Wall clock time and date at job start Tue Mar 31 2020 01:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47382 * 2 1 4 4 H 1.08996 * 109.46867 * 54.99885 * 3 2 1 5 5 C 1.53000 * 109.47049 * 174.99971 * 3 2 1 6 6 N 1.46506 * 109.46938 * 175.00156 * 5 3 2 7 7 C 1.34770 * 120.00116 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99924 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00138 * 180.02562 * 7 6 5 10 10 H 1.08997 * 110.05323 * 22.95457 * 9 7 6 11 11 C 1.54388 * 110.07221 * 144.44798 * 9 7 6 12 12 C 1.54926 * 104.33528 * 142.72501 * 11 9 7 13 13 C 1.55117 * 102.76019 * 322.44490 * 12 11 9 14 14 C 1.53483 * 110.06544 * 261.41380 * 9 7 6 15 15 C 1.52573 * 121.05478 * 96.53130 * 14 9 7 16 16 C 1.52558 * 121.08428 * 24.82036 * 14 9 7 17 17 N 1.46501 * 109.46895 * 295.00248 * 3 2 1 18 18 C 1.36929 * 120.00010 * 84.99845 * 17 3 2 19 19 H 1.07998 * 120.00299 * 359.97438 * 18 17 3 20 20 C 1.38821 * 119.99855 * 179.97438 * 18 17 3 21 21 N 1.31614 * 119.99924 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99831 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46965 * 89.99672 * 22 20 18 24 24 H 1.48493 * 109.46749 * 209.99834 * 22 20 18 25 25 H 1.48498 * 109.46933 * 329.99806 * 22 20 18 26 26 H 1.08994 * 109.46688 * 299.99832 * 1 2 3 27 27 H 1.09001 * 109.46955 * 60.00095 * 1 2 3 28 28 H 1.09002 * 109.46816 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46821 * 239.99604 * 2 1 3 30 30 H 1.09007 * 109.47150 * 120.00582 * 2 1 3 31 31 H 1.08998 * 109.47492 * 55.00282 * 5 3 2 32 32 H 1.09000 * 109.47233 * 294.99627 * 5 3 2 33 33 H 0.96996 * 119.99532 * 359.97438 * 6 5 3 34 34 H 1.08998 * 110.47436 * 261.47854 * 11 9 7 35 35 H 1.08999 * 110.48070 * 23.97485 * 11 9 7 36 36 H 1.08999 * 110.73932 * 80.68501 * 12 11 9 37 37 H 1.09000 * 110.73760 * 204.00984 * 12 11 9 38 38 H 1.09002 * 110.39549 * 278.75565 * 13 12 11 39 39 H 1.08999 * 110.54946 * 156.10159 * 13 12 11 40 40 H 1.08994 * 117.51253 * 356.97939 * 15 14 9 41 41 H 1.09003 * 117.50820 * 142.07153 * 15 14 9 42 42 H 1.08995 * 117.51091 * 217.89226 * 16 14 9 43 43 H 1.09000 * 117.50788 * 2.93625 * 16 14 9 44 44 H 0.97001 * 119.99744 * 264.99444 * 17 3 2 45 45 H 0.96998 * 119.99881 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 4.0632 2.8167 0.0060 7 6 5.3858 3.0628 0.0858 8 8 6.1636 2.1481 0.2573 9 6 5.8983 4.4747 -0.0367 10 1 5.1097 5.1821 0.2194 11 6 7.1153 4.6790 0.8910 12 6 8.0614 5.6036 0.0846 13 6 7.8889 5.0873 -1.3679 14 6 6.3949 4.7324 -1.4660 15 6 5.4985 5.4051 -2.5013 16 6 5.8591 3.9242 -2.6437 17 7 1.6525 2.0974 -1.2518 18 6 0.4157 2.6734 -1.3687 19 1 -0.2742 2.6445 -0.5383 20 6 0.0487 3.2945 -2.5548 21 7 -1.1399 3.8485 -2.6670 22 14 1.2417 3.3438 -3.9914 23 1 1.0381 2.1461 -4.8452 24 1 1.0004 4.5702 -4.7932 25 1 2.6349 3.3545 -3.4776 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5140 0.8900 31 1 3.9955 0.8310 -0.6659 32 1 3.8500 1.0376 1.0961 33 1 3.4412 3.5481 -0.1315 34 1 6.8102 5.1618 1.8194 35 1 7.6003 3.7254 1.0995 36 1 7.7448 6.6435 0.1639 37 1 9.0924 5.4863 0.4183 38 1 8.5033 4.2020 -1.5319 39 1 8.1438 5.8682 -2.0844 40 1 4.4791 5.6487 -2.2024 41 1 5.9663 6.1059 -3.1929 42 1 6.5639 3.6508 -3.4289 43 1 5.0771 3.1931 -2.4384 44 1 2.2720 2.1231 -1.9978 45 1 -1.3962 4.2828 -3.4956 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753479567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:20 Heat of formation + Delta-G solvation = -20.794724 kcal Electronic energy + Delta-G solvation = -23156.699538 eV Core-core repulsion = 19981.275175 eV Total energy + Delta-G solvation = -3175.424363 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.35367 -38.10314 -36.74772 -34.23734 -33.66437 -32.36437 -30.32208 -29.72050 -27.79929 -25.80318 -23.60337 -22.52871 -22.41735 -21.07332 -20.37000 -20.11953 -18.80083 -17.60731 -16.73466 -15.93276 -15.68779 -15.37299 -14.90562 -14.56093 -14.20403 -13.92712 -13.46665 -13.25216 -12.97588 -12.87995 -12.71160 -12.52603 -12.37736 -11.68037 -11.56374 -11.42815 -11.20684 -11.14239 -11.01248 -10.90949 -10.72583 -10.67692 -10.41579 -10.32399 -10.22497 -10.02745 -9.98387 -9.51632 -9.31827 -8.99496 -8.72892 -7.36958 -5.83995 -3.19999 2.85771 3.31577 3.36157 3.39237 3.42501 3.86822 4.31435 4.52286 4.54609 4.81500 4.85355 5.04534 5.15666 5.18524 5.22399 5.32336 5.38154 5.42968 5.52867 5.69020 5.72466 5.75005 5.77502 5.82742 5.87637 5.89817 5.92759 5.98637 6.03282 6.08484 6.13624 6.20315 6.26897 6.28640 6.46964 6.52523 6.57695 6.81522 6.93009 7.27311 7.85593 7.91796 8.34088 8.50936 9.12254 9.84660 10.04286 11.33551 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016601 B = 0.005964 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.276152 B = 4693.967481 C = 5871.536474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.062 0.938 5 C 0.111 3.889 6 N -0.717 5.717 7 C 0.519 3.481 8 O -0.550 6.550 9 C -0.078 4.078 10 H 0.091 0.909 11 C -0.110 4.110 12 C -0.119 4.119 13 C -0.085 4.085 14 C -0.118 4.118 15 C -0.165 4.165 16 C -0.169 4.169 17 N -0.746 5.746 18 C -0.242 4.242 19 H 0.094 0.906 20 C 0.007 3.993 21 N -0.931 5.931 22 Si 0.878 3.122 23 H -0.287 1.287 24 H -0.293 1.293 25 H -0.274 1.274 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.032 0.968 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.409 0.591 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.361 0.639 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.243 1.974 4.917 16.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C 0.059 3.941 4 H 0.080 0.920 5 C -0.013 4.013 6 N -0.369 5.369 7 C 0.306 3.694 8 O -0.428 6.428 9 C -0.099 4.099 10 H 0.109 0.891 11 C -0.148 4.148 12 C -0.157 4.157 13 C -0.122 4.122 14 C -0.118 4.118 15 C -0.202 4.202 16 C -0.206 4.206 17 N -0.389 5.389 18 C -0.371 4.371 19 H 0.112 0.888 20 C -0.189 4.189 21 N -0.578 5.578 22 Si 0.709 3.291 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.200 1.200 26 H 0.061 0.939 27 H 0.106 0.894 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.245 0.755 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.532 1.408 5.092 16.406 hybrid contribution 0.208 0.321 -1.343 1.397 sum 15.740 1.729 3.749 16.273 Atomic orbital electron populations 1.21779 0.95206 0.99699 1.03760 1.22038 0.97340 0.97882 1.00074 1.20542 0.89903 0.92943 0.90747 0.92019 1.21707 0.95464 0.82876 1.01294 1.46136 1.07282 1.10662 1.72775 1.20438 0.82245 0.90957 0.75810 1.90633 1.56062 1.46345 1.49755 1.21412 0.99240 0.94285 0.95000 0.89090 1.22335 0.94381 1.01075 0.96974 1.22461 0.99326 0.99056 0.94813 1.21876 0.92847 1.00554 0.96959 1.21494 0.95297 1.05653 0.89380 1.23072 1.00312 0.95656 1.01118 1.23003 1.03317 0.94781 0.99509 1.42812 1.16776 1.67661 1.11685 1.19049 0.90592 1.27656 0.99852 0.88796 1.24656 0.96368 1.00329 0.97517 1.69689 1.19332 1.42057 1.26737 0.86651 0.81334 0.77266 0.83864 1.21338 1.21910 1.19954 0.93890 0.89364 0.94874 0.92704 0.93584 0.92059 0.91568 0.75511 0.91331 0.89729 0.91349 0.91280 0.91058 0.91543 0.88269 0.88573 0.88746 0.88431 0.80556 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.18 37.16 0.34 -2.29 16 2 C -0.13 -2.20 5.61 -26.73 -0.15 -2.35 16 3 C 0.17 2.95 2.59 -67.93 -0.18 2.78 16 4 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 5 C 0.11 1.78 5.23 -4.04 -0.02 1.76 16 6 N -0.72 -11.30 5.25 -60.29 -0.32 -11.62 16 7 C 0.52 8.23 5.51 -10.99 -0.06 8.17 16 8 O -0.55 -10.28 15.85 5.56 0.09 -10.19 16 9 C -0.08 -1.02 3.16 -90.80 -0.29 -1.30 16 10 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 11 C -0.11 -1.25 6.32 -24.99 -0.16 -1.41 16 12 C -0.12 -1.14 6.92 -24.60 -0.17 -1.31 16 13 C -0.09 -0.91 6.58 -25.16 -0.17 -1.08 16 14 C -0.12 -1.50 2.26 -154.25 -0.35 -1.85 16 15 C -0.16 -2.12 10.23 -26.90 -0.28 -2.39 16 16 C -0.17 -2.42 9.63 -26.91 -0.26 -2.68 16 17 N -0.75 -15.74 4.31 -53.43 -0.23 -15.97 16 18 C -0.24 -6.14 8.24 -15.06 -0.12 -6.26 16 19 H 0.09 2.58 7.55 -52.49 -0.40 2.18 16 20 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 21 N -0.93 -27.75 13.97 55.49 0.78 -26.98 16 22 Si 0.88 21.04 27.74 -169.99 -4.71 16.33 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.27 -6.07 6.52 56.52 0.37 -5.70 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 1.90 5.99 -51.93 -0.31 1.59 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.41 6.49 8.11 -40.82 -0.33 6.16 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.11 6.97 -51.93 -0.36 0.75 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 40 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.10 1.62 7.18 -51.93 -0.37 1.25 16 44 H 0.36 7.77 5.66 -40.82 -0.23 7.54 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 354.74 15.07 5.35 5.35 Total: -1.00 -29.55 354.74 -8.93 -38.48 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -7.93 Total: 14.70 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -1.95 Total: -10.11 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.23 Total: -54.56 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.71 Total: 16.33 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.55 -8.93 -38.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753479567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.686 kcal (2) G-P(sol) polarization free energy of solvation -29.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds