.090 3.868 8.177 15.911 Atomic orbital electron populations 1.21699 0.95891 1.00622 1.01803 1.21988 0.96704 0.97329 1.00997 1.20708 0.90925 0.93280 0.89444 0.92417 1.21533 0.94359 0.83057 1.01183 1.45939 1.07384 1.10429 1.72120 1.19014 0.81973 0.90067 0.76030 1.90564 1.55469 1.47897 1.52508 1.22399 0.97023 0.94972 1.12483 1.22993 0.93508 0.97927 0.87449 1.21585 0.96919 0.98057 0.99272 1.21672 0.98273 0.98369 0.97071 1.21552 0.97758 0.93680 1.02652 1.21600 0.96708 0.99593 0.97540 1.21049 1.00147 0.91206 1.00344 1.42586 1.15790 1.66117 1.12334 1.19553 0.92468 1.25118 0.97591 0.90155 1.25380 1.01025 1.03471 0.96656 1.69825 1.36872 1.50907 1.04455 0.85262 0.80816 0.77437 0.77423 1.18988 1.22568 1.22982 0.93273 0.92799 0.93179 0.93679 0.90676 0.90405 0.93387 0.75519 0.84303 0.90357 0.89184 0.93279 0.90978 0.90771 0.90937 0.92675 0.89430 0.89908 0.88256 0.79640 0.94451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 9.18 71.98 0.66 -4.20 16 2 C -0.13 -4.30 5.61 30.59 0.17 -4.13 16 3 C 0.17 6.01 2.59 44.99 0.12 6.13 16 4 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 5 C 0.12 4.23 5.23 86.38 0.45 4.68 16 6 N -0.71 -24.49 5.38 -466.71 -2.51 -27.01 16 7 C 0.54 18.63 7.62 86.57 0.66 19.29 16 8 O -0.58 -22.53 13.22 -4.09 -0.05 -22.59 16 9 C -0.25 -7.09 9.65 23.43 0.23 -6.86 16 10 C -0.02 -0.42 5.38 -17.25 -0.09 -0.51 16 11 C -0.12 -3.16 5.32 30.25 0.16 -3.00 16 12 C -0.12 -2.45 5.95 30.80 0.18 -2.27 16 13 C -0.12 -1.87 5.81 30.57 0.18 -1.69 16 14 C -0.12 -1.82 5.94 30.66 0.18 -1.64 16 15 C -0.09 -1.57 6.04 30.11 0.18 -1.39 16 16 N -0.73 -33.50 4.51 -322.93 -1.46 -34.95 16 17 C -0.22 -10.91 7.75 84.03 0.65 -10.26 16 18 H 0.08 3.91 7.32 -2.91 -0.02 3.89 16 19 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 20 N -0.97 -57.30 13.06 21.65 0.28 -57.02 16 21 Si 0.96 44.57 29.55 68.60 2.03 46.60 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 25 H 0.05 2.03 5.99 -2.39 -0.01 2.01 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.41 14.35 8.12 -92.71 -0.75 13.59 16 33 H 0.14 3.51 7.96 -2.91 -0.02 3.48 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.09 3.00 4.79 -17.12 -0.08 2.92 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 1.32 7.92 -2.39 -0.02 1.30 16 43 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.37 19.16 7.80 -92.71 -0.72 18.44 16 45 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 Total: -1.00 -62.07 354.90 1.91 -60.16 By element: Atomic # 1 Polarization: 44.74 SS G_CDS: -0.58 Total: 44.17 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 4.20 Total: -9.36 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -3.69 Total: -118.97 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -62.07 1.91 -60.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753467275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.352 kcal (2) G-P(sol) polarization free energy of solvation -62.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds