Wall clock time and date at job start Tue Mar 31 2020 01:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46947 * 2 1 4 4 H 1.08994 * 109.47245 * 55.00019 * 3 2 1 5 5 C 1.52998 * 109.46855 * 175.00317 * 3 2 1 6 6 N 1.46498 * 109.46883 * 175.00152 * 5 3 2 7 7 C 1.34781 * 120.00151 * 179.97438 * 6 5 3 8 8 O 1.21282 * 119.99662 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00149 * 180.27473 * 7 6 5 10 10 H 1.09001 * 110.05057 * 336.60179 * 9 7 6 11 11 C 1.54385 * 110.06605 * 215.12223 * 9 7 6 12 12 C 1.54932 * 104.21977 * 217.21713 * 11 9 7 13 13 C 1.54989 * 102.81823 * 37.71672 * 12 11 9 14 14 C 1.53479 * 110.07169 * 98.14940 * 9 7 6 15 15 C 1.52552 * 121.08863 * 335.14440 * 14 9 7 16 16 C 1.52571 * 121.05086 * 263.43117 * 14 9 7 17 17 N 1.46499 * 109.46949 * 294.99848 * 3 2 1 18 18 C 1.36941 * 119.99985 * 85.00047 * 17 3 2 19 19 H 1.08001 * 119.99789 * 0.02562 * 18 17 3 20 20 C 1.38815 * 120.00194 * 179.97438 * 18 17 3 21 21 N 1.31615 * 119.99907 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99788 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47235 * 89.99923 * 22 20 18 24 24 H 1.48502 * 109.47072 * 209.99817 * 22 20 18 25 25 H 1.48500 * 109.47055 * 329.99714 * 22 20 18 26 26 H 1.08998 * 109.47211 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46994 * 300.00024 * 1 2 3 28 28 H 1.09003 * 109.46847 * 60.00357 * 1 2 3 29 29 H 1.08995 * 109.46994 * 239.99976 * 2 1 3 30 30 H 1.08993 * 109.47397 * 119.99654 * 2 1 3 31 31 H 1.08992 * 109.47525 * 55.00175 * 5 3 2 32 32 H 1.08999 * 109.47051 * 294.99635 * 5 3 2 33 33 H 0.97006 * 120.00222 * 359.97438 * 6 5 3 34 34 H 1.08998 * 110.47968 * 335.89714 * 11 9 7 35 35 H 1.08999 * 110.48104 * 98.40352 * 11 9 7 36 36 H 1.08993 * 110.74356 * 156.05078 * 12 11 9 37 37 H 1.09007 * 110.73973 * 279.20441 * 12 11 9 38 38 H 1.09003 * 110.50854 * 81.07511 * 13 12 11 39 39 H 1.09003 * 110.50920 * 203.64177 * 13 12 11 40 40 H 1.09004 * 117.50593 * 357.03694 * 15 14 9 41 41 H 1.08999 * 117.51279 * 142.11603 * 15 14 9 42 42 H 1.08992 * 117.51083 * 217.93926 * 16 14 9 43 43 H 1.09000 * 117.51079 * 3.03062 * 16 14 9 44 44 H 0.96999 * 120.00402 * 265.00294 * 17 3 2 45 45 H 0.97003 * 119.99983 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1256 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0632 0.0867 8 8 6.1633 2.1486 0.2591 9 6 5.8976 4.4757 -0.0302 10 1 5.1770 5.0910 -0.5692 11 6 7.2567 4.4876 -0.7624 12 6 8.0690 5.5910 -0.0390 13 6 7.6479 5.4129 1.4419 14 6 6.1520 5.0611 1.3656 15 6 5.4100 4.5319 2.5889 16 6 5.1081 5.9345 2.0549 17 7 1.6524 2.0975 -1.2518 18 6 0.4156 2.6735 -1.3689 19 1 -0.2740 2.6452 -0.5381 20 6 0.0485 3.2945 -2.5548 21 7 -1.1401 3.8485 -2.6671 22 14 1.2415 3.3439 -3.9914 23 1 1.0380 2.1462 -4.8453 24 1 1.0002 4.5703 -4.7933 25 1 2.6348 3.3547 -3.4776 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8899 31 1 3.9954 0.8313 -0.6660 32 1 3.8499 1.0378 1.0959 33 1 3.4409 3.5484 -0.1316 34 1 7.7522 3.5219 -0.6625 35 1 7.1211 4.7388 -1.8143 36 1 9.1393 5.4236 -0.1589 37 1 7.7906 6.5788 -0.4064 38 1 8.2085 4.5999 1.9032 39 1 7.7966 6.3402 1.9953 40 1 4.6588 3.7589 2.4266 41 1 5.9672 4.4578 3.5227 42 1 5.4668 6.7830 2.6374 43 1 4.1583 6.0841 1.5414 44 1 2.2719 2.1232 -1.9978 45 1 -1.3968 4.2821 -3.4959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753479568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:23 Heat of formation + Delta-G solvation = -20.806927 kcal Electronic energy + Delta-G solvation = -22933.032313 eV Core-core repulsion = 19757.607420 eV Total energy + Delta-G solvation = -3175.424893 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.38036 -38.13688 -36.74981 -34.29029 -33.66819 -32.36667 -30.32375 -29.73271 -27.80671 -25.82956 -23.60687 -22.59749 -22.45772 -21.07880 -20.40255 -20.11307 -18.82281 -17.62464 -16.74986 -15.94813 -15.73382 -15.40053 -14.94254 -14.49691 -14.17680 -14.08109 -13.47261 -13.23397 -12.98824 -12.89487 -12.70328 -12.55479 -12.42128 -11.68473 -11.58849 -11.51019 -11.22209 -11.15087 -11.01329 -10.94269 -10.72698 -10.68369 -10.42573 -10.32714 -10.31786 -10.06549 -10.00465 -9.52047 -9.34341 -9.00052 -8.73027 -7.37144 -5.84353 -3.20273 2.85306 3.30986 3.35636 3.36641 3.41417 3.80657 4.27421 4.50640 4.52033 4.75538 4.78522 4.99869 5.13179 5.16959 5.21464 5.31820 5.39445 5.42797 5.51051 5.59892 5.65449 5.73224 5.77186 5.78395 5.87357 5.89185 5.89940 5.93816 5.99620 6.05998 6.08273 6.10809 6.26561 6.28325 6.46823 6.52406 6.57618 6.81363 6.92896 7.27274 7.85261 7.91597 8.33900 8.50581 9.12030 9.84494 10.04081 11.33284 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016658 B = 0.005171 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.420383 B = 5413.539340 C = 6058.555548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.169 3.831 4 H 0.062 0.938 5 C 0.111 3.889 6 N -0.717 5.717 7 C 0.520 3.480 8 O -0.550 6.550 9 C -0.079 4.079 10 H 0.092 0.908 11 C -0.111 4.111 12 C -0.119 4.119 13 C -0.085 4.085 14 C -0.117 4.117 15 C -0.169 4.169 16 C -0.165 4.165 17 N -0.746 5.746 18 C -0.242 4.242 19 H 0.095 0.905 20 C 0.008 3.992 21 N -0.931 5.931 22 Si 0.880 3.120 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.278 1.278 26 H 0.032 0.968 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.409 0.591 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.362 0.638 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.938 2.344 8.141 17.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C 0.059 3.941 4 H 0.080 0.920 5 C -0.013 4.013 6 N -0.368 5.368 7 C 0.306 3.694 8 O -0.428 6.428 9 C -0.101 4.101 10 H 0.110 0.890 11 C -0.149 4.149 12 C -0.157 4.157 13 C -0.122 4.122 14 C -0.117 4.117 15 C -0.206 4.206 16 C -0.202 4.202 17 N -0.390 5.390 18 C -0.371 4.371 19 H 0.112 0.888 20 C -0.188 4.188 21 N -0.578 5.578 22 Si 0.710 3.290 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.204 1.204 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.245 0.755 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.228 1.776 8.299 17.433 hybrid contribution 0.238 0.336 -1.258 1.324 sum 15.466 2.112 7.042 17.124 Atomic orbital electron populations 1.21780 0.95203 0.99703 1.03760 1.22037 0.97344 0.97880 1.00083 1.20539 0.89897 0.92941 0.90720 0.92042 1.21704 0.95474 0.82880 1.01283 1.46137 1.07284 1.10635 1.72779 1.20431 0.82282 0.90802 0.75917 1.90633 1.56103 1.46350 1.49701 1.21424 0.99301 0.93541 0.95809 0.89009 1.22346 0.93431 1.00585 0.98541 1.22439 0.99560 0.98753 0.94918 1.21850 0.92373 1.00987 0.97006 1.21489 0.94219 1.03977 0.92021 1.22987 1.03008 0.97431 0.97170 1.23071 0.99710 0.94168 1.03261 1.42826 1.16788 1.67668 1.11715 1.19054 0.90594 1.27649 0.99852 0.88772 1.24650 0.96360 1.00327 0.97506 1.69689 1.19304 1.42086 1.26724 0.86636 0.81114 0.77337 0.83897 1.21189 1.21853 1.20381 0.94866 0.93900 0.89355 0.92684 0.93585 0.92006 0.91611 0.75506 0.89704 0.91266 0.91300 0.91321 0.91025 0.91542 0.88507 0.88710 0.88570 0.88293 0.80531 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.18 37.16 0.34 -2.29 16 2 C -0.13 -2.20 5.61 -26.73 -0.15 -2.35 16 3 C 0.17 2.97 2.59 -67.93 -0.18 2.79 16 4 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 5 C 0.11 1.79 5.23 -4.04 -0.02 1.77 16 6 N -0.72 -11.32 5.23 -60.30 -0.32 -11.64 16 7 C 0.52 8.25 5.52 -10.98 -0.06 8.19 16 8 O -0.55 -10.29 15.85 5.56 0.09 -10.20 16 9 C -0.08 -1.04 3.16 -90.80 -0.29 -1.32 16 10 H 0.09 1.16 8.11 -51.93 -0.42 0.73 16 11 C -0.11 -1.33 6.33 -24.99 -0.16 -1.49 16 12 C -0.12 -1.15 6.91 -24.66 -0.17 -1.32 16 13 C -0.08 -0.85 6.58 -25.23 -0.17 -1.02 16 14 C -0.12 -1.35 2.26 -154.26 -0.35 -1.70 16 15 C -0.17 -1.97 9.63 -26.92 -0.26 -2.23 16 16 C -0.17 -1.74 10.24 -26.91 -0.28 -2.01 16 17 N -0.75 -15.88 4.31 -53.42 -0.23 -16.11 16 18 C -0.24 -6.16 8.23 -15.06 -0.12 -6.29 16 19 H 0.09 2.59 7.55 -52.49 -0.40 2.19 16 20 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 21 N -0.93 -27.77 13.97 55.49 0.78 -27.00 16 22 Si 0.88 21.19 27.74 -169.99 -4.71 16.48 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 1.90 5.99 -51.93 -0.31 1.59 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.41 6.51 8.11 -40.82 -0.33 6.18 16 34 H 0.08 1.16 6.97 -51.93 -0.36 0.80 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 40 H 0.10 1.27 7.17 -51.93 -0.37 0.90 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.36 7.87 5.66 -40.82 -0.23 7.64 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 354.70 15.07 5.35 5.35 Total: -1.00 -29.63 354.70 -8.93 -38.56 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -7.93 Total: 13.73 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -1.95 Total: -9.17 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.23 Total: -54.74 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.71 Total: 16.48 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.63 -8.93 -38.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753479568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.756 kcal (2) G-P(sol) polarization free energy of solvation -29.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds