Wall clock time and date at job start Tue Mar 31 2020 01:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50707 * 119.99974 * 2 1 4 4 H 1.09001 * 109.46664 * 0.02562 * 3 2 1 5 5 C 1.52992 * 109.46966 * 239.99837 * 3 2 1 6 6 C 1.52997 * 109.47482 * 64.99950 * 5 3 2 7 7 C 1.52997 * 109.46925 * 119.99654 * 3 2 1 8 8 C 1.50706 * 109.47133 * 185.00367 * 7 3 2 9 9 O 1.21285 * 119.99316 * 359.97438 * 8 7 3 10 10 N 1.34774 * 120.00025 * 180.02562 * 8 7 3 11 11 C 1.46508 * 119.99646 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46998 * 35.00180 * 11 10 8 13 13 C 1.53001 * 109.46762 * 155.00323 * 11 10 8 14 14 N 1.46501 * 109.47018 * 304.99758 * 13 11 10 15 15 C 1.36931 * 119.99922 * 180.02562 * 14 13 11 16 16 H 1.07991 * 120.00245 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99850 * 180.02562 * 15 14 13 18 18 N 1.31618 * 120.00129 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 120.00179 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46860 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47103 * 119.99750 * 19 17 15 22 22 H 1.48493 * 109.47004 * 240.00007 * 19 17 15 23 23 C 1.53001 * 109.47125 * 274.99899 * 11 10 8 24 24 C 1.52993 * 117.49684 * 128.74682 * 23 11 10 25 25 C 1.53005 * 117.49939 * 60.08819 * 23 11 10 26 26 H 1.07999 * 119.99932 * 0.02562 * 1 2 3 27 27 H 1.07995 * 119.99880 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.99932 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47103 * 304.99703 * 5 3 2 30 30 H 1.08998 * 109.46862 * 185.00515 * 5 3 2 31 31 H 1.09002 * 109.47153 * 59.99783 * 6 5 3 32 32 H 1.09001 * 109.46832 * 299.99974 * 6 5 3 33 33 H 1.09004 * 109.47261 * 179.97438 * 6 5 3 34 34 H 1.09009 * 109.47234 * 304.99635 * 7 3 2 35 35 H 1.08996 * 109.47701 * 65.00053 * 7 3 2 36 36 H 0.96995 * 120.00273 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.47205 * 64.99907 * 13 11 10 38 38 H 1.09001 * 109.46979 * 185.00072 * 13 11 10 39 39 H 0.97009 * 119.99986 * 0.02562 * 14 13 11 40 40 H 0.97010 * 119.99919 * 180.02562 * 18 17 15 41 41 H 1.08997 * 115.55251 * 274.42096 * 23 11 10 42 42 H 1.09000 * 117.50214 * 0.02562 * 24 23 11 43 43 H 1.09008 * 117.49770 * 145.02075 * 24 23 11 44 44 H 1.08997 * 117.49734 * 214.97938 * 25 23 11 45 45 H 1.09002 * 117.49504 * 359.97362 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0565 1.4307 -2.4953 7 6 2.9430 1.3862 1.2493 8 6 3.6019 2.7401 1.3128 9 8 3.3892 3.5593 0.4441 10 7 4.4281 3.0402 2.3344 11 6 5.0690 4.3563 2.3959 12 1 4.3875 5.1109 2.0032 13 6 5.4147 4.6877 3.8490 14 7 4.2079 4.5866 4.6733 15 6 4.2734 4.8413 6.0171 16 1 5.2145 5.1171 6.4692 17 6 3.1300 4.7450 6.7983 18 7 1.9828 4.4094 6.2473 19 14 3.2194 5.0918 8.6318 20 1 4.6133 5.4465 9.0010 21 1 2.3163 6.2222 8.9663 22 1 2.7995 3.8830 9.3851 23 6 6.3492 4.3397 1.5581 24 6 6.5313 5.4529 0.5244 25 6 6.2133 4.0273 0.0664 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 3.5906 0.5105 -1.2950 30 1 3.5541 2.2878 -1.2054 31 1 1.4090 2.3063 -2.4494 32 1 1.4457 0.5290 -2.5389 33 1 2.6833 1.4888 -3.3852 34 1 2.3277 1.2396 2.1370 35 1 3.7084 0.6114 1.2058 36 1 4.5985 2.3849 3.0290 37 1 6.1638 3.9849 4.2136 38 1 5.8099 5.7020 3.9061 39 1 3.3624 4.3392 4.2672 40 1 1.1837 4.3424 6.7932 41 1 7.2408 3.9766 2.0691 42 1 5.7394 6.1972 0.4415 43 1 7.5430 5.8219 0.3552 44 1 7.0158 3.4590 -0.4038 45 1 5.2120 3.8331 -0.3179 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754449150.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:22 Heat of formation + Delta-G solvation = -17.551529 kcal Electronic energy + Delta-G solvation = -22524.170473 eV Core-core repulsion = 19348.886745 eV Total energy + Delta-G solvation = -3175.283728 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.17533 -38.83976 -37.31931 -36.60638 -34.91954 -33.04820 -32.61964 -31.33638 -29.45892 -26.12372 -25.31931 -23.27936 -23.08582 -22.70576 -21.54091 -21.17071 -20.46698 -19.24008 -17.86280 -17.28313 -16.71189 -16.65654 -15.90746 -15.79005 -15.66563 -15.26499 -15.07375 -14.91875 -14.53601 -14.22960 -13.86738 -13.53342 -13.47633 -13.17967 -12.84039 -12.76920 -12.66465 -12.45998 -12.23211 -12.05468 -12.03462 -11.98639 -11.84820 -11.58646 -11.50662 -11.18212 -11.05612 -10.99668 -10.51308 -10.16340 -9.84179 -9.02008 -7.95091 -5.24707 1.44131 1.48162 1.49083 1.58909 1.77564 2.28807 2.55784 3.06067 3.39583 3.60367 3.78574 3.85240 3.98311 4.13187 4.16414 4.19266 4.24202 4.41473 4.42444 4.46173 4.49214 4.58516 4.66030 4.67936 4.82843 4.86995 4.92853 4.98712 5.06597 5.08070 5.12882 5.15213 5.23111 5.31052 5.38671 5.47667 5.50311 5.55533 5.67006 5.78718 5.98650 6.25794 6.70593 7.33274 7.40461 8.06219 8.30612 9.28203 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014255 B = 0.004745 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.800668 B = 5899.030034 C = 7581.617178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 C -0.042 4.042 4 H 0.053 0.947 5 C -0.116 4.116 6 C -0.144 4.144 7 C -0.129 4.129 8 C 0.512 3.488 9 O -0.570 6.570 10 N -0.708 5.708 11 C 0.180 3.820 12 H 0.055 0.945 13 C 0.150 3.850 14 N -0.742 5.742 15 C -0.244 4.244 16 H 0.079 0.921 17 C -0.072 4.072 18 N -0.968 5.968 19 Si 0.972 3.028 20 H -0.265 1.265 21 H -0.297 1.297 22 H -0.292 1.292 23 C -0.164 4.164 24 C -0.168 4.168 25 C -0.178 4.178 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.128 0.872 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.407 0.593 37 H 0.040 0.960 38 H 0.033 0.967 39 H 0.374 0.626 40 H 0.250 0.750 41 H 0.119 0.881 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.103 0.897 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.758 -9.454 -14.836 18.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.163 4.163 3 C -0.061 4.061 4 H 0.071 0.929 5 C -0.154 4.154 6 C -0.201 4.201 7 C -0.169 4.169 8 C 0.301 3.699 9 O -0.450 6.450 10 N -0.358 5.358 11 C 0.074 3.926 12 H 0.073 0.927 13 C 0.023 3.977 14 N -0.386 5.386 15 C -0.376 4.376 16 H 0.096 0.904 17 C -0.264 4.264 18 N -0.619 5.619 19 Si 0.802 3.198 20 H -0.189 1.189 21 H -0.225 1.225 22 H -0.219 1.219 23 C -0.184 4.184 24 C -0.206 4.206 25 C -0.215 4.215 26 H 0.103 0.897 27 H 0.132 0.868 28 H 0.146 0.854 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.137 0.863 36 H 0.243 0.757 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.206 0.794 40 H 0.059 0.941 41 H 0.137 0.863 42 H 0.097 0.903 43 H 0.132 0.868 44 H 0.121 0.879 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.720 -8.814 -15.274 18.539 hybrid contribution -0.658 0.196 1.401 1.560 sum 5.062 -8.618 -13.873 17.098 Atomic orbital electron populations 1.23986 0.96166 1.02135 1.01035 1.22955 0.95942 0.97797 0.99636 1.20068 0.96511 0.95659 0.93818 0.92858 1.21587 0.97982 1.02352 0.93442 1.21700 0.99681 1.01322 0.97440 1.21708 1.00657 0.94076 1.00456 1.21071 0.77945 0.90225 0.80671 1.90566 1.63259 1.51527 1.39672 1.45987 1.46888 1.16502 1.26400 1.20484 0.92469 0.84976 0.94640 0.92706 1.21034 0.89586 0.98760 0.88308 1.42520 1.07185 1.83661 1.05197 1.19669 0.94816 1.37619 0.85476 0.90354 1.25537 0.95329 1.03223 1.02355 1.69836 0.99527 1.56473 1.36075 0.85090 0.77649 0.76732 0.80362 1.18910 1.22478 1.21922 1.22548 0.98509 1.05836 0.91482 1.22967 1.03021 0.91786 1.02818 1.23222 1.03879 0.98696 0.95713 0.89719 0.86839 0.85448 0.91078 0.91919 0.94280 0.92104 0.92317 0.88895 0.86316 0.75736 0.94212 0.94927 0.79355 0.94095 0.86305 0.90269 0.86823 0.87853 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.81 14.32 67.78 0.97 -2.84 16 2 C -0.15 -2.82 7.75 25.65 0.20 -2.62 16 3 C -0.04 -0.99 1.80 -11.54 -0.02 -1.01 16 4 H 0.05 1.56 7.60 -2.39 -0.02 1.55 16 5 C -0.12 -2.60 5.18 30.59 0.16 -2.44 16 6 C -0.14 -2.96 9.73 71.98 0.70 -2.26 16 7 C -0.13 -3.12 5.16 29.85 0.15 -2.97 16 8 C 0.51 15.91 6.84 87.66 0.60 16.51 16 9 O -0.57 -20.68 11.01 -3.05 -0.03 -20.71 16 10 N -0.71 -22.07 4.50 -442.51 -1.99 -24.06 16 11 C 0.18 6.03 2.43 44.99 0.11 6.14 16 12 H 0.05 2.20 7.34 -2.39 -0.02 2.18 16 13 C 0.15 5.77 5.80 86.38 0.50 6.27 16 14 N -0.74 -36.78 5.43 -343.46 -1.87 -38.65 16 15 C -0.24 -13.32 9.99 84.03 0.84 -12.48 16 16 H 0.08 4.08 7.83 -2.92 -0.02 4.06 16 17 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 18 N -0.97 -58.84 13.06 21.65 0.28 -58.56 16 19 Si 0.97 45.54 29.55 68.60 2.03 47.56 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 21 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 23 C -0.16 -4.42 5.36 -10.79 -0.06 -4.48 16 24 C -0.17 -4.24 10.18 30.62 0.31 -3.92 16 25 C -0.18 -4.58 9.74 30.62 0.30 -4.29 16 26 H 0.08 1.82 7.83 -2.91 -0.02 1.80 16 27 H 0.11 1.76 8.06 -2.91 -0.02 1.74 16 28 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.71 5.88 -2.39 -0.01 1.70 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.88 16 32 H 0.06 1.12 7.38 -2.39 -0.02 1.10 16 33 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.41 11.99 8.60 -92.71 -0.80 11.19 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.37 20.12 7.33 -92.70 -0.68 19.44 16 40 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 41 H 0.12 2.83 8.11 -2.39 -0.02 2.81 16 42 H 0.08 2.23 8.05 -2.39 -0.02 2.21 16 43 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 44 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.10 3.02 5.02 -2.39 -0.01 3.00 16 Total: -1.00 -65.19 363.32 3.14 -62.05 By element: Atomic # 1 Polarization: 46.89 SS G_CDS: -0.51 Total: 46.38 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 5.23 Total: -14.01 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -3.57 Total: -121.27 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.03 Total: -20.71 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -65.19 3.14 -62.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754449150.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.500 kcal (2) G-P(sol) polarization free energy of solvation -65.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds