Wall clock time and date at job start Tue Mar 31 2020 02:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.01175 * 2 1 4 4 C 1.53866 * 110.03451 * 121.39541 * 2 1 3 5 5 C 1.54261 * 106.60162 * 119.28303 * 4 2 1 6 6 C 1.54891 * 104.19445 * 23.61295 * 5 4 2 7 7 H 1.09001 * 110.75646 * 80.36765 * 6 5 4 8 8 C 1.53000 * 110.75805 * 203.73965 * 6 5 4 9 9 C 1.50696 * 109.47405 * 293.54770 * 8 6 5 10 10 O 1.21290 * 119.99739 * 359.97438 * 9 8 6 11 11 N 1.34768 * 120.00428 * 179.97438 * 9 8 6 12 12 C 1.46974 * 120.59263 * 359.71847 * 11 9 8 13 13 C 1.53807 * 108.39641 * 124.75786 * 12 11 9 14 14 N 1.46961 * 108.58334 * 49.64022 * 13 12 11 15 15 C 1.36938 * 120.59925 * 124.62082 * 14 13 12 16 16 H 1.07994 * 120.00549 * 208.17948 * 15 14 13 17 17 C 1.38813 * 119.99645 * 28.17455 * 15 14 13 18 18 N 1.31623 * 120.00127 * 17.57330 * 17 15 14 19 19 Si 1.86801 * 120.00040 * 197.57013 * 17 15 14 20 20 H 1.48495 * 109.46978 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47072 * 120.00265 * 19 17 15 22 22 H 1.48500 * 109.46990 * 240.00333 * 19 17 15 23 23 C 1.46961 * 118.81084 * 304.64669 * 14 13 12 24 24 C 1.46970 * 120.59800 * 179.97438 * 11 9 8 25 25 C 1.54263 * 110.03304 * 238.56192 * 2 1 3 26 26 H 1.08993 * 109.47414 * 300.05604 * 1 2 3 27 27 H 1.09005 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47201 * 60.06346 * 1 2 3 29 29 H 1.09003 * 110.03580 * 238.57153 * 4 2 1 30 30 H 1.09007 * 110.03316 * 359.95408 * 4 2 1 31 31 H 1.09005 * 110.48805 * 142.28970 * 5 4 2 32 32 H 1.08997 * 110.49281 * 264.93297 * 5 4 2 33 33 H 1.09003 * 109.46905 * 53.54517 * 8 6 5 34 34 H 1.08999 * 109.46912 * 173.54284 * 8 6 5 35 35 H 1.08994 * 109.60845 * 244.54385 * 12 11 9 36 36 H 1.09000 * 109.60525 * 5.05399 * 12 11 9 37 37 H 1.09003 * 109.74603 * 289.84581 * 13 12 11 38 38 H 1.09003 * 109.52899 * 169.30350 * 13 12 11 39 39 H 0.96999 * 120.00337 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.61294 * 295.48110 * 23 14 13 41 41 H 1.09000 * 109.75460 * 175.05222 * 23 14 13 42 42 H 1.08994 * 109.60400 * 354.95059 * 24 11 9 43 43 H 1.09001 * 109.60675 * 115.46075 * 24 11 9 44 44 H 1.09005 * 110.48934 * 335.78721 * 25 2 1 45 45 H 1.09002 * 110.48990 * 98.42456 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0572 -0.7530 1.2339 5 6 2.8875 -1.9403 0.7042 6 6 3.3137 -1.5010 -0.7186 7 1 4.1710 -0.8292 -0.6749 8 6 3.6210 -2.7184 -1.5928 9 6 4.8419 -3.4236 -1.0609 10 8 5.4107 -2.9944 -0.0793 11 7 5.3019 -4.5312 -1.6757 12 6 4.6193 -5.0661 -2.8623 13 6 5.6451 -5.1792 -4.0027 14 7 6.8346 -5.8772 -3.4951 15 6 7.3014 -7.0031 -4.1193 16 1 7.8378 -7.7509 -3.5541 17 6 7.0852 -7.1833 -5.4785 18 7 6.7535 -6.1577 -6.2339 19 14 7.2648 -8.8815 -6.2358 20 1 7.6414 -9.8565 -5.1810 21 1 5.9750 -9.2892 -6.8484 22 1 8.3203 -8.8487 -7.2799 23 6 7.5139 -5.3455 -2.3053 24 6 6.4918 -5.2289 -1.1684 25 6 2.0585 -0.7559 -1.2365 26 1 -0.3634 0.5147 0.8894 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5129 -0.8906 29 1 2.6868 -0.0946 1.8325 30 1 1.2229 -1.1179 1.8333 31 1 3.7638 -2.1032 1.3317 32 1 2.2773 -2.8423 0.6581 33 1 2.7713 -3.4010 -1.5767 34 1 3.8064 -2.3931 -2.6165 35 1 4.2098 -6.0506 -2.6359 36 1 3.8153 -4.3917 -3.1569 37 1 5.9243 -4.1833 -4.3469 38 1 5.2124 -5.7459 -4.8271 39 1 6.6028 -6.2835 -7.1838 40 1 7.9262 -4.3615 -2.5285 41 1 8.3170 -6.0196 -2.0076 42 1 6.9245 -4.6620 -0.3441 43 1 6.2128 -6.2248 -0.8241 44 1 1.3143 -1.4666 -1.5961 45 1 2.3297 -0.0544 -2.0255 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336046310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:27 Heat of formation + Delta-G solvation = -48.672913 kcal Electronic energy + Delta-G solvation = -22720.181671 eV Core-core repulsion = 19543.548419 eV Total energy + Delta-G solvation = -3176.633252 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.19564 -39.38526 -38.24070 -35.57288 -33.81202 -33.01715 -31.81881 -30.46386 -28.97323 -27.82490 -25.61532 -24.96705 -24.25391 -22.26864 -21.01679 -20.57102 -19.85800 -18.65091 -17.68342 -17.22083 -16.78229 -16.51846 -16.33731 -15.48812 -15.35445 -15.17598 -15.00327 -14.82277 -14.48733 -14.15684 -13.85476 -13.68687 -13.36010 -13.20628 -12.97786 -12.78154 -12.68324 -12.47593 -12.21260 -12.04983 -11.97890 -11.84714 -11.65691 -11.64990 -11.57330 -11.43003 -11.38723 -11.22294 -10.66641 -10.54922 -9.78281 -8.65815 -7.89271 -5.37328 1.47632 1.50633 1.60660 1.71079 2.10920 2.51378 3.25153 3.52049 3.59597 3.69404 3.79722 3.94968 4.23700 4.24820 4.28653 4.38791 4.40288 4.53359 4.54667 4.58643 4.67199 4.72271 4.75121 4.76213 4.78853 4.81911 4.85971 4.93466 5.05668 5.08117 5.15542 5.20557 5.23924 5.28398 5.38328 5.47477 5.54884 5.55958 5.61370 5.64118 5.67982 6.35169 6.56333 7.10581 7.25508 7.77972 8.31601 9.15893 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034376 B = 0.003530 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.321136 B = 7930.409178 C = 8439.509368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.070 0.930 4 C -0.119 4.119 5 C -0.115 4.115 6 C -0.074 4.074 7 H 0.060 0.940 8 C -0.126 4.126 9 C 0.506 3.494 10 O -0.584 6.584 11 N -0.606 5.606 12 C 0.096 3.904 13 C 0.162 3.838 14 N -0.610 5.610 15 C -0.266 4.266 16 H 0.067 0.933 17 C -0.045 4.045 18 N -0.932 5.932 19 Si 0.969 3.031 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.295 1.295 23 C 0.133 3.867 24 C 0.106 3.894 25 C -0.111 4.111 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.000 1.000 38 H 0.075 0.925 39 H 0.252 0.748 40 H 0.006 0.994 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.279 8.906 10.148 18.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 H 0.088 0.912 4 C -0.156 4.156 5 C -0.153 4.153 6 C -0.093 4.093 7 H 0.079 0.921 8 C -0.166 4.166 9 C 0.296 3.704 10 O -0.465 6.465 11 N -0.339 5.339 12 C -0.028 4.028 13 C 0.036 3.964 14 N -0.333 5.333 15 C -0.396 4.396 16 H 0.085 0.915 17 C -0.241 4.241 18 N -0.577 5.577 19 Si 0.797 3.203 20 H -0.193 1.193 21 H -0.212 1.212 22 H -0.222 1.222 23 C 0.006 3.994 24 C -0.019 4.019 25 C -0.148 4.148 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.127 0.873 37 H 0.018 0.982 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.024 0.976 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.999 9.112 10.496 19.031 hybrid contribution 0.753 -0.845 -0.747 1.356 sum -12.246 8.267 9.749 17.702 Atomic orbital electron populations 1.21858 0.93987 1.01994 1.01977 1.21729 0.96427 0.99121 0.94238 0.91187 1.22222 0.99173 0.96602 0.97619 1.22346 0.98793 0.98117 0.96020 1.21821 0.98051 0.94892 0.94560 0.92141 1.21765 0.95378 0.98025 1.01411 1.21348 0.86457 0.79710 0.82851 1.90604 1.61247 1.66378 1.28306 1.48202 1.28884 1.27147 1.29628 1.22560 0.95613 0.99633 0.84995 1.21119 0.86563 0.94412 0.94331 1.44273 1.28795 1.29751 1.30501 1.19537 1.33293 0.95938 0.90807 0.91493 1.25784 1.01464 1.00551 0.96312 1.70166 1.52676 1.29941 1.04961 0.85196 0.76996 0.80154 0.77973 1.19307 1.21202 1.22206 1.21330 0.94126 0.96373 0.87545 1.21942 0.86561 0.96619 0.96740 1.22508 0.95919 0.98965 0.97432 0.92381 0.92499 0.92172 0.92522 0.91064 0.93294 0.91944 0.86888 0.87882 0.91324 0.87280 0.98226 0.90649 0.93850 0.97555 0.91144 0.89829 0.91427 0.90204 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.84 71.98 0.64 -1.19 16 2 C -0.10 -1.56 3.50 -10.07 -0.04 -1.59 16 3 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.12 -2.19 6.46 31.31 0.20 -1.99 16 5 C -0.12 -2.67 5.59 31.67 0.18 -2.49 16 6 C -0.07 -1.70 2.49 -9.50 -0.02 -1.72 16 7 H 0.06 1.63 8.05 -2.39 -0.02 1.61 16 8 C -0.13 -3.02 3.55 29.85 0.11 -2.92 16 9 C 0.51 16.70 7.49 87.66 0.66 17.35 16 10 O -0.58 -22.61 13.94 -3.06 -0.04 -22.65 16 11 N -0.61 -21.20 2.94 -817.23 -2.40 -23.61 16 12 C 0.10 3.24 6.54 86.56 0.57 3.80 16 13 C 0.16 7.32 5.53 86.56 0.48 7.80 16 14 N -0.61 -29.96 2.97 -697.45 -2.07 -32.03 16 15 C -0.27 -14.19 9.58 84.03 0.80 -13.38 16 16 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 17 C -0.05 -2.43 4.90 84.86 0.42 -2.02 16 18 N -0.93 -52.83 11.20 21.65 0.24 -52.59 16 19 Si 0.97 43.24 29.59 68.60 2.03 45.27 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 21 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 C 0.13 5.65 6.67 86.40 0.58 6.23 16 24 C 0.11 3.89 6.59 86.40 0.57 4.46 16 25 C -0.11 -1.90 5.81 31.67 0.18 -1.71 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.17 7.67 -2.38 -0.02 1.15 16 31 H 0.05 1.41 7.06 -2.38 -0.02 1.39 16 32 H 0.06 1.37 8.01 -2.39 -0.02 1.35 16 33 H 0.11 2.20 7.86 -2.39 -0.02 2.18 16 34 H 0.10 2.29 7.73 -2.39 -0.02 2.27 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.11 2.87 5.91 -2.39 -0.01 2.85 16 37 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.08 3.78 5.99 -2.39 -0.01 3.76 16 39 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 40 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.07 2.86 7.94 -2.39 -0.02 2.85 16 42 H 0.08 3.04 6.99 -2.39 -0.02 3.02 16 43 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.08 1.20 7.76 -2.38 -0.02 1.18 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -63.90 344.07 4.01 -59.89 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.94 Total: 15.09 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 5.31 Total: 10.63 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -4.23 Total: -108.23 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.04 Total: -22.65 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -63.90 4.01 -59.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336046310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.214 kcal (2) G-P(sol) polarization free energy of solvation -63.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds