Wall clock time and date at job start Tue Mar 31 2020 02:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 110.05451 * 2 1 4 4 C 1.54268 * 110.02990 * 121.41851 * 2 1 3 5 5 C 1.54891 * 104.19241 * 142.89482 * 4 2 1 6 6 C 1.55008 * 102.75471 * 322.04118 * 5 4 2 7 7 C 1.53870 * 110.02982 * 238.58204 * 2 1 3 8 8 C 1.52997 * 110.03291 * 0.04992 * 7 2 1 9 9 C 1.50698 * 110.03052 * 121.43102 * 7 2 1 10 10 O 1.21282 * 120.00230 * 359.30784 * 9 7 2 11 11 N 1.34780 * 120.00100 * 179.31287 * 9 7 2 12 12 C 1.46497 * 119.99934 * 180.02562 * 11 9 7 13 13 H 1.08999 * 112.85549 * 23.79860 * 12 11 9 14 14 C 1.53793 * 113.61367 * 154.99621 * 12 11 9 15 15 C 1.53781 * 87.07845 * 89.20011 * 14 12 11 16 16 H 1.09002 * 113.61228 * 139.98223 * 15 14 12 17 17 N 1.46500 * 113.61339 * 270.80169 * 15 14 12 18 18 C 1.36936 * 119.99618 * 203.47656 * 17 15 14 19 19 H 1.07990 * 120.00427 * 359.97438 * 18 17 15 20 20 C 1.38824 * 119.99622 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00063 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99662 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47100 * 90.00073 * 22 20 18 24 24 H 1.48504 * 109.47148 * 209.99685 * 22 20 18 25 25 H 1.48493 * 109.47533 * 329.99863 * 22 20 18 26 26 C 1.53777 * 113.69163 * 252.53129 * 12 11 9 27 27 H 1.09002 * 109.47373 * 181.42061 * 1 2 3 28 28 H 1.09001 * 109.46840 * 301.41414 * 1 2 3 29 29 H 1.08991 * 109.47088 * 61.41501 * 1 2 3 30 30 H 1.09000 * 110.47971 * 261.56928 * 4 2 1 31 31 H 1.08993 * 110.49127 * 24.08096 * 4 2 1 32 32 H 1.09003 * 110.75665 * 80.37183 * 5 4 2 33 33 H 1.09004 * 110.75396 * 203.55445 * 5 4 2 34 34 H 1.08993 * 110.50596 * 279.29862 * 6 5 4 35 35 H 1.09002 * 110.52296 * 156.61301 * 6 5 4 36 36 H 1.09003 * 109.47424 * 180.68750 * 8 7 2 37 37 H 1.09003 * 109.47538 * 300.69018 * 8 7 2 38 38 H 1.09002 * 109.47633 * 60.69309 * 8 7 2 39 39 H 0.97002 * 119.99541 * 359.97438 * 11 9 7 40 40 H 1.09000 * 113.61258 * 334.65147 * 14 12 11 41 41 H 1.08997 * 113.61168 * 203.74968 * 14 12 11 42 42 H 0.96998 * 120.00149 * 23.46564 * 17 15 14 43 43 H 0.96996 * 120.00147 * 180.02562 * 21 20 18 44 44 H 1.08999 * 113.61947 * 156.32790 * 26 12 11 45 45 H 1.08997 * 113.61348 * 25.42005 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0585 -0.7555 1.2369 5 6 3.3137 -1.5008 0.7191 6 6 2.8871 -1.9414 -0.7046 7 6 2.0571 -0.7536 -1.2337 8 6 0.8861 -1.2658 -2.0747 9 6 2.9275 0.1564 -2.0615 10 8 3.1059 1.3050 -1.7153 11 7 3.5077 -0.3061 -3.1867 12 6 4.3544 0.5784 -3.9910 13 1 4.7729 1.4033 -3.4145 14 6 5.3953 -0.1701 -4.8404 15 6 4.3284 -0.2386 -5.9457 16 1 4.7259 -0.0733 -6.9471 17 7 3.4721 -1.4243 -5.8621 18 6 2.8275 -1.8835 -6.9796 19 1 2.9500 -1.3713 -7.9224 20 6 2.0165 -3.0074 -6.9005 21 7 1.8676 -3.6320 -5.7516 22 14 1.1367 -3.6333 -8.4248 23 1 2.0024 -4.6133 -9.1288 24 1 -0.1341 -4.2912 -8.0278 25 1 0.8422 -2.4934 -9.3296 26 6 3.7065 1.0183 -5.3145 27 1 -0.3634 -1.0273 0.0255 28 1 -0.3633 0.5357 0.8771 29 1 -0.3633 0.4917 -0.9023 30 1 2.3297 -0.0536 2.0254 31 1 1.3134 -1.4643 1.5981 32 1 4.1710 -0.8291 0.6751 33 1 3.5345 -2.3661 1.3441 34 1 2.2764 -2.8430 -0.6583 35 1 3.7630 -2.1045 -1.3326 36 1 1.2694 -1.8082 -2.9390 37 1 0.2697 -1.9324 -1.4715 38 1 0.2850 -0.4218 -2.4129 39 1 3.3653 -1.2248 -3.4634 40 1 5.6689 -1.1449 -4.4366 41 1 6.2606 0.4373 -5.1057 42 1 3.3619 -1.8843 -5.0153 43 1 1.3013 -4.4175 -5.6964 44 1 4.1101 1.9506 -5.7096 45 1 2.6169 1.0029 -5.2936 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022665521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:17 Heat of formation + Delta-G solvation = -19.266156 kcal Electronic energy + Delta-G solvation = -23560.440629 eV Core-core repulsion = 20385.082549 eV Total energy + Delta-G solvation = -3175.358080 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.51329 -38.77665 -36.92087 -33.65924 -32.78667 -31.66508 -30.56419 -29.75493 -25.31686 -25.26787 -25.10160 -24.40274 -22.88576 -21.28320 -20.28263 -19.09102 -18.12156 -17.28563 -16.72601 -15.82146 -15.19305 -14.96533 -14.53829 -14.43550 -13.84361 -13.70290 -13.66046 -13.48281 -13.13729 -13.01913 -12.57865 -12.06980 -12.00678 -11.68889 -11.55759 -11.36140 -11.12604 -10.92647 -10.90786 -10.82961 -10.62187 -10.55961 -10.48546 -10.23839 -10.16823 -10.14080 -9.86427 -9.58533 -9.22797 -8.94809 -8.47750 -7.08458 -5.88868 -3.17229 3.03330 3.37960 3.44120 3.44937 3.56617 4.50415 4.56149 4.66290 4.85764 5.08085 5.22481 5.27440 5.33505 5.40622 5.43000 5.47247 5.53464 5.59001 5.66256 5.69189 5.84202 5.86228 5.90563 5.93463 6.01650 6.08487 6.10114 6.14196 6.16183 6.22862 6.29102 6.31787 6.37496 6.43005 6.56529 6.62099 6.68701 6.72142 6.86351 7.17944 7.64085 8.00494 8.30683 8.66445 9.41164 9.95525 10.29253 11.33773 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017167 B = 0.005605 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.656500 B = 4994.703158 C = 5906.076642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 H 0.094 0.906 4 C -0.117 4.117 5 C -0.125 4.125 6 C -0.112 4.112 7 C -0.078 4.078 8 C -0.142 4.142 9 C 0.529 3.471 10 O -0.554 6.554 11 N -0.698 5.698 12 C 0.123 3.877 13 H 0.089 0.911 14 C -0.168 4.168 15 C 0.164 3.836 16 H 0.065 0.935 17 N -0.703 5.703 18 C -0.242 4.242 19 H 0.073 0.927 20 C -0.010 4.010 21 N -0.932 5.932 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.187 4.187 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.408 0.592 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.378 0.622 43 H 0.256 0.744 44 H 0.076 0.924 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.849 4.476 11.209 12.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.113 0.887 4 C -0.154 4.154 5 C -0.162 4.162 6 C -0.150 4.150 7 C -0.081 4.081 8 C -0.199 4.199 9 C 0.315 3.685 10 O -0.433 6.433 11 N -0.351 5.351 12 C 0.017 3.983 13 H 0.107 0.893 14 C -0.207 4.207 15 C 0.052 3.948 16 H 0.083 0.917 17 N -0.344 5.344 18 C -0.373 4.373 19 H 0.091 0.909 20 C -0.206 4.206 21 N -0.580 5.580 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.229 4.229 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.247 0.753 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.214 0.786 43 H 0.066 0.934 44 H 0.094 0.906 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.885 5.206 11.256 12.544 hybrid contribution -0.659 -0.941 -0.764 1.380 sum 1.226 4.265 10.491 11.391 Atomic orbital electron populations 1.21969 0.95060 1.01670 1.01398 1.21792 0.95575 1.00945 0.92268 0.88748 1.22419 0.97157 0.98729 0.97124 1.22503 0.97913 0.99768 0.96055 1.22497 0.99447 0.96823 0.96223 1.21386 0.95806 0.95296 0.95642 1.22010 0.96609 1.01312 1.00003 1.20438 0.79403 0.87951 0.80676 1.90588 1.62424 1.19080 1.71199 1.45858 1.49246 1.15912 1.24049 1.21750 0.91945 0.93285 0.91291 0.89296 1.23851 0.97651 1.00624 0.98609 1.21205 0.90162 0.87563 0.95880 0.91701 1.42199 1.53660 1.28566 1.09987 1.19278 1.21044 1.07864 0.89137 0.90894 1.24722 1.00564 0.98242 0.97076 1.69608 1.42970 1.21924 1.23525 0.86164 0.78980 0.78636 0.82232 1.21685 1.21759 1.20763 1.24271 1.01747 1.00071 0.96790 0.92357 0.93188 0.92364 0.91924 0.91619 0.91655 0.91508 0.90222 0.91226 0.90573 0.91495 0.92255 0.75347 0.91174 0.89228 0.78625 0.93378 0.90578 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 7.89 37.16 0.29 -1.43 16 2 C -0.09 -1.18 3.10 -89.50 -0.28 -1.45 16 3 H 0.09 1.48 6.39 -51.93 -0.33 1.15 16 4 C -0.12 -1.33 6.36 -25.07 -0.16 -1.49 16 5 C -0.12 -1.46 6.91 -24.67 -0.17 -1.63 16 6 C -0.11 -1.49 5.87 -25.01 -0.15 -1.63 16 7 C -0.08 -1.16 0.77 -154.55 -0.12 -1.28 16 8 C -0.14 -2.18 7.09 37.16 0.26 -1.91 16 9 C 0.53 9.34 6.44 -10.98 -0.07 9.27 16 10 O -0.55 -11.14 14.81 5.56 0.08 -11.06 16 11 N -0.70 -12.32 4.72 -53.01 -0.25 -12.57 16 12 C 0.12 2.11 4.32 -67.12 -0.29 1.82 16 13 H 0.09 1.53 7.46 -51.93 -0.39 1.14 16 14 C -0.17 -2.70 7.58 -25.91 -0.20 -2.89 16 15 C 0.16 3.16 4.55 -67.12 -0.31 2.85 16 16 H 0.06 1.24 8.11 -51.93 -0.42 0.82 16 17 N -0.70 -16.50 5.17 -52.63 -0.27 -16.77 16 18 C -0.24 -6.40 9.97 -15.06 -0.15 -6.55 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 21 N -0.93 -25.97 13.06 55.49 0.72 -25.25 16 22 Si 0.91 21.58 29.55 -169.99 -5.02 16.55 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C -0.19 -3.35 7.68 -25.92 -0.20 -3.55 16 27 H 0.06 0.65 6.70 -51.93 -0.35 0.30 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.74 6.76 -51.93 -0.35 0.39 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.67 7.83 -51.93 -0.41 0.27 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.00 7.84 -51.93 -0.41 0.59 16 35 H 0.07 0.97 7.45 -51.93 -0.39 0.58 16 36 H 0.08 1.37 7.55 -51.93 -0.39 0.97 16 37 H 0.07 0.90 6.68 -51.93 -0.35 0.55 16 38 H 0.06 0.93 6.78 -51.93 -0.35 0.58 16 39 H 0.41 7.54 5.40 -40.82 -0.22 7.32 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.38 9.06 5.37 -40.82 -0.22 8.84 16 43 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 344.29 15.07 5.19 5.19 Total: -1.00 -28.81 344.29 -8.68 -37.49 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: -7.50 Total: 16.66 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -1.62 Total: -10.25 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.20 Total: -54.59 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.81 -8.68 -37.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022665521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.224 kcal (2) G-P(sol) polarization free energy of solvation -28.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds