Wall clock time and date at job start Tue Mar 31 2020 01:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50707 * 119.99974 * 2 1 4 4 H 1.09001 * 109.46664 * 0.02562 * 3 2 1 5 5 C 1.52992 * 109.46966 * 239.99837 * 3 2 1 6 6 C 1.52997 * 109.47482 * 64.99950 * 5 3 2 7 7 C 1.52997 * 109.46925 * 119.99654 * 3 2 1 8 8 C 1.50706 * 109.47133 * 185.00367 * 7 3 2 9 9 O 1.21285 * 119.99316 * 359.97438 * 8 7 3 10 10 N 1.34774 * 120.00025 * 180.02562 * 8 7 3 11 11 C 1.46508 * 119.99646 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46998 * 35.00180 * 11 10 8 13 13 C 1.53001 * 109.46762 * 155.00323 * 11 10 8 14 14 N 1.46501 * 109.47018 * 304.99758 * 13 11 10 15 15 C 1.36931 * 119.99922 * 180.02562 * 14 13 11 16 16 H 1.07991 * 120.00245 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99850 * 180.02562 * 15 14 13 18 18 N 1.31618 * 120.00129 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 120.00179 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46860 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47103 * 119.99750 * 19 17 15 22 22 H 1.48493 * 109.47004 * 240.00007 * 19 17 15 23 23 C 1.53001 * 109.47125 * 274.99899 * 11 10 8 24 24 C 1.52993 * 117.49684 * 128.74682 * 23 11 10 25 25 C 1.53005 * 117.49939 * 60.08819 * 23 11 10 26 26 H 1.07999 * 119.99932 * 0.02562 * 1 2 3 27 27 H 1.07995 * 119.99880 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.99932 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47103 * 304.99703 * 5 3 2 30 30 H 1.08998 * 109.46862 * 185.00515 * 5 3 2 31 31 H 1.09002 * 109.47153 * 59.99783 * 6 5 3 32 32 H 1.09001 * 109.46832 * 299.99974 * 6 5 3 33 33 H 1.09004 * 109.47261 * 179.97438 * 6 5 3 34 34 H 1.09009 * 109.47234 * 304.99635 * 7 3 2 35 35 H 1.08996 * 109.47701 * 65.00053 * 7 3 2 36 36 H 0.96995 * 120.00273 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.47205 * 64.99907 * 13 11 10 38 38 H 1.09001 * 109.46979 * 185.00072 * 13 11 10 39 39 H 0.97009 * 119.99986 * 0.02562 * 14 13 11 40 40 H 0.97010 * 119.99919 * 180.02562 * 18 17 15 41 41 H 1.08997 * 115.55251 * 274.42096 * 23 11 10 42 42 H 1.09000 * 117.50214 * 0.02562 * 24 23 11 43 43 H 1.09008 * 117.49770 * 145.02075 * 24 23 11 44 44 H 1.08997 * 117.49734 * 214.97938 * 25 23 11 45 45 H 1.09002 * 117.49504 * 359.97362 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0565 1.4307 -2.4953 7 6 2.9430 1.3862 1.2493 8 6 3.6019 2.7401 1.3128 9 8 3.3892 3.5593 0.4441 10 7 4.4281 3.0402 2.3344 11 6 5.0690 4.3563 2.3959 12 1 4.3875 5.1109 2.0032 13 6 5.4147 4.6877 3.8490 14 7 4.2079 4.5866 4.6733 15 6 4.2734 4.8413 6.0171 16 1 5.2145 5.1171 6.4692 17 6 3.1300 4.7450 6.7983 18 7 1.9828 4.4094 6.2473 19 14 3.2194 5.0918 8.6318 20 1 4.6133 5.4465 9.0010 21 1 2.3163 6.2222 8.9663 22 1 2.7995 3.8830 9.3851 23 6 6.3492 4.3397 1.5581 24 6 6.5313 5.4529 0.5244 25 6 6.2133 4.0273 0.0664 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 3.5906 0.5105 -1.2950 30 1 3.5541 2.2878 -1.2054 31 1 1.4090 2.3063 -2.4494 32 1 1.4457 0.5290 -2.5389 33 1 2.6833 1.4888 -3.3852 34 1 2.3277 1.2396 2.1370 35 1 3.7084 0.6114 1.2058 36 1 4.5985 2.3849 3.0290 37 1 6.1638 3.9849 4.2136 38 1 5.8099 5.7020 3.9061 39 1 3.3624 4.3392 4.2672 40 1 1.1837 4.3424 6.7932 41 1 7.2408 3.9766 2.0691 42 1 5.7394 6.1972 0.4415 43 1 7.5430 5.8219 0.3552 44 1 7.0158 3.4590 -0.4038 45 1 5.2120 3.8331 -0.3179 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754449150.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:23 Heat of formation + Delta-G solvation = -0.087779 kcal Electronic energy + Delta-G solvation = -22523.413188 eV Core-core repulsion = 19348.886745 eV Total energy + Delta-G solvation = -3174.526443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.94018 -37.68484 -36.26851 -34.97743 -33.35249 -31.77071 -31.26358 -30.15480 -27.90961 -24.67446 -23.84664 -22.12355 -21.86479 -21.46516 -20.36204 -19.90842 -19.55892 -17.29545 -16.58220 -16.03436 -15.45186 -15.01977 -14.79909 -14.69124 -14.43608 -13.92833 -13.84543 -13.29974 -13.10152 -12.88829 -12.71523 -12.49750 -12.13083 -11.82681 -11.65685 -11.24255 -11.15997 -11.07077 -10.97330 -10.90640 -10.83106 -10.63874 -10.54533 -10.16191 -10.06649 -9.91910 -9.69482 -9.42101 -9.22372 -8.92720 -8.54872 -6.97539 -5.79943 -3.09619 2.26906 2.99388 3.40887 3.46635 3.48969 3.49827 4.17553 4.54562 4.78592 4.80336 4.90931 5.12184 5.18903 5.23034 5.25166 5.33706 5.33992 5.46634 5.51996 5.55771 5.61474 5.77834 5.83456 5.85052 5.86738 5.93459 5.95856 6.06527 6.08864 6.13943 6.24027 6.34646 6.38773 6.42201 6.52180 6.55751 6.63607 6.71143 6.81128 7.00196 7.67178 7.94938 8.37975 8.63289 9.49997 10.05832 10.41425 11.42487 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014255 B = 0.004745 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.800668 B = 5899.030034 C = 7581.617178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C -0.044 4.044 4 H 0.082 0.918 5 C -0.120 4.120 6 C -0.147 4.147 7 C -0.136 4.136 8 C 0.518 3.482 9 O -0.545 6.545 10 N -0.708 5.708 11 C 0.168 3.832 12 H 0.087 0.913 13 C 0.148 3.852 14 N -0.731 5.731 15 C -0.242 4.242 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.162 4.162 24 C -0.172 4.172 25 C -0.185 4.185 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.403 0.597 37 H 0.024 0.976 38 H 0.034 0.966 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 -8.111 -14.707 17.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.162 4.162 3 C -0.063 4.063 4 H 0.101 0.899 5 C -0.158 4.158 6 C -0.204 4.204 7 C -0.176 4.176 8 C 0.305 3.695 9 O -0.424 6.424 10 N -0.358 5.358 11 C 0.064 3.936 12 H 0.105 0.895 13 C 0.020 3.980 14 N -0.376 5.376 15 C -0.373 4.373 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.182 4.182 24 C -0.210 4.210 25 C -0.222 4.222 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.124 0.876 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.238 0.762 37 H 0.042 0.958 38 H 0.052 0.948 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.987 -7.472 -15.136 17.345 hybrid contribution -0.150 -0.270 1.421 1.454 sum 3.837 -7.742 -13.715 16.210 Atomic orbital electron populations 1.23848 0.96001 1.01730 1.01455 1.22931 0.95917 0.98038 0.99315 1.20135 0.96926 0.95575 0.93670 0.89919 1.21650 0.98022 1.02723 0.93356 1.21729 0.99772 1.01528 0.97415 1.21691 1.00173 0.95280 1.00452 1.20524 0.78371 0.89308 0.81297 1.90566 1.62617 1.50471 1.38768 1.45996 1.46687 1.16978 1.26127 1.20768 0.91694 0.85066 0.96108 0.89530 1.20914 0.91191 0.98542 0.87369 1.42354 1.06072 1.83790 1.05422 1.19263 0.94679 1.39173 0.84199 0.91088 1.24743 0.95523 1.02393 0.98124 1.69679 0.98974 1.54567 1.34716 0.86125 0.77231 0.77453 0.85410 1.20545 1.21853 1.21863 1.22648 0.99547 1.04605 0.91376 1.22889 1.02123 0.92208 1.03754 1.23274 1.04200 0.98227 0.96476 0.88535 0.88735 0.87612 0.92882 0.89645 0.92814 0.93107 0.93306 0.88515 0.89203 0.76199 0.95824 0.94824 0.77999 0.93535 0.88043 0.88792 0.89328 0.90045 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.98 14.32 29.01 0.42 -1.56 16 2 C -0.14 -1.51 7.75 -36.02 -0.28 -1.79 16 3 C -0.04 -0.53 1.80 -91.77 -0.17 -0.70 16 4 H 0.08 1.16 7.60 -51.93 -0.39 0.76 16 5 C -0.12 -1.39 5.18 -26.74 -0.14 -1.53 16 6 C -0.15 -1.56 9.73 37.16 0.36 -1.20 16 7 C -0.14 -1.68 5.16 -27.88 -0.14 -1.82 16 8 C 0.52 7.94 6.84 -10.98 -0.08 7.86 16 9 O -0.55 -9.54 11.01 5.55 0.06 -9.48 16 10 N -0.71 -11.04 4.50 -53.80 -0.24 -11.28 16 11 C 0.17 2.82 2.43 -67.92 -0.17 2.66 16 12 H 0.09 1.67 7.34 -51.93 -0.38 1.29 16 13 C 0.15 2.88 5.80 -4.04 -0.02 2.86 16 14 N -0.73 -18.01 5.43 -59.91 -0.33 -18.33 16 15 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 19 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C -0.16 -2.30 5.36 -90.62 -0.49 -2.78 16 24 C -0.17 -2.28 10.18 -26.70 -0.27 -2.55 16 25 C -0.18 -2.51 9.74 -26.69 -0.26 -2.77 16 26 H 0.10 1.02 7.83 -52.49 -0.41 0.61 16 27 H 0.09 0.83 8.06 -52.49 -0.42 0.40 16 28 H 0.11 0.97 8.06 -52.49 -0.42 0.55 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 1.16 5.88 -51.93 -0.31 0.85 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.50 7.38 -51.93 -0.38 0.12 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 1.23 8.14 -51.92 -0.42 0.81 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.40 6.03 8.60 -40.82 -0.35 5.68 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.39 10.13 7.33 -40.82 -0.30 9.83 16 40 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.10 1.35 8.11 -51.93 -0.42 0.93 16 42 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 43 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 44 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.12 1.83 5.02 -51.93 -0.26 1.57 16 LS Contribution 363.32 15.07 5.48 5.48 Total: -1.00 -30.17 363.32 -8.63 -38.80 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -7.82 Total: 15.34 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -1.48 Total: -10.54 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.16 Total: -56.73 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.06 Total: -9.48 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.17 -8.63 -38.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754449150.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.712 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds