Wall clock time and date at job start Tue Mar 31 2020 01:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00207 * 2 1 4 4 H 1.09000 * 109.47040 * 0.02562 * 3 2 1 5 5 C 1.53007 * 109.47280 * 240.00301 * 3 2 1 6 6 C 1.52996 * 109.46947 * 64.99955 * 5 3 2 7 7 C 1.53001 * 109.47255 * 120.00283 * 3 2 1 8 8 C 1.50694 * 109.47168 * 185.00084 * 7 3 2 9 9 O 1.21283 * 120.00363 * 359.97438 * 8 7 3 10 10 N 1.34784 * 119.99988 * 179.97438 * 8 7 3 11 11 C 1.46493 * 119.99864 * 179.72721 * 10 8 7 12 12 H 1.09003 * 109.47333 * 324.99821 * 11 10 8 13 13 C 1.53006 * 109.47135 * 204.99938 * 11 10 8 14 14 N 1.46500 * 109.47007 * 54.99771 * 13 11 10 15 15 C 1.36939 * 119.99949 * 180.02562 * 14 13 11 16 16 H 1.07990 * 119.99953 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99878 * 179.97438 * 15 14 13 18 18 N 1.31626 * 120.00156 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99953 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46986 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46744 * 120.00535 * 19 17 15 22 22 H 1.48498 * 109.47162 * 240.00633 * 19 17 15 23 23 C 1.52999 * 109.47638 * 84.99998 * 11 10 8 24 24 C 1.53002 * 117.49733 * 8.74280 * 23 11 10 25 25 C 1.53001 * 117.49745 * 300.08497 * 23 11 10 26 26 H 1.08000 * 119.99654 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.00341 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00230 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.46988 * 184.99947 * 5 3 2 30 30 H 1.08997 * 109.46811 * 305.00125 * 5 3 2 31 31 H 1.08997 * 109.47227 * 60.00424 * 6 5 3 32 32 H 1.09002 * 109.47156 * 180.02562 * 6 5 3 33 33 H 1.08996 * 109.47270 * 299.99819 * 6 5 3 34 34 H 1.08998 * 109.46837 * 65.00105 * 7 3 2 35 35 H 1.09002 * 109.46926 * 304.99909 * 7 3 2 36 36 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 37 37 H 1.08994 * 109.47199 * 174.99984 * 13 11 10 38 38 H 1.08999 * 109.46831 * 295.00211 * 13 11 10 39 39 H 0.97001 * 119.99996 * 359.97438 * 14 13 11 40 40 H 0.96990 * 120.00071 * 179.97438 * 18 17 15 41 41 H 1.08996 * 115.55574 * 154.41145 * 23 11 10 42 42 H 1.09008 * 117.49503 * 0.02562 * 24 23 11 43 43 H 1.08995 * 117.50226 * 145.02106 * 24 23 11 44 44 H 1.08998 * 117.50012 * 214.97868 * 25 23 11 45 45 H 1.09003 * 117.49730 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3862 -1.2493 6 6 2.0564 1.4308 -2.4953 7 6 2.9432 1.3861 1.2492 8 6 3.6021 2.7399 1.3127 9 8 3.3894 3.5592 0.4441 10 7 4.4277 3.0403 2.3348 11 6 5.0729 4.3542 2.3933 12 1 5.3084 4.6887 1.3830 13 6 6.3624 4.2533 3.2107 14 7 7.2180 3.2070 2.6457 15 6 8.4329 2.9341 3.2156 16 1 8.7600 3.4898 4.0818 17 6 9.2434 1.9423 2.6805 18 7 8.8445 1.2645 1.6251 19 14 10.9010 1.5705 3.4575 20 1 11.1132 2.4657 4.6231 21 1 10.9301 0.1559 3.9085 22 1 11.9771 1.7939 2.4589 23 6 4.1268 5.3580 3.0553 24 6 2.8492 4.8095 3.6939 25 6 2.7727 5.6003 2.3854 26 1 -0.5399 0.9353 0.0004 27 1 -0.5400 -0.9352 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 3.5540 2.2878 -1.2056 30 1 3.5905 0.5105 -1.2953 31 1 1.4090 2.3065 -2.4494 32 1 2.6830 1.4881 -3.3854 33 1 1.4455 0.5292 -2.5390 34 1 3.7085 0.6112 1.2054 35 1 2.3280 1.2395 2.1370 36 1 4.5980 2.3849 3.0293 37 1 6.8875 5.2079 3.1803 38 1 6.1191 4.0052 4.2438 39 1 6.9237 2.7070 1.8683 40 1 9.4110 0.5717 1.2510 41 1 4.6073 6.2075 3.5406 42 1 2.6830 3.7334 3.6428 43 1 2.4890 5.2983 4.5990 44 1 2.3623 6.6090 2.4303 45 1 2.5561 5.0447 1.4729 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754449148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:18 Heat of formation + Delta-G solvation = 4.318675 kcal Electronic energy + Delta-G solvation = -22655.910362 eV Core-core repulsion = 19481.574997 eV Total energy + Delta-G solvation = -3174.335365 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.10137 -37.73454 -36.20057 -34.88477 -33.24763 -31.75876 -31.32675 -30.13903 -28.02219 -24.65420 -23.91569 -22.22497 -21.81821 -21.47373 -20.42993 -19.59592 -19.54541 -17.32042 -16.63509 -16.07132 -15.74789 -14.92229 -14.83713 -14.60028 -14.42176 -13.84461 -13.75126 -13.30454 -13.12056 -12.95683 -12.71427 -12.52090 -12.02382 -11.81089 -11.62876 -11.37738 -11.17325 -11.12189 -11.02477 -10.90288 -10.85150 -10.62089 -10.49816 -10.19816 -10.04991 -9.80426 -9.57123 -9.45208 -9.28151 -8.93482 -8.55737 -6.97730 -5.80389 -3.09942 2.22300 2.95647 3.40617 3.46682 3.48794 3.54248 4.08900 4.54504 4.76398 4.81140 4.94354 5.09068 5.18802 5.22842 5.23477 5.28579 5.40144 5.52559 5.56140 5.59605 5.62414 5.76618 5.79461 5.84606 5.86832 6.00166 6.03375 6.05022 6.05855 6.21206 6.24378 6.33579 6.42788 6.48373 6.51180 6.54023 6.63660 6.71095 6.78880 6.99218 7.66928 7.91036 8.37688 8.59921 9.49712 10.05513 10.41122 11.42069 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014158 B = 0.004794 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.261003 B = 5838.980137 C = 7171.229444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.139 4.139 3 C -0.042 4.042 4 H 0.079 0.921 5 C -0.124 4.124 6 C -0.146 4.146 7 C -0.137 4.137 8 C 0.516 3.484 9 O -0.541 6.541 10 N -0.710 5.710 11 C 0.168 3.832 12 H 0.090 0.910 13 C 0.148 3.852 14 N -0.731 5.731 15 C -0.242 4.242 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.291 1.291 23 C -0.160 4.160 24 C -0.177 4.177 25 C -0.187 4.187 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.404 0.596 37 H 0.033 0.967 38 H 0.026 0.974 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.635 0.801 -0.524 16.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.157 4.157 3 C -0.061 4.061 4 H 0.098 0.902 5 C -0.161 4.161 6 C -0.203 4.203 7 C -0.177 4.177 8 C 0.303 3.697 9 O -0.420 6.420 10 N -0.360 5.360 11 C 0.063 3.937 12 H 0.108 0.892 13 C 0.020 3.980 14 N -0.376 5.376 15 C -0.373 4.373 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.180 4.180 24 C -0.215 4.215 25 C -0.224 4.224 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.126 0.874 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.239 0.761 37 H 0.050 0.950 38 H 0.043 0.957 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.125 0.875 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.622 1.402 -1.025 16.712 hybrid contribution 1.021 -0.780 0.617 1.425 sum -15.601 0.622 -0.409 15.618 Atomic orbital electron populations 1.23801 0.95929 1.01544 1.02323 1.23002 0.95891 0.98327 0.98509 1.20127 0.96742 0.95263 0.93991 0.90225 1.21668 0.97978 1.03419 0.93014 1.21717 0.99692 1.01196 0.97696 1.21705 1.00288 0.95860 0.99856 1.20548 0.78829 0.89151 0.81146 1.90575 1.62772 1.50321 1.38312 1.46029 1.46472 1.16923 1.26591 1.20713 0.91071 0.81336 1.00537 0.89225 1.20909 0.88550 0.93478 0.95105 1.42351 1.18391 1.40967 1.35917 1.19263 0.93868 1.14730 1.09405 0.91100 1.24740 0.98868 0.99054 0.98121 1.69674 1.37804 1.26218 1.24250 0.86126 0.84095 0.77692 0.78314 1.20554 1.21883 1.21855 1.22697 0.89861 1.01322 1.04100 1.22873 1.01879 1.00145 0.96567 1.23343 1.00046 1.01071 0.97919 0.88742 0.88762 0.87400 0.89429 0.92413 0.93027 0.93138 0.93222 0.88424 0.89264 0.76082 0.94953 0.95672 0.78000 0.93546 0.87458 0.89047 0.89662 0.89925 0.86412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 14.32 29.02 0.42 -1.44 16 2 C -0.14 -1.43 7.75 -36.02 -0.28 -1.71 16 3 C -0.04 -0.51 1.80 -91.77 -0.17 -0.67 16 4 H 0.08 1.02 7.60 -51.93 -0.39 0.62 16 5 C -0.12 -1.63 5.18 -26.73 -0.14 -1.77 16 6 C -0.15 -1.70 9.73 37.16 0.36 -1.34 16 7 C -0.14 -1.67 5.16 -27.89 -0.14 -1.82 16 8 C 0.52 7.78 6.35 -10.98 -0.07 7.71 16 9 O -0.54 -9.40 11.00 5.56 0.06 -9.34 16 10 N -0.71 -10.85 3.06 -53.81 -0.16 -11.02 16 11 C 0.17 2.80 2.59 -67.93 -0.18 2.62 16 12 H 0.09 1.71 7.58 -51.93 -0.39 1.31 16 13 C 0.15 2.85 5.80 -4.04 -0.02 2.83 16 14 N -0.73 -17.84 5.43 -59.91 -0.33 -18.17 16 15 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 19 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 C -0.16 -2.27 5.71 -90.62 -0.52 -2.79 16 24 C -0.18 -2.27 9.74 -26.69 -0.26 -2.53 16 25 C -0.19 -2.58 9.82 -26.69 -0.26 -2.84 16 26 H 0.09 0.86 7.83 -52.49 -0.41 0.45 16 27 H 0.09 0.75 8.06 -52.49 -0.42 0.33 16 28 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.09 1.40 5.88 -51.93 -0.31 1.09 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.53 7.38 -51.93 -0.38 0.15 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.40 5.98 8.60 -40.82 -0.35 5.63 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.39 10.01 7.33 -40.82 -0.30 9.71 16 40 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.11 1.43 8.11 -51.93 -0.42 1.00 16 42 H 0.09 1.17 6.67 -51.92 -0.35 0.82 16 43 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.12 1.86 5.00 -51.93 -0.26 1.60 16 LS Contribution 360.38 15.07 5.43 5.43 Total: -1.00 -29.86 360.38 -8.56 -38.42 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -7.76 Total: 15.45 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -1.50 Total: -10.90 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.23 Total: -56.12 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.06 Total: -9.34 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.86 -8.56 -38.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754449148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.738 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds