Wall clock time and date at job start Tue Mar 31 2020 01:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46947 * 2 1 4 4 H 1.08994 * 109.47245 * 55.00019 * 3 2 1 5 5 C 1.52998 * 109.46855 * 175.00317 * 3 2 1 6 6 N 1.46498 * 109.46883 * 175.00152 * 5 3 2 7 7 C 1.34781 * 120.00151 * 179.97438 * 6 5 3 8 8 O 1.21282 * 119.99662 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00149 * 180.27473 * 7 6 5 10 10 H 1.09001 * 110.05057 * 336.60179 * 9 7 6 11 11 C 1.54385 * 110.06605 * 215.12223 * 9 7 6 12 12 C 1.54932 * 104.21977 * 217.21713 * 11 9 7 13 13 C 1.54989 * 102.81823 * 37.71672 * 12 11 9 14 14 C 1.53479 * 110.07169 * 98.14940 * 9 7 6 15 15 C 1.52552 * 121.08863 * 335.14440 * 14 9 7 16 16 C 1.52571 * 121.05086 * 263.43117 * 14 9 7 17 17 N 1.46499 * 109.46949 * 294.99848 * 3 2 1 18 18 C 1.36941 * 119.99985 * 85.00047 * 17 3 2 19 19 H 1.08001 * 119.99789 * 0.02562 * 18 17 3 20 20 C 1.38815 * 120.00194 * 179.97438 * 18 17 3 21 21 N 1.31615 * 119.99907 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99788 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47235 * 89.99923 * 22 20 18 24 24 H 1.48502 * 109.47072 * 209.99817 * 22 20 18 25 25 H 1.48500 * 109.47055 * 329.99714 * 22 20 18 26 26 H 1.08998 * 109.47211 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46994 * 300.00024 * 1 2 3 28 28 H 1.09003 * 109.46847 * 60.00357 * 1 2 3 29 29 H 1.08995 * 109.46994 * 239.99976 * 2 1 3 30 30 H 1.08993 * 109.47397 * 119.99654 * 2 1 3 31 31 H 1.08992 * 109.47525 * 55.00175 * 5 3 2 32 32 H 1.08999 * 109.47051 * 294.99635 * 5 3 2 33 33 H 0.97006 * 120.00222 * 359.97438 * 6 5 3 34 34 H 1.08998 * 110.47968 * 335.89714 * 11 9 7 35 35 H 1.08999 * 110.48104 * 98.40352 * 11 9 7 36 36 H 1.08993 * 110.74356 * 156.05078 * 12 11 9 37 37 H 1.09007 * 110.73973 * 279.20441 * 12 11 9 38 38 H 1.09003 * 110.50854 * 81.07511 * 13 12 11 39 39 H 1.09003 * 110.50920 * 203.64177 * 13 12 11 40 40 H 1.09004 * 117.50593 * 357.03694 * 15 14 9 41 41 H 1.08999 * 117.51279 * 142.11603 * 15 14 9 42 42 H 1.08992 * 117.51083 * 217.93926 * 16 14 9 43 43 H 1.09000 * 117.51079 * 3.03062 * 16 14 9 44 44 H 0.96999 * 120.00402 * 265.00294 * 17 3 2 45 45 H 0.97003 * 119.99983 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1256 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0632 0.0867 8 8 6.1633 2.1486 0.2591 9 6 5.8976 4.4757 -0.0302 10 1 5.1770 5.0910 -0.5692 11 6 7.2567 4.4876 -0.7624 12 6 8.0690 5.5910 -0.0390 13 6 7.6479 5.4129 1.4419 14 6 6.1520 5.0611 1.3656 15 6 5.4100 4.5319 2.5889 16 6 5.1081 5.9345 2.0549 17 7 1.6524 2.0975 -1.2518 18 6 0.4156 2.6735 -1.3689 19 1 -0.2740 2.6452 -0.5381 20 6 0.0485 3.2945 -2.5548 21 7 -1.1401 3.8485 -2.6671 22 14 1.2415 3.3439 -3.9914 23 1 1.0380 2.1462 -4.8453 24 1 1.0002 4.5703 -4.7933 25 1 2.6348 3.3547 -3.4776 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8899 31 1 3.9954 0.8313 -0.6660 32 1 3.8499 1.0378 1.0959 33 1 3.4409 3.5484 -0.1316 34 1 7.7522 3.5219 -0.6625 35 1 7.1211 4.7388 -1.8143 36 1 9.1393 5.4236 -0.1589 37 1 7.7906 6.5788 -0.4064 38 1 8.2085 4.5999 1.9032 39 1 7.7966 6.3402 1.9953 40 1 4.6588 3.7589 2.4266 41 1 5.9672 4.4578 3.5227 42 1 5.4668 6.7830 2.6374 43 1 4.1583 6.0841 1.5414 44 1 2.2719 2.1232 -1.9978 45 1 -1.3968 4.2821 -3.4959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753479568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:22 Heat of formation + Delta-G solvation = -38.619747 kcal Electronic energy + Delta-G solvation = -22933.804734 eV Core-core repulsion = 19757.607420 eV Total energy + Delta-G solvation = -3176.197315 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.48754 -39.29152 -38.23053 -35.39634 -34.93474 -34.16064 -32.09602 -30.86820 -29.14049 -26.75948 -25.29850 -24.05969 -23.40634 -22.12847 -21.76630 -21.31380 -20.06491 -19.35225 -17.95796 -17.14361 -17.07195 -16.66219 -16.08370 -15.89364 -15.52232 -15.39201 -14.76581 -14.71467 -14.54048 -14.30188 -14.10937 -13.66992 -13.44620 -13.12362 -12.91657 -12.88995 -12.58743 -12.41071 -12.32372 -12.13036 -11.98366 -11.91485 -11.82988 -11.61339 -11.55008 -11.43255 -11.17455 -11.13244 -10.93714 -10.42129 -10.05492 -9.30378 -7.96113 -5.28213 1.38312 1.40921 1.47104 1.62115 2.20828 2.50886 2.85148 3.35812 3.38691 3.56210 3.63059 3.82536 3.87722 3.89168 4.08087 4.25305 4.29808 4.32432 4.42483 4.46656 4.53209 4.66567 4.70860 4.76318 4.78575 4.80360 4.90863 4.99769 5.04899 5.05759 5.10484 5.13354 5.16497 5.17904 5.22365 5.26335 5.42427 5.46774 5.54069 5.70995 5.86271 6.26346 6.56890 7.12127 7.23876 7.86730 8.05614 9.24890 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016658 B = 0.005171 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.420383 B = 5413.539340 C = 6058.555548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.170 3.830 4 H 0.058 0.942 5 C 0.120 3.880 6 N -0.717 5.717 7 C 0.520 3.480 8 O -0.580 6.580 9 C -0.082 4.082 10 H 0.096 0.904 11 C -0.113 4.113 12 C -0.112 4.112 13 C -0.083 4.083 14 C -0.124 4.124 15 C -0.180 4.180 16 C -0.152 4.152 17 N -0.745 5.745 18 C -0.205 4.205 19 H 0.069 0.931 20 C -0.058 4.058 21 N -0.982 5.982 22 Si 0.940 3.060 23 H -0.290 1.290 24 H -0.302 1.302 25 H -0.254 1.254 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.409 0.591 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.362 0.638 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.133 2.588 8.885 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.062 3.938 4 H 0.076 0.924 5 C -0.005 4.005 6 N -0.368 5.368 7 C 0.307 3.693 8 O -0.461 6.461 9 C -0.103 4.103 10 H 0.114 0.886 11 C -0.151 4.151 12 C -0.149 4.149 13 C -0.120 4.120 14 C -0.124 4.124 15 C -0.217 4.217 16 C -0.189 4.189 17 N -0.389 5.389 18 C -0.336 4.336 19 H 0.086 0.914 20 C -0.250 4.250 21 N -0.633 5.633 22 Si 0.770 3.230 23 H -0.217 1.217 24 H -0.229 1.229 25 H -0.179 1.179 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.245 0.755 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.123 0.877 42 H 0.135 0.865 43 H 0.112 0.888 44 H 0.195 0.805 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.465 1.992 9.078 19.784 hybrid contribution -0.475 0.166 -1.365 1.455 sum 16.990 2.158 7.713 18.783 Atomic orbital electron populations 1.21687 0.96265 1.00455 1.01609 1.21967 0.96203 0.97022 1.01661 1.20669 0.91091 0.93314 0.88742 0.92364 1.21585 0.93842 0.83210 1.01821 1.46170 1.07492 1.10457 1.72686 1.20922 0.81798 0.91718 0.74820 1.90615 1.56707 1.47572 1.51167 1.21524 0.99885 0.91647 0.97246 0.88555 1.22364 0.93024 1.00554 0.99192 1.22441 0.99958 0.98372 0.94169 1.21872 0.90966 1.01653 0.97529 1.21591 0.95497 1.04361 0.90968 1.22992 1.03054 0.97869 0.97831 1.23126 0.99110 0.94112 1.02519 1.42801 1.15258 1.67667 1.13158 1.18954 0.91164 1.25128 0.98350 0.91354 1.25273 0.97895 1.01513 1.00285 1.69848 1.21632 1.44618 1.27226 0.85632 0.80341 0.76376 0.80667 1.21743 1.22888 1.17887 0.92752 0.93911 0.93502 0.92677 0.90371 0.92465 0.90284 0.75542 0.91738 0.90641 0.89995 0.90012 0.91772 0.89531 0.90382 0.87682 0.86487 0.88827 0.80461 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 9.18 71.98 0.66 -4.30 16 2 C -0.13 -3.98 5.61 30.60 0.17 -3.81 16 3 C 0.17 5.74 2.59 44.99 0.12 5.85 16 4 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 5 C 0.12 3.65 5.23 86.38 0.45 4.11 16 6 N -0.72 -21.79 5.23 -463.07 -2.42 -24.21 16 7 C 0.52 15.96 5.52 87.66 0.48 16.44 16 8 O -0.58 -21.30 15.85 -3.03 -0.05 -21.35 16 9 C -0.08 -2.02 3.16 -10.91 -0.03 -2.05 16 10 H 0.10 2.26 8.11 -2.39 -0.02 2.24 16 11 C -0.11 -2.54 6.33 31.72 0.20 -2.33 16 12 C -0.11 -1.86 6.91 31.94 0.22 -1.64 16 13 C -0.08 -1.45 6.58 31.57 0.21 -1.25 16 14 C -0.12 -2.62 2.26 -52.02 -0.12 -2.73 16 15 C -0.18 -3.95 9.63 30.48 0.29 -3.65 16 16 C -0.15 -2.85 10.24 30.48 0.31 -2.54 16 17 N -0.75 -31.03 4.31 -322.93 -1.39 -32.42 16 18 C -0.21 -10.52 8.23 84.03 0.69 -9.83 16 19 H 0.07 3.85 7.55 -2.91 -0.02 3.82 16 20 C -0.06 -3.23 5.50 84.86 0.47 -2.77 16 21 N -0.98 -60.25 13.97 21.65 0.30 -59.95 16 22 Si 0.94 44.00 27.74 68.60 1.90 45.90 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 25 H -0.25 -10.72 6.52 99.48 0.65 -10.07 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 2.01 5.99 -2.39 -0.01 2.00 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.41 12.55 8.11 -92.70 -0.75 11.80 16 34 H 0.06 1.71 6.97 -2.39 -0.02 1.70 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.18 8.11 -2.39 -0.02 1.16 16 40 H 0.08 1.99 7.17 -2.38 -0.02 1.98 16 41 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.36 15.17 5.66 -92.71 -0.52 14.65 16 45 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -64.54 354.70 2.10 -62.43 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: -0.37 Total: 40.10 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 4.13 Total: -10.49 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -3.51 Total: -116.59 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.05 Total: -21.35 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.90 Total: 45.90 kcal Total: -64.54 2.10 -62.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753479568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.811 kcal (2) G-P(sol) polarization free energy of solvation -64.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds