Wall clock time and date at job start Tue Mar 31 2020 01:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47172 * 2 1 4 4 H 1.09004 * 109.47137 * 305.00352 * 3 2 1 5 5 C 1.53002 * 109.47024 * 185.00103 * 3 2 1 6 6 N 1.46499 * 109.46769 * 185.00007 * 5 3 2 7 7 C 1.34779 * 119.99824 * 179.97438 * 6 5 3 8 8 O 1.21286 * 119.99700 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00526 * 180.02562 * 7 6 5 10 10 H 1.09007 * 110.09253 * 25.73848 * 9 7 6 11 11 C 1.54379 * 110.07412 * 147.25182 * 9 7 6 12 12 C 1.54923 * 104.22339 * 142.79448 * 11 9 7 13 13 C 1.54997 * 102.81838 * 322.27904 * 12 11 9 14 14 C 1.53481 * 110.07184 * 264.22942 * 9 7 6 15 15 C 1.52567 * 121.04976 * 96.54784 * 14 9 7 16 16 C 1.52552 * 121.08978 * 24.83580 * 14 9 7 17 17 N 1.46503 * 109.46890 * 65.00111 * 3 2 1 18 18 C 1.36937 * 119.99883 * 274.99638 * 17 3 2 19 19 H 1.07999 * 120.00084 * 0.02562 * 18 17 3 20 20 C 1.38813 * 119.99822 * 180.02562 * 18 17 3 21 21 N 1.31621 * 120.00043 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00012 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47052 * 59.99873 * 22 20 18 24 24 H 1.48493 * 109.47144 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46826 * 299.99712 * 22 20 18 26 26 H 1.09001 * 109.47305 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47356 * 300.00340 * 1 2 3 28 28 H 1.09003 * 109.47075 * 59.99829 * 1 2 3 29 29 H 1.09000 * 109.46727 * 239.99941 * 2 1 3 30 30 H 1.09003 * 109.47075 * 120.00171 * 2 1 3 31 31 H 1.08998 * 109.46965 * 64.99824 * 5 3 2 32 32 H 1.09004 * 109.46690 * 305.00341 * 5 3 2 33 33 H 0.96999 * 120.00392 * 0.02562 * 6 5 3 34 34 H 1.08998 * 110.48217 * 261.47715 * 11 9 7 35 35 H 1.09000 * 110.48158 * 23.97952 * 11 9 7 36 36 H 1.08994 * 110.74280 * 80.61083 * 12 11 9 37 37 H 1.09004 * 110.74253 * 203.77143 * 12 11 9 38 38 H 1.08997 * 110.51418 * 278.92559 * 13 12 11 39 39 H 1.09001 * 110.50890 * 156.20995 * 13 12 11 40 40 H 1.08994 * 117.51144 * 356.97449 * 15 14 9 41 41 H 1.09008 * 117.50708 * 142.05523 * 15 14 9 42 42 H 1.09001 * 117.51248 * 217.88281 * 16 14 9 43 43 H 1.08999 * 117.51110 * 2.93134 * 16 14 9 44 44 H 0.97000 * 119.99687 * 95.00237 * 17 3 2 45 45 H 0.96998 * 119.99551 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5649 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3857 3.0629 -0.0858 8 8 6.1636 2.1481 -0.2564 9 6 5.8984 4.4746 0.0379 10 1 5.1981 5.0780 0.6156 11 6 7.2850 4.4772 0.7166 12 6 8.0655 5.5967 -0.0166 13 6 7.5875 5.4454 -1.4832 14 6 6.0966 5.0871 -1.3554 15 6 5.0242 5.9696 -1.9868 16 6 5.3089 4.5785 -2.5587 17 7 1.6524 2.0974 1.2519 18 6 0.4157 2.6735 1.3688 19 1 -0.2742 2.6446 0.5384 20 6 0.0486 3.2945 2.5548 21 7 0.8892 3.3292 3.5670 22 14 -1.6388 4.0797 2.7147 23 1 -2.6865 3.0471 2.5112 24 1 -1.7834 4.6707 4.0692 25 1 -1.7880 5.1449 1.6908 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8498 1.0376 -1.0960 32 1 3.9954 0.8310 0.6659 33 1 3.4410 3.5483 0.1316 34 1 7.1902 4.7101 1.7771 35 1 7.7778 3.5144 0.5810 36 1 7.7968 6.5766 0.3779 37 1 9.1403 5.4324 0.0609 38 1 8.1318 4.6433 -1.9815 39 1 7.7097 6.3842 -2.0234 40 1 4.0948 6.1062 -1.4340 41 1 5.3577 6.8304 -2.5666 42 1 5.8296 4.5241 -3.5148 43 1 4.5671 3.7996 -2.3823 44 1 2.2720 2.1231 1.9978 45 1 0.6328 3.7635 4.3956 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753479569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:25 Heat of formation + Delta-G solvation = -41.006372 kcal Electronic energy + Delta-G solvation = -22852.813260 eV Core-core repulsion = 19676.512454 eV Total energy + Delta-G solvation = -3176.300806 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.45243 -39.22553 -38.11855 -35.36664 -34.89162 -34.12780 -31.54520 -30.74554 -29.01871 -26.74178 -25.54375 -24.11527 -23.39140 -22.09517 -21.63283 -21.24078 -19.85298 -19.11332 -17.93013 -17.07507 -16.99132 -16.64564 -15.98503 -15.87795 -15.51535 -15.35852 -14.92800 -14.59565 -14.43589 -14.15462 -13.83010 -13.60598 -13.41976 -12.99126 -12.79782 -12.74359 -12.56351 -12.40970 -12.36082 -12.14542 -11.95949 -11.89413 -11.81047 -11.64216 -11.52634 -11.34263 -11.16068 -11.09449 -10.87431 -10.39408 -9.99846 -8.97824 -7.87408 -5.14662 1.50857 1.51877 1.57355 1.66168 2.25883 2.59993 2.87551 3.41175 3.46341 3.64326 3.84270 3.88265 3.91371 3.95690 4.10497 4.27750 4.34182 4.37287 4.46397 4.49937 4.54952 4.68437 4.73347 4.77650 4.80392 4.86455 4.92719 5.01135 5.07421 5.08162 5.12414 5.15814 5.18385 5.19836 5.23930 5.27998 5.45069 5.49925 5.58456 5.61374 5.70971 6.32517 6.62156 7.28227 7.40483 8.11826 8.37302 9.35411 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.004755 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.216873 B = 5887.295309 C = 6563.598443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.166 3.834 4 H 0.058 0.942 5 C 0.123 3.877 6 N -0.711 5.711 7 C 0.519 3.481 8 O -0.585 6.585 9 C -0.079 4.079 10 H 0.093 0.907 11 C -0.114 4.114 12 C -0.112 4.112 13 C -0.082 4.082 14 C -0.124 4.124 15 C -0.151 4.151 16 C -0.180 4.180 17 N -0.726 5.726 18 C -0.218 4.218 19 H 0.079 0.921 20 C -0.071 4.071 21 N -0.968 5.968 22 Si 0.959 3.041 23 H -0.283 1.283 24 H -0.303 1.303 25 H -0.278 1.278 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.408 0.592 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.118 0.882 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.372 0.628 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.351 4.504 -11.769 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C 0.058 3.942 4 H 0.076 0.924 5 C -0.002 4.002 6 N -0.361 5.361 7 C 0.307 3.693 8 O -0.466 6.466 9 C -0.100 4.100 10 H 0.111 0.889 11 C -0.152 4.152 12 C -0.149 4.149 13 C -0.119 4.119 14 C -0.125 4.125 15 C -0.187 4.187 16 C -0.217 4.217 17 N -0.367 5.367 18 C -0.349 4.349 19 H 0.097 0.903 20 C -0.264 4.264 21 N -0.620 5.620 22 Si 0.790 3.210 23 H -0.209 1.209 24 H -0.230 1.230 25 H -0.204 1.204 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.244 0.756 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.136 0.864 42 H 0.124 0.876 43 H 0.096 0.904 44 H 0.204 0.796 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.695 3.904 -11.940 16.499 hybrid contribution -1.323 0.322 1.027 1.706 sum 9.372 4.226 -10.913 14.993 Atomic orbital electron populations 1.21692 0.95856 1.00596 1.01800 1.21994 0.96721 0.97401 1.00938 1.20687 0.90810 0.93230 0.89509 0.92438 1.21529 0.94450 0.83194 1.01040 1.46092 1.07397 1.10313 1.72301 1.20934 0.81847 0.91736 0.74794 1.90603 1.56753 1.47626 1.51570 1.21484 0.99684 0.91492 0.97383 0.88869 1.22353 0.92875 1.00501 0.99439 1.22440 0.99975 0.98164 0.94307 1.21875 0.90861 1.01706 0.97501 1.21595 0.95265 1.04230 0.91403 1.23119 0.98891 0.94137 1.02593 1.23002 1.02934 0.98082 0.97722 1.42551 1.15784 1.66103 1.12261 1.19456 0.92473 1.25474 0.97528 0.90271 1.25366 1.00953 1.03448 0.96593 1.69803 1.36905 1.50930 1.04327 0.85418 0.81022 0.78516 0.76048 1.20949 1.23021 1.20432 0.92863 0.93293 0.93144 0.90785 0.93710 0.90652 0.93480 0.75596 0.90941 0.91777 0.90051 0.89925 0.91729 0.89383 0.88939 0.86352 0.87557 0.90411 0.79632 0.94415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 9.18 71.98 0.66 -4.16 16 2 C -0.13 -4.30 5.61 30.59 0.17 -4.13 16 3 C 0.17 5.99 2.59 44.99 0.12 6.11 16 4 H 0.06 2.05 8.08 -2.38 -0.02 2.03 16 5 C 0.12 4.17 5.23 86.38 0.45 4.62 16 6 N -0.71 -23.91 5.10 -463.05 -2.36 -26.27 16 7 C 0.52 17.54 5.59 87.66 0.49 18.03 16 8 O -0.58 -23.29 15.77 -3.05 -0.05 -23.34 16 9 C -0.08 -2.16 3.16 -10.91 -0.03 -2.19 16 10 H 0.09 2.51 8.13 -2.38 -0.02 2.49 16 11 C -0.11 -2.84 6.33 31.72 0.20 -2.64 16 12 C -0.11 -2.04 6.91 31.93 0.22 -1.82 16 13 C -0.08 -1.54 6.58 31.57 0.21 -1.34 16 14 C -0.12 -2.82 2.26 -52.02 -0.12 -2.94 16 15 C -0.15 -2.98 10.23 30.48 0.31 -2.66 16 16 C -0.18 -4.13 9.63 30.47 0.29 -3.84 16 17 N -0.73 -32.99 4.51 -322.93 -1.46 -34.44 16 18 C -0.22 -10.90 7.75 84.03 0.65 -10.24 16 19 H 0.08 3.81 7.32 -2.91 -0.02 3.79 16 20 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 21 N -0.97 -56.64 13.06 21.65 0.28 -56.36 16 22 Si 0.96 44.17 29.55 68.60 2.03 46.19 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 2.02 5.99 -2.38 -0.01 2.00 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.41 14.00 8.13 -92.71 -0.75 13.25 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.88 6.92 -2.39 -0.02 1.86 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.27 8.11 -2.39 -0.02 1.26 16 40 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.08 2.08 7.07 -2.39 -0.02 2.06 16 44 H 0.37 18.91 7.80 -92.71 -0.72 18.19 16 45 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -61.54 357.58 2.03 -59.51 By element: Atomic # 1 Polarization: 45.79 SS G_CDS: -0.51 Total: 45.29 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 4.09 Total: -10.58 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -3.53 Total: -117.07 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.05 Total: -23.34 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -61.54 2.03 -59.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753479569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.505 kcal (2) G-P(sol) polarization free energy of solvation -61.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds