Wall clock time and date at job start Tue Mar 31 2020 02:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.01175 * 2 1 4 4 C 1.53866 * 110.03451 * 121.39541 * 2 1 3 5 5 C 1.54261 * 106.60162 * 119.28303 * 4 2 1 6 6 C 1.54891 * 104.19445 * 23.61295 * 5 4 2 7 7 H 1.09001 * 110.75646 * 80.36765 * 6 5 4 8 8 C 1.53000 * 110.75805 * 203.73965 * 6 5 4 9 9 C 1.50696 * 109.47405 * 293.54770 * 8 6 5 10 10 O 1.21290 * 119.99739 * 359.97438 * 9 8 6 11 11 N 1.34768 * 120.00428 * 179.97438 * 9 8 6 12 12 C 1.46974 * 120.59263 * 359.71847 * 11 9 8 13 13 C 1.53807 * 108.39641 * 124.75786 * 12 11 9 14 14 N 1.46961 * 108.58334 * 49.64022 * 13 12 11 15 15 C 1.36938 * 120.59925 * 124.62082 * 14 13 12 16 16 H 1.07994 * 120.00549 * 208.17948 * 15 14 13 17 17 C 1.38813 * 119.99645 * 28.17455 * 15 14 13 18 18 N 1.31623 * 120.00127 * 17.57330 * 17 15 14 19 19 Si 1.86801 * 120.00040 * 197.57013 * 17 15 14 20 20 H 1.48495 * 109.46978 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47072 * 120.00265 * 19 17 15 22 22 H 1.48500 * 109.46990 * 240.00333 * 19 17 15 23 23 C 1.46961 * 118.81084 * 304.64669 * 14 13 12 24 24 C 1.46970 * 120.59800 * 179.97438 * 11 9 8 25 25 C 1.54263 * 110.03304 * 238.56192 * 2 1 3 26 26 H 1.08993 * 109.47414 * 300.05604 * 1 2 3 27 27 H 1.09005 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47201 * 60.06346 * 1 2 3 29 29 H 1.09003 * 110.03580 * 238.57153 * 4 2 1 30 30 H 1.09007 * 110.03316 * 359.95408 * 4 2 1 31 31 H 1.09005 * 110.48805 * 142.28970 * 5 4 2 32 32 H 1.08997 * 110.49281 * 264.93297 * 5 4 2 33 33 H 1.09003 * 109.46905 * 53.54517 * 8 6 5 34 34 H 1.08999 * 109.46912 * 173.54284 * 8 6 5 35 35 H 1.08994 * 109.60845 * 244.54385 * 12 11 9 36 36 H 1.09000 * 109.60525 * 5.05399 * 12 11 9 37 37 H 1.09003 * 109.74603 * 289.84581 * 13 12 11 38 38 H 1.09003 * 109.52899 * 169.30350 * 13 12 11 39 39 H 0.96999 * 120.00337 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.61294 * 295.48110 * 23 14 13 41 41 H 1.09000 * 109.75460 * 175.05222 * 23 14 13 42 42 H 1.08994 * 109.60400 * 354.95059 * 24 11 9 43 43 H 1.09001 * 109.60675 * 115.46075 * 24 11 9 44 44 H 1.09005 * 110.48934 * 335.78721 * 25 2 1 45 45 H 1.09002 * 110.48990 * 98.42456 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0572 -0.7530 1.2339 5 6 2.8875 -1.9403 0.7042 6 6 3.3137 -1.5010 -0.7186 7 1 4.1710 -0.8292 -0.6749 8 6 3.6210 -2.7184 -1.5928 9 6 4.8419 -3.4236 -1.0609 10 8 5.4107 -2.9944 -0.0793 11 7 5.3019 -4.5312 -1.6757 12 6 4.6193 -5.0661 -2.8623 13 6 5.6451 -5.1792 -4.0027 14 7 6.8346 -5.8772 -3.4951 15 6 7.3014 -7.0031 -4.1193 16 1 7.8378 -7.7509 -3.5541 17 6 7.0852 -7.1833 -5.4785 18 7 6.7535 -6.1577 -6.2339 19 14 7.2648 -8.8815 -6.2358 20 1 7.6414 -9.8565 -5.1810 21 1 5.9750 -9.2892 -6.8484 22 1 8.3203 -8.8487 -7.2799 23 6 7.5139 -5.3455 -2.3053 24 6 6.4918 -5.2289 -1.1684 25 6 2.0585 -0.7559 -1.2365 26 1 -0.3634 0.5147 0.8894 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5129 -0.8906 29 1 2.6868 -0.0946 1.8325 30 1 1.2229 -1.1179 1.8333 31 1 3.7638 -2.1032 1.3317 32 1 2.2773 -2.8423 0.6581 33 1 2.7713 -3.4010 -1.5767 34 1 3.8064 -2.3931 -2.6165 35 1 4.2098 -6.0506 -2.6359 36 1 3.8153 -4.3917 -3.1569 37 1 5.9243 -4.1833 -4.3469 38 1 5.2124 -5.7459 -4.8271 39 1 6.6028 -6.2835 -7.1838 40 1 7.9262 -4.3615 -2.5285 41 1 8.3170 -6.0196 -2.0076 42 1 6.9245 -4.6620 -0.3441 43 1 6.2128 -6.2248 -0.8241 44 1 1.3143 -1.4666 -1.5961 45 1 2.3297 -0.0544 -2.0255 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336046310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:28 Heat of formation + Delta-G solvation = -33.307484 kcal Electronic energy + Delta-G solvation = -22719.515376 eV Core-core repulsion = 19543.548419 eV Total energy + Delta-G solvation = -3175.966957 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.86671 -38.34603 -36.67715 -33.83708 -32.71280 -31.34582 -30.18522 -29.53640 -27.61959 -26.50353 -24.39180 -23.47108 -22.69917 -20.76664 -19.93558 -19.67463 -18.37901 -17.06381 -16.26797 -15.93812 -15.38587 -15.10222 -14.75088 -14.28837 -13.87687 -13.68836 -13.52619 -13.36896 -13.27628 -13.06813 -12.83094 -12.53642 -12.21123 -11.76239 -11.65267 -11.36010 -11.02983 -10.90283 -10.82630 -10.79229 -10.70236 -10.60125 -10.54588 -10.46285 -10.39789 -10.23919 -10.01720 -9.84375 -9.22230 -8.61451 -8.20360 -6.72785 -5.87790 -3.31805 3.06754 3.31911 3.40351 3.42348 3.50705 4.42510 4.51044 4.54875 4.64755 4.99655 5.11328 5.23399 5.26359 5.32496 5.36503 5.41456 5.49983 5.56889 5.59901 5.70493 5.71258 5.80881 5.86575 5.87487 5.89358 5.96257 6.03622 6.06664 6.10051 6.13440 6.22427 6.30927 6.35609 6.43313 6.45497 6.50608 6.78637 6.94493 7.21248 7.44273 7.70876 7.97578 8.33820 8.64091 9.10144 9.72777 10.29899 11.19927 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034376 B = 0.003530 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.321136 B = 7930.409178 C = 8439.509368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.068 0.932 4 C -0.121 4.121 5 C -0.116 4.116 6 C -0.074 4.074 7 H 0.081 0.919 8 C -0.132 4.132 9 C 0.510 3.490 10 O -0.558 6.558 11 N -0.599 5.599 12 C 0.079 3.921 13 C 0.158 3.842 14 N -0.592 5.592 15 C -0.254 4.254 16 H 0.068 0.932 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.132 3.868 24 C 0.096 3.904 25 C -0.117 4.117 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.023 0.977 38 H 0.100 0.900 39 H 0.254 0.746 40 H 0.023 0.977 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.320 8.977 9.796 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.087 0.913 4 C -0.159 4.159 5 C -0.153 4.153 6 C -0.093 4.093 7 H 0.099 0.901 8 C -0.172 4.172 9 C 0.298 3.702 10 O -0.438 6.438 11 N -0.331 5.331 12 C -0.045 4.045 13 C 0.031 3.969 14 N -0.315 5.315 15 C -0.384 4.384 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.733 3.267 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.217 1.217 23 C 0.005 3.995 24 C -0.028 4.028 25 C -0.155 4.155 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.118 0.882 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.030 9.173 10.119 17.555 hybrid contribution 0.059 -0.917 -0.683 1.145 sum -10.970 8.256 9.436 16.660 Atomic orbital electron populations 1.21884 0.95283 1.01674 1.01263 1.21728 0.95381 0.99326 0.95164 0.91344 1.22237 0.99205 0.97386 0.97058 1.22395 0.99563 0.96997 0.96359 1.21848 0.97588 0.95384 0.94433 0.90059 1.21696 0.96744 0.97671 1.01047 1.20612 0.85729 0.80441 0.83419 1.90609 1.60175 1.65977 1.27039 1.48102 1.28958 1.26651 1.29432 1.22763 0.96520 0.98172 0.87033 1.21257 0.86026 0.96508 0.93118 1.43995 1.27741 1.29846 1.29879 1.19251 1.33500 0.95204 0.90413 0.91438 1.25068 1.01227 0.97392 0.95929 1.70028 1.51454 1.28199 1.04966 0.86204 0.77394 0.84029 0.79036 1.20205 1.21472 1.21675 1.21283 0.93243 0.97345 0.87643 1.22159 0.86717 0.95992 0.97979 1.22531 0.97065 0.98832 0.97053 0.92996 0.92645 0.92896 0.92154 0.92109 0.90430 0.92368 0.89310 0.88977 0.91907 0.90969 0.95849 0.88246 0.93546 0.95953 0.91626 0.90065 0.92171 0.91403 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.84 37.16 0.33 -0.82 16 2 C -0.10 -0.90 3.50 -89.51 -0.31 -1.21 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 4 C -0.12 -1.22 6.46 -25.62 -0.17 -1.39 16 5 C -0.12 -1.41 5.59 -25.07 -0.14 -1.55 16 6 C -0.07 -0.90 2.49 -88.63 -0.22 -1.12 16 7 H 0.08 1.11 8.05 -51.93 -0.42 0.70 16 8 C -0.13 -1.73 3.55 -27.89 -0.10 -1.83 16 9 C 0.51 8.73 7.49 -10.99 -0.08 8.65 16 10 O -0.56 -10.88 13.94 5.55 0.08 -10.80 16 11 N -0.60 -10.85 2.94 -172.24 -0.51 -11.35 16 12 C 0.08 1.41 6.54 -3.36 -0.02 1.39 16 13 C 0.16 3.55 5.53 -3.37 -0.02 3.53 16 14 N -0.59 -14.44 2.97 -171.80 -0.51 -14.95 16 15 C -0.25 -6.76 9.58 -15.06 -0.14 -6.90 16 16 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 17 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 18 N -0.90 -25.24 11.20 55.49 0.62 -24.62 16 19 Si 0.90 21.00 29.59 -169.99 -5.03 15.97 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.13 2.79 6.67 -3.62 -0.02 2.77 16 24 C 0.10 1.79 6.59 -3.61 -0.02 1.76 16 25 C -0.12 -1.16 5.81 -25.08 -0.15 -1.31 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 31 H 0.08 1.11 7.06 -51.93 -0.37 0.75 16 32 H 0.06 0.70 8.01 -51.93 -0.42 0.28 16 33 H 0.09 1.03 7.86 -51.93 -0.41 0.63 16 34 H 0.09 1.15 7.73 -51.93 -0.40 0.75 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.06 5.91 -51.93 -0.31 0.75 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 2.46 5.99 -51.93 -0.31 2.15 16 39 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 42 H 0.08 1.49 6.99 -51.93 -0.36 1.13 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.07 0.64 7.76 -51.93 -0.40 0.23 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 344.07 15.07 5.18 5.18 Total: -1.00 -29.56 344.07 -9.30 -38.86 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.98 Total: -0.24 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -1.16 Total: 1.95 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.39 Total: -50.92 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.56 -9.30 -38.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336046310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.550 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds