Wall clock time and date at job start Tue Mar 31 2020 01:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99687 * 2 1 4 4 H 1.09002 * 109.47489 * 359.97438 * 3 2 1 5 5 C 1.53006 * 109.47300 * 119.99865 * 3 2 1 6 6 C 1.52997 * 109.46822 * 294.99983 * 5 3 2 7 7 C 1.53000 * 109.47204 * 239.99686 * 3 2 1 8 8 C 1.50703 * 109.46912 * 65.00158 * 7 3 2 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 3 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 3 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.47129 * 34.99449 * 11 10 8 13 13 C 1.52997 * 109.47387 * 154.99671 * 11 10 8 14 14 N 1.46506 * 109.47130 * 305.00258 * 13 11 10 15 15 C 1.36928 * 119.99837 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00710 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99946 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00486 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99841 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.46741 * 89.99975 * 19 17 15 21 21 H 1.48500 * 109.47083 * 210.00033 * 19 17 15 22 22 H 1.48497 * 109.47150 * 329.99760 * 19 17 15 23 23 C 1.53002 * 109.46916 * 274.99861 * 11 10 8 24 24 C 1.52993 * 117.50092 * 128.74548 * 23 11 10 25 25 C 1.52999 * 117.49909 * 60.08455 * 23 11 10 26 26 H 1.08004 * 120.00131 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00226 * 180.02562 * 1 2 3 28 28 H 1.07996 * 119.99885 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.46746 * 54.99744 * 5 3 2 30 30 H 1.08998 * 109.47205 * 174.99912 * 5 3 2 31 31 H 1.08998 * 109.47289 * 59.99980 * 6 5 3 32 32 H 1.09002 * 109.46611 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47264 * 299.99443 * 6 5 3 34 34 H 1.09002 * 109.47398 * 185.00236 * 7 3 2 35 35 H 1.09001 * 109.47194 * 305.00417 * 7 3 2 36 36 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 37 37 H 1.09008 * 109.46968 * 64.99750 * 13 11 10 38 38 H 1.08998 * 109.47425 * 184.99929 * 13 11 10 39 39 H 0.96994 * 119.99955 * 359.97438 * 14 13 11 40 40 H 0.96995 * 120.00189 * 180.02562 * 18 17 15 41 41 H 1.08998 * 115.54487 * 274.41632 * 23 11 10 42 42 H 1.09004 * 117.49660 * 0.02562 * 24 23 11 43 43 H 1.09003 * 117.49876 * 145.01319 * 24 23 11 44 44 H 1.08998 * 117.49703 * 214.98008 * 25 23 11 45 45 H 1.08993 * 117.50082 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3863 1.2493 6 6 2.0563 1.4308 2.4953 7 6 2.9431 1.3862 -1.2492 8 6 2.0697 1.4300 -2.4766 9 8 0.8626 1.3990 -2.3633 10 7 2.6301 1.5027 -3.7002 11 6 1.7811 1.5459 -4.8933 12 1 0.8730 2.1071 -4.6729 13 6 2.5385 2.2289 -6.0338 14 7 2.9960 3.5495 -5.5942 15 6 3.7020 4.3499 -6.4520 16 1 3.9212 4.0080 -7.4528 17 6 4.1351 5.6013 -6.0358 18 7 4.8132 6.3710 -6.8604 19 14 3.7553 6.1931 -4.3051 20 1 4.8514 5.7840 -3.3905 21 1 3.6354 7.6732 -4.3032 22 1 2.4773 5.5924 -3.8459 23 6 1.4117 0.1203 -5.3081 24 6 -0.0693 -0.1872 -5.5378 25 6 0.6426 -0.7327 -4.2973 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 3.5905 0.5106 1.2952 30 1 3.5539 2.2880 1.2056 31 1 1.4455 0.5291 2.5390 32 1 2.6830 1.4882 3.3853 33 1 1.4088 2.3065 2.4494 34 1 3.5540 2.2879 -1.2055 35 1 3.5906 0.5105 -1.2951 36 1 3.5956 1.5272 -3.7907 37 1 3.3989 1.6210 -6.3139 38 1 1.8775 2.3409 -6.8932 39 1 2.7989 3.8567 -4.6956 40 1 5.1161 7.2453 -6.5694 41 1 2.1357 -0.3860 -5.9464 42 1 -0.7805 0.6262 -5.3937 43 1 -0.3197 -0.8962 -6.3270 44 1 0.8604 -1.8004 -4.2709 45 1 0.4002 -0.2785 -3.3367 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754449147.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:14 Heat of formation + Delta-G solvation = -13.752751 kcal Electronic energy + Delta-G solvation = -22710.455643 eV Core-core repulsion = 19535.336643 eV Total energy + Delta-G solvation = -3175.119001 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14764 -38.85471 -37.32699 -36.74806 -34.93629 -33.35209 -32.57989 -31.45400 -29.75597 -26.10062 -25.23762 -23.24260 -22.99366 -22.50632 -21.73252 -21.22499 -20.40554 -19.78750 -17.85903 -17.30390 -16.82237 -16.56296 -16.17588 -15.84796 -15.62354 -15.18117 -14.98712 -14.80971 -14.64210 -14.42294 -14.00503 -13.75581 -13.53771 -13.00421 -12.90983 -12.87814 -12.67338 -12.54227 -12.26660 -12.18755 -12.06109 -12.00260 -11.85520 -11.67165 -11.33938 -11.23635 -11.09223 -11.03460 -10.68948 -9.97811 -9.84865 -9.33763 -8.04808 -5.38408 1.33879 1.37538 1.44051 1.58885 1.79692 2.23757 2.44837 3.03863 3.26954 3.43703 3.83445 3.85617 3.89229 3.94961 4.05668 4.16566 4.25709 4.39365 4.43821 4.44965 4.47787 4.59339 4.62525 4.68139 4.82827 4.85207 4.90952 5.01753 5.05485 5.06591 5.10330 5.10621 5.19429 5.29580 5.39959 5.42391 5.46925 5.63025 5.74467 5.86882 6.11218 6.18702 6.69693 7.04784 7.40536 7.79802 7.98982 9.16615 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013571 B = 0.005641 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.756389 B = 4962.399705 C = 6673.011781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C -0.043 4.043 4 H 0.056 0.944 5 C -0.113 4.113 6 C -0.150 4.150 7 C -0.134 4.134 8 C 0.507 3.493 9 O -0.561 6.561 10 N -0.716 5.716 11 C 0.178 3.822 12 H 0.062 0.938 13 C 0.153 3.847 14 N -0.755 5.755 15 C -0.234 4.234 16 H 0.062 0.938 17 C -0.057 4.057 18 N -0.981 5.981 19 Si 0.949 3.051 20 H -0.267 1.267 21 H -0.297 1.297 22 H -0.268 1.268 23 C -0.164 4.164 24 C -0.170 4.170 25 C -0.176 4.176 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.409 0.591 37 H 0.045 0.955 38 H 0.037 0.963 39 H 0.365 0.635 40 H 0.258 0.742 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.110 0.890 44 H 0.099 0.901 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.098 -17.056 15.983 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.160 4.160 3 C -0.062 4.062 4 H 0.074 0.926 5 C -0.150 4.150 6 C -0.208 4.208 7 C -0.173 4.173 8 C 0.295 3.705 9 O -0.440 6.440 10 N -0.367 5.367 11 C 0.073 3.927 12 H 0.080 0.920 13 C 0.027 3.973 14 N -0.401 5.401 15 C -0.364 4.364 16 H 0.080 0.920 17 C -0.249 4.249 18 N -0.631 5.631 19 Si 0.777 3.223 20 H -0.192 1.192 21 H -0.224 1.224 22 H -0.193 1.193 23 C -0.184 4.184 24 C -0.207 4.207 25 C -0.213 4.213 26 H 0.095 0.905 27 H 0.116 0.884 28 H 0.133 0.867 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.121 0.879 35 H 0.136 0.864 36 H 0.244 0.756 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.198 0.802 40 H 0.067 0.933 41 H 0.135 0.865 42 H 0.099 0.901 43 H 0.129 0.871 44 H 0.117 0.883 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.852 -17.021 15.857 23.987 hybrid contribution 0.193 1.019 0.282 1.074 sum -5.659 -16.002 16.139 23.421 Atomic orbital electron populations 1.23659 0.96380 1.00816 1.00723 1.22755 0.95752 0.97591 0.99910 1.20126 0.96441 0.96149 0.93437 0.92551 1.21529 0.97670 1.02905 0.92915 1.21752 0.99845 1.01550 0.97608 1.21793 0.98532 1.05986 0.90999 1.21174 0.89292 0.74818 0.85212 1.90613 1.15997 1.50422 1.86942 1.46082 1.10851 1.74489 1.05284 1.20496 0.93488 0.94143 0.84576 0.92004 1.21016 0.96531 0.84947 0.94853 1.42664 1.66967 1.16672 1.13826 1.19042 1.25113 0.96749 0.95542 0.92036 1.25403 1.00716 0.97072 1.01673 1.69864 1.44437 1.11515 1.37298 0.85502 0.78614 0.77034 0.81144 1.19224 1.22428 1.19307 1.22531 0.95808 0.95571 1.04489 1.22966 0.93643 1.03486 1.00640 1.23206 1.03470 0.99218 0.95394 0.90480 0.88436 0.86684 0.90376 0.91363 0.92714 0.91791 0.93722 0.87941 0.86366 0.75561 0.93733 0.94489 0.80207 0.93273 0.86520 0.90073 0.87132 0.88254 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.96 13.22 67.78 0.90 -3.06 16 2 C -0.14 -2.83 6.76 25.65 0.17 -2.65 16 3 C -0.04 -0.84 1.82 -11.54 -0.02 -0.86 16 4 H 0.06 1.40 7.60 -2.39 -0.02 1.38 16 5 C -0.11 -1.72 5.39 30.60 0.16 -1.56 16 6 C -0.15 -2.29 9.73 71.98 0.70 -1.59 16 7 C -0.13 -2.62 5.16 29.85 0.15 -2.46 16 8 C 0.51 13.67 6.91 87.66 0.61 14.28 16 9 O -0.56 -18.11 11.19 -3.02 -0.03 -18.15 16 10 N -0.72 -19.56 4.50 -442.54 -1.99 -21.55 16 11 C 0.18 5.46 2.43 44.99 0.11 5.56 16 12 H 0.06 2.22 7.34 -2.38 -0.02 2.20 16 13 C 0.15 5.56 5.80 86.38 0.50 6.06 16 14 N -0.76 -34.39 5.24 -343.44 -1.80 -36.19 16 15 C -0.23 -13.07 10.47 84.04 0.88 -12.19 16 16 H 0.06 3.75 8.06 -2.91 -0.02 3.72 16 17 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 18 N -0.98 -62.14 13.97 21.65 0.30 -61.83 16 19 Si 0.95 45.36 27.74 68.60 1.90 47.26 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 22 H -0.27 -12.18 6.52 99.48 0.65 -11.53 16 23 C -0.16 -4.16 5.36 -10.80 -0.06 -4.22 16 24 C -0.17 -4.07 10.18 30.62 0.31 -3.75 16 25 C -0.18 -4.28 9.74 30.62 0.30 -3.98 16 26 H 0.08 1.96 7.83 -2.91 -0.02 1.94 16 27 H 0.10 1.90 8.06 -2.91 -0.02 1.88 16 28 H 0.12 1.93 8.06 -2.91 -0.02 1.91 16 29 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.85 7.38 -2.39 -0.02 0.83 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.41 10.18 8.60 -92.70 -0.80 9.38 16 37 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.36 16.31 5.20 -92.71 -0.48 15.83 16 40 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 41 H 0.12 2.67 8.11 -2.39 -0.02 2.65 16 42 H 0.08 2.15 8.05 -2.38 -0.02 2.13 16 43 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.10 2.94 5.02 -2.39 -0.01 2.93 16 Total: -1.00 -67.76 360.86 3.19 -64.57 By element: Atomic # 1 Polarization: 39.53 SS G_CDS: -0.38 Total: 39.15 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 5.18 Total: -13.27 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -3.49 Total: -119.57 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.03 Total: -18.15 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.90 Total: 47.26 kcal Total: -67.76 3.19 -64.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754449147.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.822 kcal (2) G-P(sol) polarization free energy of solvation -67.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds