Wall clock time and date at job start Tue Mar 31 2020 01:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47382 * 2 1 4 4 H 1.08996 * 109.46867 * 54.99885 * 3 2 1 5 5 C 1.53000 * 109.47049 * 174.99971 * 3 2 1 6 6 N 1.46506 * 109.46938 * 175.00156 * 5 3 2 7 7 C 1.34770 * 120.00116 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99924 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00138 * 180.02562 * 7 6 5 10 10 H 1.08997 * 110.05323 * 22.95457 * 9 7 6 11 11 C 1.54388 * 110.07221 * 144.44798 * 9 7 6 12 12 C 1.54926 * 104.33528 * 142.72501 * 11 9 7 13 13 C 1.55117 * 102.76019 * 322.44490 * 12 11 9 14 14 C 1.53483 * 110.06544 * 261.41380 * 9 7 6 15 15 C 1.52573 * 121.05478 * 96.53130 * 14 9 7 16 16 C 1.52558 * 121.08428 * 24.82036 * 14 9 7 17 17 N 1.46501 * 109.46895 * 295.00248 * 3 2 1 18 18 C 1.36929 * 120.00010 * 84.99845 * 17 3 2 19 19 H 1.07998 * 120.00299 * 359.97438 * 18 17 3 20 20 C 1.38821 * 119.99855 * 179.97438 * 18 17 3 21 21 N 1.31614 * 119.99924 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99831 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46965 * 89.99672 * 22 20 18 24 24 H 1.48493 * 109.46749 * 209.99834 * 22 20 18 25 25 H 1.48498 * 109.46933 * 329.99806 * 22 20 18 26 26 H 1.08994 * 109.46688 * 299.99832 * 1 2 3 27 27 H 1.09001 * 109.46955 * 60.00095 * 1 2 3 28 28 H 1.09002 * 109.46816 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46821 * 239.99604 * 2 1 3 30 30 H 1.09007 * 109.47150 * 120.00582 * 2 1 3 31 31 H 1.08998 * 109.47492 * 55.00282 * 5 3 2 32 32 H 1.09000 * 109.47233 * 294.99627 * 5 3 2 33 33 H 0.96996 * 119.99532 * 359.97438 * 6 5 3 34 34 H 1.08998 * 110.47436 * 261.47854 * 11 9 7 35 35 H 1.08999 * 110.48070 * 23.97485 * 11 9 7 36 36 H 1.08999 * 110.73932 * 80.68501 * 12 11 9 37 37 H 1.09000 * 110.73760 * 204.00984 * 12 11 9 38 38 H 1.09002 * 110.39549 * 278.75565 * 13 12 11 39 39 H 1.08999 * 110.54946 * 156.10159 * 13 12 11 40 40 H 1.08994 * 117.51253 * 356.97939 * 15 14 9 41 41 H 1.09003 * 117.50820 * 142.07153 * 15 14 9 42 42 H 1.08995 * 117.51091 * 217.89226 * 16 14 9 43 43 H 1.09000 * 117.50788 * 2.93625 * 16 14 9 44 44 H 0.97001 * 119.99744 * 264.99444 * 17 3 2 45 45 H 0.96998 * 119.99881 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 4.0632 2.8167 0.0060 7 6 5.3858 3.0628 0.0858 8 8 6.1636 2.1481 0.2573 9 6 5.8983 4.4747 -0.0367 10 1 5.1097 5.1821 0.2194 11 6 7.1153 4.6790 0.8910 12 6 8.0614 5.6036 0.0846 13 6 7.8889 5.0873 -1.3679 14 6 6.3949 4.7324 -1.4660 15 6 5.4985 5.4051 -2.5013 16 6 5.8591 3.9242 -2.6437 17 7 1.6525 2.0974 -1.2518 18 6 0.4157 2.6734 -1.3687 19 1 -0.2742 2.6445 -0.5383 20 6 0.0487 3.2945 -2.5548 21 7 -1.1399 3.8485 -2.6670 22 14 1.2417 3.3438 -3.9914 23 1 1.0381 2.1461 -4.8452 24 1 1.0004 4.5702 -4.7932 25 1 2.6349 3.3545 -3.4776 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5140 0.8900 31 1 3.9955 0.8310 -0.6659 32 1 3.8500 1.0376 1.0961 33 1 3.4412 3.5481 -0.1315 34 1 6.8102 5.1618 1.8194 35 1 7.6003 3.7254 1.0995 36 1 7.7448 6.6435 0.1639 37 1 9.0924 5.4863 0.4183 38 1 8.5033 4.2020 -1.5319 39 1 8.1438 5.8682 -2.0844 40 1 4.4791 5.6487 -2.2024 41 1 5.9663 6.1059 -3.1929 42 1 6.5639 3.6508 -3.4289 43 1 5.0771 3.1931 -2.4384 44 1 2.2720 2.1231 -1.9978 45 1 -1.3962 4.2828 -3.4956 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753479567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:19 Heat of formation + Delta-G solvation = -38.654229 kcal Electronic energy + Delta-G solvation = -23157.473985 eV Core-core repulsion = 19981.275175 eV Total energy + Delta-G solvation = -3176.198810 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.49190 -39.29705 -38.23840 -35.38828 -34.95107 -34.15911 -32.09410 -30.86565 -29.13662 -26.76702 -25.30009 -24.05290 -23.48441 -22.12188 -21.74390 -21.33057 -20.08049 -19.34822 -17.94808 -17.20203 -16.97548 -16.73062 -16.02628 -15.93628 -15.69509 -15.22542 -14.79449 -14.70064 -14.55620 -14.31076 -14.11877 -13.67312 -13.44803 -13.12910 -12.91210 -12.89827 -12.58418 -12.47893 -12.32214 -12.11987 -11.97641 -11.91966 -11.82371 -11.60887 -11.52817 -11.43144 -11.21479 -11.13847 -10.94624 -10.45084 -10.05082 -9.30098 -7.96026 -5.27949 1.38821 1.41074 1.47313 1.62222 2.20908 2.51016 2.80191 3.35750 3.37215 3.56256 3.62017 3.81776 3.85612 3.88557 4.04566 4.24142 4.29818 4.33267 4.43001 4.46096 4.53334 4.67171 4.68744 4.72750 4.75650 4.80580 4.89535 4.96502 5.04104 5.05212 5.10463 5.12453 5.16012 5.17509 5.17947 5.25842 5.43118 5.47610 5.54724 5.70976 5.86384 6.26311 6.57489 7.12277 7.24478 7.86981 8.05855 9.24875 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016601 B = 0.005964 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.276152 B = 4693.967481 C = 5871.536474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.169 3.831 4 H 0.059 0.941 5 C 0.120 3.880 6 N -0.717 5.717 7 C 0.520 3.480 8 O -0.580 6.580 9 C -0.081 4.081 10 H 0.102 0.898 11 C -0.109 4.109 12 C -0.111 4.111 13 C -0.085 4.085 14 C -0.114 4.114 15 C -0.158 4.158 16 C -0.191 4.191 17 N -0.744 5.744 18 C -0.204 4.204 19 H 0.069 0.931 20 C -0.058 4.058 21 N -0.982 5.982 22 Si 0.939 3.061 23 H -0.294 1.294 24 H -0.303 1.303 25 H -0.249 1.249 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.408 0.592 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.117 0.883 42 H 0.103 0.897 43 H 0.070 0.930 44 H 0.362 0.638 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.655 2.271 5.585 18.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.061 3.939 4 H 0.077 0.923 5 C -0.005 4.005 6 N -0.368 5.368 7 C 0.307 3.693 8 O -0.460 6.460 9 C -0.102 4.102 10 H 0.120 0.880 11 C -0.147 4.147 12 C -0.149 4.149 13 C -0.122 4.122 14 C -0.114 4.114 15 C -0.195 4.195 16 C -0.228 4.228 17 N -0.388 5.388 18 C -0.335 4.335 19 H 0.087 0.913 20 C -0.250 4.250 21 N -0.633 5.633 22 Si 0.768 3.232 23 H -0.222 1.222 24 H -0.230 1.230 25 H -0.173 1.173 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.245 0.755 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.135 0.865 42 H 0.121 0.879 43 H 0.089 0.911 44 H 0.195 0.805 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.989 1.678 5.796 18.974 hybrid contribution -0.573 0.130 -1.428 1.544 sum 17.416 1.809 4.368 18.046 Atomic orbital electron populations 1.21686 0.96265 1.00445 1.01615 1.21968 0.96200 0.97041 1.01636 1.20679 0.91107 0.93317 0.88797 0.92264 1.21588 0.93830 0.83211 1.01838 1.46169 1.07517 1.10475 1.72660 1.20920 0.81752 0.91885 0.74708 1.90616 1.56647 1.47585 1.51196 1.21546 1.00305 0.92460 0.95915 0.87969 1.22347 0.93899 1.00790 0.97649 1.22470 0.99756 0.99245 0.93387 1.21923 0.91020 1.00893 0.98362 1.21626 0.96637 1.04544 0.88635 1.23124 1.00050 0.94919 1.01387 1.22990 1.03470 0.95171 1.01161 1.42787 1.15230 1.67637 1.13134 1.18951 0.91160 1.25060 0.98328 0.91342 1.25267 0.97875 1.01557 1.00263 1.69847 1.21646 1.44626 1.27217 0.85654 0.80717 0.76154 0.80635 1.22155 1.23005 1.17307 0.93856 0.93538 0.92775 0.92773 0.90328 0.92665 0.90108 0.75549 0.89765 0.91705 0.89829 0.89771 0.91804 0.89749 0.89287 0.86482 0.87867 0.91100 0.80483 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 9.18 71.98 0.66 -4.30 16 2 C -0.13 -3.98 5.61 30.59 0.17 -3.81 16 3 C 0.17 5.70 2.59 44.99 0.12 5.82 16 4 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 5 C 0.12 3.65 5.23 86.38 0.45 4.10 16 6 N -0.72 -21.74 5.25 -463.06 -2.43 -24.17 16 7 C 0.52 15.85 5.51 87.66 0.48 16.33 16 8 O -0.58 -21.18 15.85 -3.04 -0.05 -21.23 16 9 C -0.08 -1.96 3.16 -10.91 -0.03 -2.00 16 10 H 0.10 2.23 8.11 -2.39 -0.02 2.21 16 11 C -0.11 -2.23 6.32 31.72 0.20 -2.03 16 12 C -0.11 -1.76 6.92 31.98 0.22 -1.54 16 13 C -0.08 -1.58 6.58 31.61 0.21 -1.37 16 14 C -0.11 -2.67 2.26 -52.01 -0.12 -2.78 16 15 C -0.16 -3.72 10.23 30.48 0.31 -3.41 16 16 C -0.19 -5.20 9.63 30.48 0.29 -4.91 16 17 N -0.74 -30.93 4.31 -322.94 -1.39 -32.32 16 18 C -0.20 -10.46 8.24 84.04 0.69 -9.77 16 19 H 0.07 3.85 7.55 -2.91 -0.02 3.83 16 20 C -0.06 -3.24 5.50 84.87 0.47 -2.77 16 21 N -0.98 -60.36 13.97 21.65 0.30 -60.05 16 22 Si 0.94 44.09 27.74 68.60 1.90 46.00 16 23 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 24 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 25 H -0.25 -10.46 6.52 99.48 0.65 -9.81 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 2.00 5.99 -2.39 -0.01 1.99 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.41 12.51 8.11 -92.71 -0.75 11.76 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 1.61 6.97 -2.39 -0.02 1.59 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.29 8.11 -2.39 -0.02 1.27 16 40 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.07 2.31 7.18 -2.39 -0.02 2.29 16 44 H 0.36 15.16 5.66 -92.71 -0.52 14.63 16 45 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -64.88 354.74 2.09 -62.79 By element: Atomic # 1 Polarization: 41.80 SS G_CDS: -0.37 Total: 41.43 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 4.13 Total: -12.44 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -3.52 Total: -116.55 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.05 Total: -21.23 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.90 Total: 46.00 kcal Total: -64.88 2.09 -62.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753479567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.136 kcal (2) G-P(sol) polarization free energy of solvation -64.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds