Wall clock time and date at job start Tue Mar 31 2020 01:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47356 * 2 1 4 4 H 1.09000 * 109.47017 * 54.99628 * 3 2 1 5 5 C 1.52997 * 109.47404 * 174.99986 * 3 2 1 6 6 N 1.46505 * 109.47212 * 174.99693 * 5 3 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 3 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 6 11 11 H 1.09004 * 115.54945 * 29.33169 * 10 9 7 12 12 C 1.53007 * 117.49961 * 243.62376 * 10 9 7 13 13 C 1.53002 * 59.99905 * 252.51021 * 12 10 9 14 14 H 1.08988 * 117.52115 * 107.48356 * 13 12 10 15 15 C 1.53005 * 117.49476 * 252.51118 * 13 12 10 16 16 C 1.53005 * 117.49533 * 197.24491 * 15 13 12 17 17 C 1.52999 * 59.99961 * 252.50973 * 16 15 13 18 18 N 1.46500 * 109.46849 * 295.00050 * 3 2 1 19 19 C 1.36939 * 120.00440 * 84.99968 * 18 3 2 20 20 H 1.08007 * 119.99440 * 359.97438 * 19 18 3 21 21 C 1.38814 * 120.00407 * 180.02562 * 19 18 3 22 22 N 1.31615 * 119.99666 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99989 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47253 * 0.02562 * 23 21 19 25 25 H 1.48509 * 109.46971 * 119.99699 * 23 21 19 26 26 H 1.48500 * 109.47007 * 239.99838 * 23 21 19 27 27 H 1.09006 * 109.47194 * 300.00318 * 1 2 3 28 28 H 1.08994 * 109.47345 * 60.00428 * 1 2 3 29 29 H 1.09006 * 109.47459 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46705 * 239.99474 * 2 1 3 31 31 H 1.09004 * 109.46936 * 119.99951 * 2 1 3 32 32 H 1.09002 * 109.47153 * 54.99686 * 5 3 2 33 33 H 1.09001 * 109.46832 * 294.99876 * 5 3 2 34 34 H 0.96996 * 119.99606 * 0.02562 * 6 5 3 35 35 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 36 36 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 37 37 H 1.08995 * 117.49506 * 0.02562 * 12 10 9 38 38 H 1.08997 * 117.49509 * 145.01835 * 12 10 9 39 39 H 1.08997 * 115.55199 * 342.94907 * 15 13 12 40 40 H 1.08998 * 117.49706 * 359.97438 * 16 15 13 41 41 H 1.08996 * 117.49947 * 145.02154 * 16 15 13 42 42 H 1.08998 * 117.49893 * 252.51249 * 17 16 15 43 43 H 1.09003 * 117.52034 * 107.48160 * 17 16 15 44 44 H 0.96998 * 120.00051 * 264.99732 * 18 3 2 45 45 H 0.97000 * 119.99759 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 7 4.0631 2.8168 0.0059 7 6 5.3857 3.0629 0.0868 8 8 6.1634 2.1483 0.2583 9 6 5.8982 4.4746 -0.0371 10 6 7.4230 4.4765 0.0887 11 1 7.9238 3.5694 -0.2498 12 6 8.0327 5.2179 1.2803 13 6 8.1481 5.8064 -0.1273 14 1 7.5390 6.6798 -0.3596 15 6 9.5209 5.7611 -0.8015 16 6 9.7489 6.6814 -2.0023 17 6 9.5961 5.1736 -2.2123 18 7 1.6525 2.0974 -1.2518 19 6 0.4157 2.6734 -1.3689 20 1 -0.2743 2.6445 -0.5384 21 6 0.0482 3.2935 -2.5552 22 7 0.8888 3.3282 -3.5674 23 14 -1.6392 4.0786 -2.7151 24 1 -2.3884 3.9048 -1.4448 25 1 -1.4858 5.5272 -3.0044 26 1 -2.3846 3.4288 -3.8229 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.9954 0.8310 -0.6659 33 1 3.8498 1.0376 1.0961 34 1 3.4410 3.5483 -0.1309 35 1 5.6137 4.8807 -1.0078 36 1 5.4673 5.0884 0.7540 37 1 7.3474 5.7039 1.9746 38 1 8.9346 4.7985 1.7259 39 1 10.3657 5.5825 -0.1363 40 1 8.9208 7.3188 -2.3122 41 1 10.7438 7.1087 -2.1273 42 1 10.4905 4.6089 -2.4752 43 1 8.6676 4.8190 -2.6599 44 1 2.2719 2.1230 -1.9978 45 1 0.6322 3.7619 -4.3962 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753484819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:00 Heat of formation + Delta-G solvation = -13.472827 kcal Electronic energy + Delta-G solvation = -21739.999203 eV Core-core repulsion = 18564.892341 eV Total energy + Delta-G solvation = -3175.106862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.84447 -39.39185 -38.22711 -36.28641 -35.17995 -34.12709 -31.55894 -30.93422 -28.87992 -25.60011 -24.59552 -24.02470 -23.26504 -22.22498 -21.60693 -20.86823 -20.63235 -19.22649 -17.94678 -17.07200 -16.99692 -16.49452 -16.29288 -15.93935 -15.70359 -15.18337 -14.84575 -14.63521 -14.45469 -14.36225 -13.94544 -13.73852 -13.15240 -12.96816 -12.79349 -12.74819 -12.52069 -12.35919 -12.32541 -12.14982 -12.06050 -11.86185 -11.75059 -11.61627 -11.50178 -11.33372 -10.97325 -10.81687 -10.71728 -10.30761 -9.96119 -8.96840 -7.86974 -5.14001 1.49921 1.52547 1.60030 1.72338 2.29816 2.60547 2.72272 3.09427 3.47131 3.64960 3.80595 3.86243 3.91897 3.98094 4.05274 4.16940 4.26244 4.35914 4.40037 4.48728 4.54006 4.57464 4.58302 4.71278 4.76915 4.81701 4.85451 4.88722 4.95447 5.05002 5.10418 5.14493 5.21470 5.26901 5.29243 5.32009 5.43612 5.51489 5.60822 5.63458 5.72409 6.33462 6.66770 7.32592 7.41388 8.12962 8.38130 9.36216 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016623 B = 0.003617 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.042773 B = 7739.875332 C = 8878.821765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.166 3.834 4 H 0.059 0.941 5 C 0.122 3.878 6 N -0.713 5.713 7 C 0.509 3.491 8 O -0.588 6.588 9 C -0.104 4.104 10 C -0.144 4.144 11 H 0.091 0.909 12 C -0.161 4.161 13 C -0.114 4.114 14 H 0.114 0.886 15 C -0.131 4.131 16 C -0.167 4.167 17 C -0.189 4.189 18 N -0.728 5.728 19 C -0.215 4.215 20 H 0.080 0.920 21 C -0.072 4.072 22 N -0.968 5.968 23 Si 0.958 3.042 24 H -0.266 1.266 25 H -0.298 1.298 26 H -0.303 1.303 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.411 0.589 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.372 0.628 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.861 4.687 9.259 16.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.077 0.923 5 C -0.003 4.003 6 N -0.364 5.364 7 C 0.297 3.703 8 O -0.470 6.470 9 C -0.143 4.143 10 C -0.162 4.162 11 H 0.110 0.890 12 C -0.198 4.198 13 C -0.132 4.132 14 H 0.132 0.868 15 C -0.149 4.149 16 C -0.204 4.204 17 C -0.226 4.226 18 N -0.368 5.368 19 C -0.346 4.346 20 H 0.098 0.902 21 C -0.264 4.264 22 N -0.620 5.620 23 Si 0.789 3.211 24 H -0.190 1.190 25 H -0.225 1.225 26 H -0.231 1.231 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.247 0.753 35 H 0.120 0.880 36 H 0.134 0.866 37 H 0.125 0.875 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.204 0.796 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.204 4.095 9.457 16.750 hybrid contribution -1.115 0.422 -1.030 1.576 sum 12.089 4.517 8.427 15.413 Atomic orbital electron populations 1.21699 0.95893 1.00599 1.01827 1.21998 0.96705 0.97473 1.00951 1.20698 0.90911 0.93188 0.89504 0.92261 1.21523 0.94354 0.83279 1.01097 1.46021 1.07507 1.10401 1.72506 1.21107 0.81822 0.92244 0.75093 1.90625 1.56736 1.48061 1.51545 1.21222 0.95013 0.92660 1.05426 1.21992 0.92800 0.96404 1.05026 0.89032 1.23236 1.03191 1.02642 0.90738 1.21943 0.96041 0.96301 0.98874 0.86786 1.21814 0.96728 1.05757 0.90552 1.23055 1.03620 0.92584 1.01168 1.22981 1.03071 0.97062 0.99518 1.42587 1.15813 1.66075 1.12344 1.19540 0.92437 1.25187 0.97475 0.90178 1.25359 1.00918 1.03536 0.96631 1.69812 1.36767 1.51055 1.04331 0.85284 0.80952 0.77434 0.77386 1.19022 1.22542 1.23110 0.93131 0.93255 0.92881 0.93753 0.90739 0.93569 0.90523 0.75287 0.88027 0.86637 0.87451 0.88526 0.87161 0.88559 0.87509 0.88348 0.89951 0.79601 0.94454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 9.18 71.98 0.66 -4.13 16 2 C -0.13 -4.26 5.61 30.59 0.17 -4.09 16 3 C 0.17 5.86 2.59 44.99 0.12 5.98 16 4 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 5 C 0.12 4.06 5.23 86.38 0.45 4.51 16 6 N -0.71 -23.00 5.39 -463.06 -2.49 -25.49 16 7 C 0.51 16.39 7.83 87.66 0.69 17.08 16 8 O -0.59 -22.89 15.56 -3.03 -0.05 -22.94 16 9 C -0.10 -2.52 5.98 29.85 0.18 -2.34 16 10 C -0.14 -3.42 5.06 -10.79 -0.05 -3.48 16 11 H 0.09 2.71 7.30 -2.39 -0.02 2.70 16 12 C -0.16 -3.05 9.90 30.60 0.30 -2.75 16 13 C -0.11 -2.17 5.59 -10.79 -0.06 -2.23 16 14 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 15 C -0.13 -2.37 5.87 -10.79 -0.06 -2.43 16 16 C -0.17 -2.70 10.25 30.60 0.31 -2.39 16 17 C -0.19 -3.65 10.18 30.59 0.31 -3.34 16 18 N -0.73 -32.65 4.51 -322.95 -1.46 -34.10 16 19 C -0.21 -10.64 7.75 84.03 0.65 -9.99 16 20 H 0.08 3.83 7.32 -2.91 -0.02 3.81 16 21 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 22 N -0.97 -56.27 13.06 21.65 0.28 -55.99 16 23 Si 0.96 43.93 29.55 68.60 2.03 45.96 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 26 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 27 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.05 2.01 5.99 -2.39 -0.01 1.99 16 29 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.41 13.21 8.14 -92.71 -0.75 12.45 16 35 H 0.10 2.40 8.14 -2.39 -0.02 2.39 16 36 H 0.12 2.24 7.88 -2.39 -0.02 2.22 16 37 H 0.11 1.74 8.03 -2.39 -0.02 1.72 16 38 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 39 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 44 H 0.37 18.70 7.80 -92.71 -0.72 17.97 16 45 H 0.25 14.15 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -61.72 368.75 1.94 -59.78 By element: Atomic # 1 Polarization: 46.30 SS G_CDS: -0.51 Total: 45.79 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 4.13 Total: -13.01 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -3.67 Total: -115.59 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.05 Total: -22.94 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -61.72 1.94 -59.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753484819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.310 kcal (2) G-P(sol) polarization free energy of solvation -61.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds