Wall clock time and date at job start Tue Mar 31 2020 01:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99687 * 2 1 4 4 H 1.09002 * 109.47489 * 359.97438 * 3 2 1 5 5 C 1.53006 * 109.47300 * 119.99865 * 3 2 1 6 6 C 1.52997 * 109.46822 * 294.99983 * 5 3 2 7 7 C 1.53000 * 109.47204 * 239.99686 * 3 2 1 8 8 C 1.50703 * 109.46912 * 65.00158 * 7 3 2 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 3 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 3 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.47129 * 34.99449 * 11 10 8 13 13 C 1.52997 * 109.47387 * 154.99671 * 11 10 8 14 14 N 1.46506 * 109.47130 * 305.00258 * 13 11 10 15 15 C 1.36928 * 119.99837 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00710 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99946 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00486 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99841 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.46741 * 89.99975 * 19 17 15 21 21 H 1.48500 * 109.47083 * 210.00033 * 19 17 15 22 22 H 1.48497 * 109.47150 * 329.99760 * 19 17 15 23 23 C 1.53002 * 109.46916 * 274.99861 * 11 10 8 24 24 C 1.52993 * 117.50092 * 128.74548 * 23 11 10 25 25 C 1.52999 * 117.49909 * 60.08455 * 23 11 10 26 26 H 1.08004 * 120.00131 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00226 * 180.02562 * 1 2 3 28 28 H 1.07996 * 119.99885 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.46746 * 54.99744 * 5 3 2 30 30 H 1.08998 * 109.47205 * 174.99912 * 5 3 2 31 31 H 1.08998 * 109.47289 * 59.99980 * 6 5 3 32 32 H 1.09002 * 109.46611 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47264 * 299.99443 * 6 5 3 34 34 H 1.09002 * 109.47398 * 185.00236 * 7 3 2 35 35 H 1.09001 * 109.47194 * 305.00417 * 7 3 2 36 36 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 37 37 H 1.09008 * 109.46968 * 64.99750 * 13 11 10 38 38 H 1.08998 * 109.47425 * 184.99929 * 13 11 10 39 39 H 0.96994 * 119.99955 * 359.97438 * 14 13 11 40 40 H 0.96995 * 120.00189 * 180.02562 * 18 17 15 41 41 H 1.08998 * 115.54487 * 274.41632 * 23 11 10 42 42 H 1.09004 * 117.49660 * 0.02562 * 24 23 11 43 43 H 1.09003 * 117.49876 * 145.01319 * 24 23 11 44 44 H 1.08998 * 117.49703 * 214.98008 * 25 23 11 45 45 H 1.08993 * 117.50082 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3863 1.2493 6 6 2.0563 1.4308 2.4953 7 6 2.9431 1.3862 -1.2492 8 6 2.0697 1.4300 -2.4766 9 8 0.8626 1.3990 -2.3633 10 7 2.6301 1.5027 -3.7002 11 6 1.7811 1.5459 -4.8933 12 1 0.8730 2.1071 -4.6729 13 6 2.5385 2.2289 -6.0338 14 7 2.9960 3.5495 -5.5942 15 6 3.7020 4.3499 -6.4520 16 1 3.9212 4.0080 -7.4528 17 6 4.1351 5.6013 -6.0358 18 7 4.8132 6.3710 -6.8604 19 14 3.7553 6.1931 -4.3051 20 1 4.8514 5.7840 -3.3905 21 1 3.6354 7.6732 -4.3032 22 1 2.4773 5.5924 -3.8459 23 6 1.4117 0.1203 -5.3081 24 6 -0.0693 -0.1872 -5.5378 25 6 0.6426 -0.7327 -4.2973 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 3.5905 0.5106 1.2952 30 1 3.5539 2.2880 1.2056 31 1 1.4455 0.5291 2.5390 32 1 2.6830 1.4882 3.3853 33 1 1.4088 2.3065 2.4494 34 1 3.5540 2.2879 -1.2055 35 1 3.5906 0.5105 -1.2951 36 1 3.5956 1.5272 -3.7907 37 1 3.3989 1.6210 -6.3139 38 1 1.8775 2.3409 -6.8932 39 1 2.7989 3.8567 -4.6956 40 1 5.1161 7.2453 -6.5694 41 1 2.1357 -0.3860 -5.9464 42 1 -0.7805 0.6262 -5.3937 43 1 -0.3197 -0.8962 -6.3270 44 1 0.8604 -1.8004 -4.2709 45 1 0.4002 -0.2785 -3.3367 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754449147.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:15 Heat of formation + Delta-G solvation = 5.072293 kcal Electronic energy + Delta-G solvation = -22709.639328 eV Core-core repulsion = 19535.336643 eV Total energy + Delta-G solvation = -3174.302685 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.01480 -37.77886 -36.37161 -35.14750 -33.44275 -31.81484 -31.44724 -30.38414 -28.31060 -24.88899 -23.76673 -22.16783 -21.75600 -21.32148 -20.62291 -20.05078 -19.53412 -17.80312 -16.69180 -16.14883 -15.66473 -15.08085 -14.93538 -14.67683 -14.40192 -14.09933 -13.85702 -13.58807 -13.23289 -12.97022 -12.77876 -12.30679 -12.24261 -11.98894 -11.88137 -11.47194 -11.34942 -11.17755 -11.15705 -11.02632 -10.90423 -10.89558 -10.54828 -10.22903 -10.14887 -9.95215 -9.64134 -9.62291 -9.06917 -8.94635 -8.67528 -7.29345 -5.81195 -3.17322 2.44731 2.88689 3.31741 3.35241 3.38375 3.42331 4.10131 4.55011 4.66710 4.71611 4.76616 4.84818 5.11555 5.14092 5.16982 5.23697 5.28318 5.35049 5.40624 5.46031 5.47417 5.60708 5.67998 5.77389 5.78761 5.79788 5.83369 5.83971 5.92819 5.97147 6.08859 6.10045 6.22055 6.30570 6.42610 6.48933 6.59546 6.73043 6.87675 6.94774 7.81290 7.94430 8.37443 8.51260 9.16329 9.88449 10.08133 11.37060 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013571 B = 0.005641 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.756389 B = 4962.399705 C = 6673.011781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.147 4.147 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.117 4.117 6 C -0.150 4.150 7 C -0.138 4.138 8 C 0.513 3.487 9 O -0.536 6.536 10 N -0.716 5.716 11 C 0.166 3.834 12 H 0.086 0.914 13 C 0.153 3.847 14 N -0.755 5.755 15 C -0.246 4.246 16 H 0.091 0.909 17 C 0.007 3.993 18 N -0.932 5.932 19 Si 0.881 3.119 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.278 1.278 23 C -0.162 4.162 24 C -0.172 4.172 25 C -0.184 4.184 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.403 0.597 37 H 0.033 0.967 38 H 0.042 0.958 39 H 0.362 0.638 40 H 0.260 0.740 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.470 -15.256 14.279 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C -0.063 4.063 4 H 0.099 0.901 5 C -0.155 4.155 6 C -0.208 4.208 7 C -0.178 4.178 8 C 0.299 3.701 9 O -0.414 6.414 10 N -0.366 5.366 11 C 0.061 3.939 12 H 0.104 0.896 13 C 0.025 3.975 14 N -0.401 5.401 15 C -0.376 4.376 16 H 0.109 0.891 17 C -0.189 4.189 18 N -0.580 5.580 19 Si 0.711 3.289 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.204 1.204 23 C -0.182 4.182 24 C -0.209 4.209 25 C -0.221 4.221 26 H 0.113 0.887 27 H 0.106 0.894 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.237 0.763 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.196 0.804 40 H 0.070 0.930 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.213 -15.174 14.136 21.649 hybrid contribution 0.353 0.512 0.896 1.090 sum -5.860 -14.662 15.032 21.801 Atomic orbital electron populations 1.23663 0.95910 1.01155 0.99520 1.22601 0.95920 0.96978 1.01026 1.20146 0.96580 0.97044 0.92490 0.90068 1.21550 0.97888 1.02002 0.94034 1.21755 0.99810 1.02072 0.97128 1.21740 0.98818 1.04372 0.92877 1.20573 0.89193 0.75650 0.84643 1.90608 1.14693 1.49483 1.86622 1.46083 1.10698 1.74344 1.05496 1.20811 0.94850 0.93244 0.85003 0.89556 1.20894 0.96082 0.86697 0.93820 1.42691 1.67464 1.15535 1.14398 1.19052 1.25979 0.96393 0.96167 0.89117 1.24652 1.00104 0.96685 0.97433 1.69694 1.42370 1.10997 1.34960 0.86594 0.78059 0.78258 0.85946 1.21020 1.21633 1.20374 1.22614 0.94946 0.96924 1.03697 1.22889 0.94483 1.03482 1.00085 1.23273 1.03951 0.98529 0.96306 0.88674 0.89417 0.88277 0.91897 0.91756 0.92475 0.93016 0.92815 0.88798 0.88992 0.76271 0.94925 0.93989 0.80447 0.93003 0.87901 0.88844 0.89254 0.90101 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 13.22 29.01 0.38 -1.50 16 2 C -0.15 -1.59 6.76 -36.03 -0.24 -1.83 16 3 C -0.04 -0.47 1.82 -91.77 -0.17 -0.64 16 4 H 0.08 1.03 7.60 -51.93 -0.39 0.63 16 5 C -0.12 -1.04 5.39 -26.73 -0.14 -1.19 16 6 C -0.15 -1.28 9.73 37.16 0.36 -0.91 16 7 C -0.14 -1.53 5.16 -27.88 -0.14 -1.68 16 8 C 0.51 7.34 6.91 -10.98 -0.08 7.26 16 9 O -0.54 -8.84 11.19 5.56 0.06 -8.78 16 10 N -0.72 -10.42 4.50 -53.81 -0.24 -10.67 16 11 C 0.17 2.63 2.43 -67.93 -0.17 2.47 16 12 H 0.09 1.56 7.34 -51.93 -0.38 1.18 16 13 C 0.15 2.85 5.80 -4.04 -0.02 2.83 16 14 N -0.75 -17.50 5.24 -59.91 -0.31 -17.81 16 15 C -0.25 -6.86 10.47 -15.06 -0.16 -7.02 16 16 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 17 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 18 N -0.93 -29.06 13.97 55.49 0.78 -28.28 16 19 Si 0.88 22.03 27.74 -169.99 -4.71 17.32 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.28 -6.73 6.52 56.52 0.37 -6.37 16 23 C -0.16 -2.22 5.36 -90.62 -0.49 -2.70 16 24 C -0.17 -2.21 10.18 -26.70 -0.27 -2.48 16 25 C -0.18 -2.43 9.74 -26.70 -0.26 -2.69 16 26 H 0.09 1.18 7.83 -52.48 -0.41 0.77 16 27 H 0.09 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.10 0.98 8.06 -52.49 -0.42 0.55 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.49 7.38 -51.93 -0.38 0.11 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.40 5.48 8.60 -40.82 -0.35 5.13 16 37 H 0.03 0.60 8.14 -51.92 -0.42 0.17 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.36 8.38 5.20 -40.82 -0.21 8.16 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.10 1.33 8.11 -51.93 -0.42 0.90 16 42 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.12 1.81 5.02 -51.93 -0.26 1.55 16 LS Contribution 360.86 15.07 5.44 5.44 Total: -1.00 -31.33 360.86 -8.38 -39.71 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -7.90 Total: 13.03 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -1.49 Total: -9.97 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.22 Total: -56.76 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.06 Total: -8.78 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.33 -8.38 -39.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754449147.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.786 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds