Wall clock time and date at job start Tue Mar 31 2020 01:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47172 * 2 1 4 4 H 1.09004 * 109.47137 * 305.00352 * 3 2 1 5 5 C 1.53002 * 109.47024 * 185.00103 * 3 2 1 6 6 N 1.46499 * 109.46769 * 185.00007 * 5 3 2 7 7 C 1.34779 * 119.99824 * 179.97438 * 6 5 3 8 8 O 1.21286 * 119.99700 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00526 * 180.02562 * 7 6 5 10 10 H 1.09007 * 110.09253 * 25.73848 * 9 7 6 11 11 C 1.54379 * 110.07412 * 147.25182 * 9 7 6 12 12 C 1.54923 * 104.22339 * 142.79448 * 11 9 7 13 13 C 1.54997 * 102.81838 * 322.27904 * 12 11 9 14 14 C 1.53481 * 110.07184 * 264.22942 * 9 7 6 15 15 C 1.52567 * 121.04976 * 96.54784 * 14 9 7 16 16 C 1.52552 * 121.08978 * 24.83580 * 14 9 7 17 17 N 1.46503 * 109.46890 * 65.00111 * 3 2 1 18 18 C 1.36937 * 119.99883 * 274.99638 * 17 3 2 19 19 H 1.07999 * 120.00084 * 0.02562 * 18 17 3 20 20 C 1.38813 * 119.99822 * 180.02562 * 18 17 3 21 21 N 1.31621 * 120.00043 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00012 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47052 * 59.99873 * 22 20 18 24 24 H 1.48493 * 109.47144 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46826 * 299.99712 * 22 20 18 26 26 H 1.09001 * 109.47305 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47356 * 300.00340 * 1 2 3 28 28 H 1.09003 * 109.47075 * 59.99829 * 1 2 3 29 29 H 1.09000 * 109.46727 * 239.99941 * 2 1 3 30 30 H 1.09003 * 109.47075 * 120.00171 * 2 1 3 31 31 H 1.08998 * 109.46965 * 64.99824 * 5 3 2 32 32 H 1.09004 * 109.46690 * 305.00341 * 5 3 2 33 33 H 0.96999 * 120.00392 * 0.02562 * 6 5 3 34 34 H 1.08998 * 110.48217 * 261.47715 * 11 9 7 35 35 H 1.09000 * 110.48158 * 23.97952 * 11 9 7 36 36 H 1.08994 * 110.74280 * 80.61083 * 12 11 9 37 37 H 1.09004 * 110.74253 * 203.77143 * 12 11 9 38 38 H 1.08997 * 110.51418 * 278.92559 * 13 12 11 39 39 H 1.09001 * 110.50890 * 156.20995 * 13 12 11 40 40 H 1.08994 * 117.51144 * 356.97449 * 15 14 9 41 41 H 1.09008 * 117.50708 * 142.05523 * 15 14 9 42 42 H 1.09001 * 117.51248 * 217.88281 * 16 14 9 43 43 H 1.08999 * 117.51110 * 2.93134 * 16 14 9 44 44 H 0.97000 * 119.99687 * 95.00237 * 17 3 2 45 45 H 0.96998 * 119.99551 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5649 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3857 3.0629 -0.0858 8 8 6.1636 2.1481 -0.2564 9 6 5.8984 4.4746 0.0379 10 1 5.1981 5.0780 0.6156 11 6 7.2850 4.4772 0.7166 12 6 8.0655 5.5967 -0.0166 13 6 7.5875 5.4454 -1.4832 14 6 6.0966 5.0871 -1.3554 15 6 5.0242 5.9696 -1.9868 16 6 5.3089 4.5785 -2.5587 17 7 1.6524 2.0974 1.2519 18 6 0.4157 2.6735 1.3688 19 1 -0.2742 2.6446 0.5384 20 6 0.0486 3.2945 2.5548 21 7 0.8892 3.3292 3.5670 22 14 -1.6388 4.0797 2.7147 23 1 -2.6865 3.0471 2.5112 24 1 -1.7834 4.6707 4.0692 25 1 -1.7880 5.1449 1.6908 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8498 1.0376 -1.0960 32 1 3.9954 0.8310 0.6659 33 1 3.4410 3.5483 0.1316 34 1 7.1902 4.7101 1.7771 35 1 7.7778 3.5144 0.5810 36 1 7.7968 6.5766 0.3779 37 1 9.1403 5.4324 0.0609 38 1 8.1318 4.6433 -1.9815 39 1 7.7097 6.3842 -2.0234 40 1 4.0948 6.1062 -1.4340 41 1 5.3577 6.8304 -2.5666 42 1 5.8296 4.5241 -3.5148 43 1 4.5671 3.7996 -2.3823 44 1 2.2720 2.1231 1.9978 45 1 0.6328 3.7635 4.3956 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753479569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:26 Heat of formation + Delta-G solvation = -24.659807 kcal Electronic energy + Delta-G solvation = -22852.104420 eV Core-core repulsion = 19676.512454 eV Total energy + Delta-G solvation = -3175.591966 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.26908 -38.01052 -36.57697 -34.21273 -33.53626 -32.37307 -29.94183 -29.42955 -27.59604 -25.74069 -23.74807 -22.65653 -22.45732 -20.97278 -20.28040 -19.96350 -18.64123 -17.29328 -16.63890 -15.84863 -15.62668 -15.24782 -14.84348 -14.35703 -14.22321 -13.89652 -13.46077 -13.12033 -13.02025 -12.88516 -12.54039 -12.44114 -12.12647 -11.57088 -11.50763 -11.40884 -11.09265 -10.97842 -10.89945 -10.85536 -10.73847 -10.58038 -10.44548 -10.25716 -10.21432 -10.05565 -9.94767 -9.54969 -9.23166 -8.95728 -8.57005 -7.04862 -5.82943 -3.12109 2.99017 3.38454 3.44022 3.44990 3.48872 3.90337 4.35963 4.52804 4.58737 4.83207 4.86181 5.08613 5.21358 5.31021 5.42764 5.44832 5.51808 5.55811 5.60216 5.64976 5.73832 5.81186 5.85231 5.92444 5.95747 5.96501 5.97499 6.02445 6.09445 6.13315 6.16189 6.20731 6.38768 6.42737 6.55339 6.57691 6.61387 6.94461 7.03138 7.23495 7.64289 8.00870 8.34493 8.65141 9.46324 10.01564 10.37627 11.38901 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.004755 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.216873 B = 5887.295309 C = 6563.598443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.164 3.836 4 H 0.052 0.948 5 C 0.114 3.886 6 N -0.712 5.712 7 C 0.520 3.480 8 O -0.553 6.553 9 C -0.078 4.078 10 H 0.093 0.907 11 C -0.111 4.111 12 C -0.119 4.119 13 C -0.085 4.085 14 C -0.116 4.116 15 C -0.166 4.166 16 C -0.170 4.170 17 N -0.721 5.721 18 C -0.238 4.238 19 H 0.072 0.928 20 C -0.010 4.010 21 N -0.930 5.930 22 Si 0.903 3.097 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.286 1.286 26 H 0.032 0.968 27 H 0.084 0.916 28 H 0.039 0.961 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.409 0.591 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.197 3.653 -9.900 14.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.070 0.930 5 C -0.010 4.010 6 N -0.363 5.363 7 C 0.306 3.694 8 O -0.432 6.432 9 C -0.100 4.100 10 H 0.111 0.889 11 C -0.149 4.149 12 C -0.157 4.157 13 C -0.122 4.122 14 C -0.116 4.116 15 C -0.203 4.203 16 C -0.207 4.207 17 N -0.363 5.363 18 C -0.369 4.369 19 H 0.090 0.910 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.734 3.266 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 H 0.051 0.949 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.245 0.755 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.557 3.067 -10.018 14.873 hybrid contribution -1.286 0.687 0.521 1.548 sum 9.271 3.754 -9.497 13.793 Atomic orbital electron populations 1.21769 0.95739 0.99617 1.03220 1.22071 0.96943 0.98468 0.99985 1.20557 0.90012 0.92737 0.91374 0.92958 1.21646 0.95538 0.82948 1.00898 1.46079 1.07194 1.10590 1.72448 1.20391 0.82334 0.90719 0.75917 1.90625 1.56150 1.46353 1.50034 1.21410 0.99262 0.93562 0.95736 0.88866 1.22337 0.93252 1.00383 0.98892 1.22441 0.99531 0.98757 0.94961 1.21856 0.92353 1.00873 0.97155 1.21504 0.93840 1.03655 0.92639 1.23061 0.99687 0.94094 1.03424 1.22994 1.02974 0.97677 0.97095 1.42442 1.16732 1.65847 1.11280 1.19158 0.91966 1.27774 0.97974 0.90998 1.24725 0.98012 1.01577 0.96372 1.69652 1.35253 1.48885 1.03998 0.86342 0.84303 0.79229 0.76745 1.21281 1.21785 1.21319 0.94897 0.89678 0.94148 0.93901 0.92551 0.92089 0.91975 0.75458 0.91196 0.89661 0.91379 0.91342 0.91063 0.91635 0.88325 0.88667 0.88799 0.88466 0.78098 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.18 37.16 0.34 -2.27 16 2 C -0.13 -2.32 5.61 -26.73 -0.15 -2.47 16 3 C 0.16 3.02 2.59 -67.93 -0.18 2.84 16 4 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.11 1.96 5.23 -4.04 -0.02 1.94 16 6 N -0.71 -11.91 5.10 -60.29 -0.31 -12.22 16 7 C 0.52 8.72 5.59 -10.99 -0.06 8.66 16 8 O -0.55 -10.86 15.77 5.55 0.09 -10.77 16 9 C -0.08 -1.08 3.16 -90.80 -0.29 -1.37 16 10 H 0.09 1.27 8.13 -51.93 -0.42 0.84 16 11 C -0.11 -1.41 6.33 -24.99 -0.16 -1.57 16 12 C -0.12 -1.22 6.91 -24.66 -0.17 -1.39 16 13 C -0.09 -0.90 6.58 -25.22 -0.17 -1.06 16 14 C -0.12 -1.40 2.26 -154.26 -0.35 -1.75 16 15 C -0.17 -1.82 10.23 -26.91 -0.28 -2.09 16 16 C -0.17 -2.07 9.63 -26.92 -0.26 -2.33 16 17 N -0.72 -16.32 4.51 -53.42 -0.24 -16.56 16 18 C -0.24 -5.98 7.75 -15.06 -0.12 -6.10 16 19 H 0.07 1.77 7.32 -52.49 -0.38 1.39 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 21 N -0.93 -26.62 13.06 55.49 0.72 -25.90 16 22 Si 0.90 21.36 29.55 -169.99 -5.02 16.34 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 1.80 5.99 -51.93 -0.31 1.49 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.41 6.98 8.13 -40.82 -0.33 6.64 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.23 6.92 -51.93 -0.36 0.87 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 40 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.10 1.32 7.07 -51.93 -0.37 0.96 16 44 H 0.38 9.60 7.80 -40.82 -0.32 9.28 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 357.58 15.07 5.39 5.39 Total: -1.00 -28.56 357.58 -9.28 -37.84 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -7.97 Total: 15.23 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -1.94 Total: -9.35 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.18 Total: -54.68 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.56 -9.28 -37.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753479569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.179 kcal (2) G-P(sol) polarization free energy of solvation -28.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds