Wall clock time and date at job start Tue Mar 31 2020 01:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47356 * 2 1 4 4 H 1.09000 * 109.47017 * 54.99628 * 3 2 1 5 5 C 1.52997 * 109.47404 * 174.99986 * 3 2 1 6 6 N 1.46505 * 109.47212 * 174.99693 * 5 3 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 3 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 6 11 11 H 1.09004 * 115.54945 * 29.33169 * 10 9 7 12 12 C 1.53007 * 117.49961 * 243.62376 * 10 9 7 13 13 C 1.53002 * 59.99905 * 252.51021 * 12 10 9 14 14 H 1.08988 * 117.52115 * 107.48356 * 13 12 10 15 15 C 1.53005 * 117.49476 * 252.51118 * 13 12 10 16 16 C 1.53005 * 117.49533 * 197.24491 * 15 13 12 17 17 C 1.52999 * 59.99961 * 252.50973 * 16 15 13 18 18 N 1.46500 * 109.46849 * 295.00050 * 3 2 1 19 19 C 1.36939 * 120.00440 * 84.99968 * 18 3 2 20 20 H 1.08007 * 119.99440 * 359.97438 * 19 18 3 21 21 C 1.38814 * 120.00407 * 180.02562 * 19 18 3 22 22 N 1.31615 * 119.99666 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99989 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47253 * 0.02562 * 23 21 19 25 25 H 1.48509 * 109.46971 * 119.99699 * 23 21 19 26 26 H 1.48500 * 109.47007 * 239.99838 * 23 21 19 27 27 H 1.09006 * 109.47194 * 300.00318 * 1 2 3 28 28 H 1.08994 * 109.47345 * 60.00428 * 1 2 3 29 29 H 1.09006 * 109.47459 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46705 * 239.99474 * 2 1 3 31 31 H 1.09004 * 109.46936 * 119.99951 * 2 1 3 32 32 H 1.09002 * 109.47153 * 54.99686 * 5 3 2 33 33 H 1.09001 * 109.46832 * 294.99876 * 5 3 2 34 34 H 0.96996 * 119.99606 * 0.02562 * 6 5 3 35 35 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 36 36 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 37 37 H 1.08995 * 117.49506 * 0.02562 * 12 10 9 38 38 H 1.08997 * 117.49509 * 145.01835 * 12 10 9 39 39 H 1.08997 * 115.55199 * 342.94907 * 15 13 12 40 40 H 1.08998 * 117.49706 * 359.97438 * 16 15 13 41 41 H 1.08996 * 117.49947 * 145.02154 * 16 15 13 42 42 H 1.08998 * 117.49893 * 252.51249 * 17 16 15 43 43 H 1.09003 * 117.52034 * 107.48160 * 17 16 15 44 44 H 0.96998 * 120.00051 * 264.99732 * 18 3 2 45 45 H 0.97000 * 119.99759 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 7 4.0631 2.8168 0.0059 7 6 5.3857 3.0629 0.0868 8 8 6.1634 2.1483 0.2583 9 6 5.8982 4.4746 -0.0371 10 6 7.4230 4.4765 0.0887 11 1 7.9238 3.5694 -0.2498 12 6 8.0327 5.2179 1.2803 13 6 8.1481 5.8064 -0.1273 14 1 7.5390 6.6798 -0.3596 15 6 9.5209 5.7611 -0.8015 16 6 9.7489 6.6814 -2.0023 17 6 9.5961 5.1736 -2.2123 18 7 1.6525 2.0974 -1.2518 19 6 0.4157 2.6734 -1.3689 20 1 -0.2743 2.6445 -0.5384 21 6 0.0482 3.2935 -2.5552 22 7 0.8888 3.3282 -3.5674 23 14 -1.6392 4.0786 -2.7151 24 1 -2.3884 3.9048 -1.4448 25 1 -1.4858 5.5272 -3.0044 26 1 -2.3846 3.4288 -3.8229 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.9954 0.8310 -0.6659 33 1 3.8498 1.0376 1.0961 34 1 3.4410 3.5483 -0.1309 35 1 5.6137 4.8807 -1.0078 36 1 5.4673 5.0884 0.7540 37 1 7.3474 5.7039 1.9746 38 1 8.9346 4.7985 1.7259 39 1 10.3657 5.5825 -0.1363 40 1 8.9208 7.3188 -2.3122 41 1 10.7438 7.1087 -2.1273 42 1 10.4905 4.6089 -2.4752 43 1 8.6676 4.8190 -2.6599 44 1 2.2719 2.1230 -1.9978 45 1 0.6322 3.7619 -4.3962 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753484819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:01 Heat of formation + Delta-G solvation = 2.355751 kcal Electronic energy + Delta-G solvation = -21739.312825 eV Core-core repulsion = 18564.892341 eV Total energy + Delta-G solvation = -3174.420484 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.61212 -38.43583 -36.69991 -35.42614 -33.63571 -32.38637 -30.06651 -29.51128 -27.43931 -23.94166 -23.59610 -22.65640 -22.48271 -21.19254 -20.14882 -19.83669 -19.51520 -17.39873 -16.64700 -15.78163 -15.69882 -15.45567 -14.89889 -14.79783 -14.06416 -13.96068 -13.55830 -13.23085 -13.13245 -13.01466 -12.61349 -12.33720 -11.91580 -11.77039 -11.54568 -11.42761 -11.26030 -10.98499 -10.93764 -10.91427 -10.74509 -10.70830 -10.43458 -10.20092 -10.01089 -9.91039 -9.64636 -9.55877 -9.35980 -8.97690 -8.57716 -7.05387 -5.83919 -3.12978 3.01836 3.37195 3.39577 3.44162 3.45998 3.70120 3.89144 4.46846 4.52281 4.69842 4.76572 4.92972 4.96311 5.18968 5.19674 5.37191 5.41800 5.42527 5.52219 5.52594 5.56492 5.66341 5.72852 5.78803 5.80866 5.92348 5.96017 5.98015 5.99955 6.05806 6.12505 6.18323 6.38246 6.42585 6.55276 6.57649 6.61071 6.93884 7.02920 7.23047 7.64759 7.99836 8.33559 8.64038 9.45587 10.00874 10.36881 11.38061 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016623 B = 0.003617 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.042773 B = 7739.875332 C = 8878.821765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.115 3.885 6 N -0.714 5.714 7 C 0.512 3.488 8 O -0.555 6.555 9 C -0.113 4.113 10 C -0.124 4.124 11 H 0.119 0.881 12 C -0.170 4.170 13 C -0.125 4.125 14 H 0.105 0.895 15 C -0.123 4.123 16 C -0.179 4.179 17 C -0.176 4.176 18 N -0.722 5.722 19 C -0.237 4.237 20 H 0.073 0.927 21 C -0.011 4.011 22 N -0.929 5.929 23 Si 0.902 3.098 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.032 0.968 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.410 0.590 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.805 3.952 7.436 15.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.010 4.010 6 N -0.365 5.365 7 C 0.299 3.701 8 O -0.434 6.434 9 C -0.153 4.153 10 C -0.143 4.143 11 H 0.137 0.863 12 C -0.207 4.207 13 C -0.143 4.143 14 H 0.123 0.877 15 C -0.141 4.141 16 C -0.216 4.216 17 C -0.213 4.213 18 N -0.364 5.364 19 C -0.368 4.368 20 H 0.091 0.909 21 C -0.208 4.208 22 N -0.577 5.577 23 Si 0.733 3.267 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.246 0.754 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.219 0.781 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.162 3.371 7.581 15.559 hybrid contribution -1.140 0.745 -0.540 1.465 sum 12.022 4.116 7.041 14.528 Atomic orbital electron populations 1.21771 0.95749 0.99624 1.03225 1.22069 0.96943 0.98462 1.00012 1.20560 0.90042 0.92745 0.91363 0.92911 1.21642 0.95507 0.82893 1.00934 1.45996 1.07225 1.10688 1.72615 1.20478 0.82364 0.91054 0.76238 1.90642 1.56081 1.46656 1.50015 1.21226 0.94673 0.94956 1.04411 1.22150 0.93187 0.96327 1.02591 0.86306 1.23140 1.03124 1.03682 0.90786 1.21889 0.96051 0.97408 0.98939 0.87662 1.21727 0.96733 1.05242 0.90434 1.22976 1.02682 0.93402 1.02496 1.22977 1.03447 0.95812 0.99081 1.42466 1.16766 1.65845 1.11313 1.19257 0.91933 1.27586 0.97975 0.90870 1.24729 0.98041 1.01622 0.96372 1.69670 1.35120 1.48985 1.03971 0.86199 0.84141 0.78866 0.77466 1.20552 1.21942 1.21930 0.94135 0.89686 0.94880 0.92540 0.93866 0.91972 0.92033 0.75381 0.88358 0.89045 0.88853 0.88886 0.87901 0.88737 0.89051 0.89004 0.88381 0.78097 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.18 37.16 0.34 -2.26 16 2 C -0.13 -2.31 5.61 -26.73 -0.15 -2.46 16 3 C 0.16 3.00 2.59 -67.94 -0.18 2.82 16 4 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.11 1.96 5.23 -4.04 -0.02 1.94 16 6 N -0.71 -11.73 5.39 -60.29 -0.32 -12.05 16 7 C 0.51 8.33 7.83 -10.99 -0.09 8.24 16 8 O -0.55 -10.72 15.56 5.56 0.09 -10.63 16 9 C -0.11 -1.42 5.98 -27.88 -0.17 -1.59 16 10 C -0.12 -1.52 5.06 -90.62 -0.46 -1.97 16 11 H 0.12 1.71 7.30 -51.93 -0.38 1.33 16 12 C -0.17 -1.77 9.90 -26.73 -0.26 -2.03 16 13 C -0.12 -1.28 5.59 -90.61 -0.51 -1.79 16 14 H 0.11 1.03 8.14 -51.94 -0.42 0.61 16 15 C -0.12 -1.20 5.87 -90.61 -0.53 -1.73 16 16 C -0.18 -1.58 10.25 -26.73 -0.27 -1.86 16 17 C -0.18 -1.73 10.18 -26.73 -0.27 -2.01 16 18 N -0.72 -16.29 4.51 -53.43 -0.24 -16.53 16 19 C -0.24 -5.94 7.75 -15.06 -0.12 -6.05 16 20 H 0.07 1.81 7.32 -52.48 -0.38 1.42 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -26.52 13.06 55.49 0.72 -25.79 16 23 Si 0.90 21.29 29.55 -169.99 -5.02 16.26 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.78 5.99 -51.93 -0.31 1.47 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.41 6.75 8.14 -40.82 -0.33 6.42 16 35 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.09 0.99 7.88 -51.93 -0.41 0.58 16 37 H 0.09 0.88 8.03 -51.93 -0.42 0.47 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.38 9.55 7.80 -40.82 -0.32 9.23 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -28.74 368.75 -10.02 -38.76 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -8.02 Total: 15.58 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -2.78 Total: -11.16 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.16 Total: -54.37 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.74 -10.02 -38.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753484819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.117 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds