Wall clock time and date at job start Tue Mar 31 2020 01:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00207 * 2 1 4 4 H 1.09000 * 109.47040 * 0.02562 * 3 2 1 5 5 C 1.53007 * 109.47280 * 240.00301 * 3 2 1 6 6 C 1.52996 * 109.46947 * 64.99955 * 5 3 2 7 7 C 1.53001 * 109.47255 * 120.00283 * 3 2 1 8 8 C 1.50694 * 109.47168 * 185.00084 * 7 3 2 9 9 O 1.21283 * 120.00363 * 359.97438 * 8 7 3 10 10 N 1.34784 * 119.99988 * 179.97438 * 8 7 3 11 11 C 1.46493 * 119.99864 * 179.72721 * 10 8 7 12 12 H 1.09003 * 109.47333 * 324.99821 * 11 10 8 13 13 C 1.53006 * 109.47135 * 204.99938 * 11 10 8 14 14 N 1.46500 * 109.47007 * 54.99771 * 13 11 10 15 15 C 1.36939 * 119.99949 * 180.02562 * 14 13 11 16 16 H 1.07990 * 119.99953 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99878 * 179.97438 * 15 14 13 18 18 N 1.31626 * 120.00156 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99953 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46986 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46744 * 120.00535 * 19 17 15 22 22 H 1.48498 * 109.47162 * 240.00633 * 19 17 15 23 23 C 1.52999 * 109.47638 * 84.99998 * 11 10 8 24 24 C 1.53002 * 117.49733 * 8.74280 * 23 11 10 25 25 C 1.53001 * 117.49745 * 300.08497 * 23 11 10 26 26 H 1.08000 * 119.99654 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.00341 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00230 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.46988 * 184.99947 * 5 3 2 30 30 H 1.08997 * 109.46811 * 305.00125 * 5 3 2 31 31 H 1.08997 * 109.47227 * 60.00424 * 6 5 3 32 32 H 1.09002 * 109.47156 * 180.02562 * 6 5 3 33 33 H 1.08996 * 109.47270 * 299.99819 * 6 5 3 34 34 H 1.08998 * 109.46837 * 65.00105 * 7 3 2 35 35 H 1.09002 * 109.46926 * 304.99909 * 7 3 2 36 36 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 37 37 H 1.08994 * 109.47199 * 174.99984 * 13 11 10 38 38 H 1.08999 * 109.46831 * 295.00211 * 13 11 10 39 39 H 0.97001 * 119.99996 * 359.97438 * 14 13 11 40 40 H 0.96990 * 120.00071 * 179.97438 * 18 17 15 41 41 H 1.08996 * 115.55574 * 154.41145 * 23 11 10 42 42 H 1.09008 * 117.49503 * 0.02562 * 24 23 11 43 43 H 1.08995 * 117.50226 * 145.02106 * 24 23 11 44 44 H 1.08998 * 117.50012 * 214.97868 * 25 23 11 45 45 H 1.09003 * 117.49730 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3862 -1.2493 6 6 2.0564 1.4308 -2.4953 7 6 2.9432 1.3861 1.2492 8 6 3.6021 2.7399 1.3127 9 8 3.3894 3.5592 0.4441 10 7 4.4277 3.0403 2.3348 11 6 5.0729 4.3542 2.3933 12 1 5.3084 4.6887 1.3830 13 6 6.3624 4.2533 3.2107 14 7 7.2180 3.2070 2.6457 15 6 8.4329 2.9341 3.2156 16 1 8.7600 3.4898 4.0818 17 6 9.2434 1.9423 2.6805 18 7 8.8445 1.2645 1.6251 19 14 10.9010 1.5705 3.4575 20 1 11.1132 2.4657 4.6231 21 1 10.9301 0.1559 3.9085 22 1 11.9771 1.7939 2.4589 23 6 4.1268 5.3580 3.0553 24 6 2.8492 4.8095 3.6939 25 6 2.7727 5.6003 2.3854 26 1 -0.5399 0.9353 0.0004 27 1 -0.5400 -0.9352 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 3.5540 2.2878 -1.2056 30 1 3.5905 0.5105 -1.2953 31 1 1.4090 2.3065 -2.4494 32 1 2.6830 1.4881 -3.3854 33 1 1.4455 0.5292 -2.5390 34 1 3.7085 0.6112 1.2054 35 1 2.3280 1.2395 2.1370 36 1 4.5980 2.3849 3.0293 37 1 6.8875 5.2079 3.1803 38 1 6.1191 4.0052 4.2438 39 1 6.9237 2.7070 1.8683 40 1 9.4110 0.5717 1.2510 41 1 4.6073 6.2075 3.5406 42 1 2.6830 3.7334 3.6428 43 1 2.4890 5.2983 4.5990 44 1 2.3623 6.6090 2.4303 45 1 2.5561 5.0447 1.4729 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754449148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:17 Heat of formation + Delta-G solvation = -12.286247 kcal Electronic energy + Delta-G solvation = -22656.630405 eV Core-core repulsion = 19481.574997 eV Total energy + Delta-G solvation = -3175.055408 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.32619 -38.87509 -37.27492 -36.54041 -34.74956 -33.08928 -32.63310 -31.34148 -29.56126 -26.12220 -25.36570 -23.45253 -22.97161 -22.78026 -21.56670 -20.83376 -20.45893 -19.24371 -17.86031 -17.29718 -17.12130 -16.54339 -15.82166 -15.82042 -15.52906 -15.23160 -15.10691 -14.94623 -14.51545 -14.29140 -13.81994 -13.62063 -13.32882 -13.11240 -12.86743 -12.78154 -12.71701 -12.63091 -12.26174 -12.06431 -12.04459 -11.98263 -11.83356 -11.62037 -11.52601 -11.19801 -10.99643 -10.81002 -10.56732 -10.16673 -9.83735 -9.00893 -7.94435 -5.23794 1.44889 1.48440 1.49306 1.59040 1.75126 2.34174 2.55955 2.98161 3.40240 3.63452 3.78463 3.84505 4.00857 4.11363 4.12867 4.19959 4.24607 4.42838 4.44431 4.47577 4.51280 4.61672 4.62940 4.66992 4.83445 4.85365 4.91283 4.99591 5.04919 5.07676 5.12423 5.17524 5.23409 5.28481 5.40730 5.45327 5.48312 5.51124 5.67628 5.81110 5.97567 6.26648 6.67948 7.34187 7.38519 8.07251 8.31730 9.28813 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014158 B = 0.004794 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.261003 B = 5838.980137 C = 7171.229444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.152 4.152 3 C -0.035 4.035 4 H 0.070 0.930 5 C -0.124 4.124 6 C -0.140 4.140 7 C -0.131 4.131 8 C 0.512 3.488 9 O -0.566 6.566 10 N -0.708 5.708 11 C 0.180 3.820 12 H 0.058 0.942 13 C 0.150 3.850 14 N -0.742 5.742 15 C -0.244 4.244 16 H 0.078 0.922 17 C -0.071 4.071 18 N -0.968 5.968 19 Si 0.971 3.029 20 H -0.265 1.265 21 H -0.292 1.292 22 H -0.297 1.297 23 C -0.169 4.169 24 C -0.160 4.160 25 C -0.189 4.189 26 H 0.095 0.905 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.408 0.592 37 H 0.033 0.967 38 H 0.039 0.961 39 H 0.375 0.625 40 H 0.250 0.750 41 H 0.120 0.880 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.875 0.598 1.007 17.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.170 4.170 3 C -0.054 4.054 4 H 0.089 0.911 5 C -0.161 4.161 6 C -0.198 4.198 7 C -0.171 4.171 8 C 0.300 3.700 9 O -0.446 6.446 10 N -0.359 5.359 11 C 0.074 3.926 12 H 0.076 0.924 13 C 0.024 3.976 14 N -0.385 5.385 15 C -0.375 4.375 16 H 0.096 0.904 17 C -0.264 4.264 18 N -0.618 5.618 19 Si 0.801 3.199 20 H -0.190 1.190 21 H -0.220 1.220 22 H -0.225 1.225 23 C -0.188 4.188 24 C -0.197 4.197 25 C -0.226 4.226 26 H 0.114 0.886 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.132 0.868 36 H 0.243 0.757 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.207 0.793 40 H 0.059 0.941 41 H 0.138 0.862 42 H 0.109 0.891 43 H 0.125 0.875 44 H 0.117 0.883 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.880 1.227 0.541 17.930 hybrid contribution 1.352 -0.648 0.122 1.504 sum -16.528 0.579 0.663 16.552 Atomic orbital electron populations 1.23979 0.95547 1.02477 1.00171 1.22887 0.96208 0.97446 1.00428 1.20023 0.96250 0.96150 0.92974 0.91138 1.21619 0.98198 1.01520 0.94811 1.21668 0.99482 1.01758 0.96850 1.21733 1.00441 0.93661 1.01249 1.21080 0.78498 0.89983 0.80429 1.90573 1.63578 1.51392 1.39063 1.46002 1.46397 1.16582 1.26904 1.20407 0.90877 0.82726 0.98556 0.92382 1.21018 0.88963 0.91901 0.95764 1.42514 1.18448 1.41925 1.35635 1.19661 0.94680 1.14051 1.09129 0.90422 1.25519 1.02392 0.99526 0.98954 1.69828 1.39026 1.27049 1.25923 0.85102 0.79742 0.77420 0.77645 1.18975 1.21964 1.22483 1.22611 0.89899 1.01313 1.05020 1.22955 0.99775 1.00248 0.96711 1.23280 0.99619 1.01936 0.97729 0.88618 0.86983 0.86734 0.92731 0.92748 0.93217 0.93138 0.91813 0.88501 0.86773 0.75671 0.94885 0.94318 0.79297 0.94105 0.86212 0.89063 0.87454 0.88315 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.99 14.32 67.78 0.97 -2.02 16 2 C -0.15 -2.86 7.75 25.65 0.20 -2.66 16 3 C -0.04 -0.82 1.80 -11.54 -0.02 -0.84 16 4 H 0.07 1.78 7.60 -2.39 -0.02 1.76 16 5 C -0.12 -3.36 5.18 30.60 0.16 -3.20 16 6 C -0.14 -3.25 9.73 71.98 0.70 -2.55 16 7 C -0.13 -3.14 5.16 29.85 0.15 -2.98 16 8 C 0.51 15.67 6.35 87.65 0.56 16.23 16 9 O -0.57 -20.41 11.00 -3.04 -0.03 -20.44 16 10 N -0.71 -21.73 3.06 -442.53 -1.35 -23.09 16 11 C 0.18 6.01 2.59 44.99 0.12 6.13 16 12 H 0.06 2.31 7.58 -2.39 -0.02 2.29 16 13 C 0.15 5.75 5.80 86.38 0.50 6.25 16 14 N -0.74 -36.49 5.43 -343.45 -1.87 -38.36 16 15 C -0.24 -13.23 9.99 84.03 0.84 -12.39 16 16 H 0.08 4.04 7.83 -2.92 -0.02 4.02 16 17 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 18 N -0.97 -58.42 13.06 21.65 0.28 -58.14 16 19 Si 0.97 45.41 29.55 68.60 2.03 47.44 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 23 C -0.17 -4.59 5.71 -10.79 -0.06 -4.65 16 24 C -0.16 -3.71 9.74 30.62 0.30 -3.42 16 25 C -0.19 -4.98 9.82 30.62 0.30 -4.68 16 26 H 0.10 1.53 7.83 -2.91 -0.02 1.51 16 27 H 0.11 1.44 8.06 -2.91 -0.02 1.42 16 28 H 0.11 2.03 8.06 -2.91 -0.02 2.00 16 29 H 0.05 1.84 5.88 -2.39 -0.01 1.83 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.29 7.38 -2.39 -0.02 1.27 16 34 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.41 11.91 8.60 -92.71 -0.80 11.11 16 37 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.37 19.94 7.33 -92.71 -0.68 19.26 16 40 H 0.25 14.68 8.31 -92.72 -0.77 13.91 16 41 H 0.12 2.96 8.11 -2.39 -0.02 2.94 16 42 H 0.09 2.14 6.67 -2.38 -0.02 2.12 16 43 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.10 3.04 5.00 -2.39 -0.01 3.03 16 Total: -1.00 -64.28 360.38 3.73 -60.55 By element: Atomic # 1 Polarization: 46.90 SS G_CDS: -0.51 Total: 46.39 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 5.18 Total: -14.36 kcal Atomic # 7 Polarization: -116.64 SS G_CDS: -2.94 Total: -119.58 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.03 Total: -20.44 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -64.28 3.73 -60.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754449148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.262 kcal (2) G-P(sol) polarization free energy of solvation -64.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds