Wall clock time and date at job start Tue Mar 31 2020 02:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 110.54074 * 2 1 4 4 C 1.54888 * 110.48362 * 237.38358 * 2 1 3 5 5 C 1.54896 * 102.74676 * 203.38410 * 4 2 1 6 6 C 1.54265 * 104.19820 * 37.94126 * 5 4 2 7 7 C 1.53877 * 106.59851 * 336.39263 * 6 5 4 8 8 C 1.53002 * 110.07066 * 119.30082 * 7 6 5 9 9 C 1.50695 * 110.03501 * 240.71293 * 7 6 5 10 10 O 1.21280 * 120.00212 * 117.16731 * 9 7 6 11 11 N 1.34771 * 119.99748 * 297.16743 * 9 7 6 12 12 C 1.46500 * 120.00506 * 359.97438 * 11 9 7 13 13 C 1.46502 * 120.00190 * 179.97438 * 11 9 7 14 14 C 1.53496 * 114.20689 * 119.99798 * 13 11 9 15 15 N 1.47065 * 87.98600 * 87.72390 * 14 13 11 16 16 C 1.36938 * 136.05841 * 207.09279 * 15 14 13 17 17 H 1.07999 * 120.00017 * 7.83782 * 16 15 14 18 18 C 1.38816 * 119.99728 * 187.84219 * 16 15 14 19 19 N 1.31618 * 119.99507 * 173.05780 * 18 16 15 20 20 Si 1.86798 * 120.00086 * 353.06108 * 18 16 15 21 21 H 1.48502 * 109.46881 * 175.20538 * 20 18 16 22 22 H 1.48502 * 109.47175 * 55.21314 * 20 18 16 23 23 H 1.48496 * 109.47134 * 295.20974 * 20 18 16 24 24 C 1.47072 * 87.88227 * 27.34123 * 15 14 13 25 25 H 1.08995 * 109.46783 * 297.39063 * 1 2 3 26 26 H 1.09007 * 109.46564 * 57.38625 * 1 2 3 27 27 H 1.09001 * 109.47081 * 177.38902 * 1 2 3 28 28 H 1.08996 * 110.75973 * 321.69507 * 4 2 1 29 29 H 1.08999 * 110.75378 * 85.07288 * 4 2 1 30 30 H 1.08997 * 110.48939 * 156.62689 * 5 4 2 31 31 H 1.09005 * 110.48203 * 279.26220 * 5 4 2 32 32 H 1.08993 * 110.03532 * 217.10981 * 6 5 4 33 33 H 1.09003 * 110.02956 * 95.67209 * 6 5 4 34 34 H 1.09005 * 109.46966 * 182.12043 * 8 7 6 35 35 H 1.08998 * 109.47439 * 302.11592 * 8 7 6 36 36 H 1.09004 * 109.46951 * 62.12570 * 8 7 6 37 37 H 1.08995 * 109.47119 * 270.00384 * 12 11 9 38 38 H 1.09002 * 109.46749 * 29.99793 * 12 11 9 39 39 H 1.09000 * 109.47678 * 149.99373 * 12 11 9 40 40 H 1.09005 * 113.28113 * 346.93570 * 13 11 9 41 41 H 1.08997 * 113.46717 * 332.93943 * 14 13 11 42 42 H 1.09003 * 113.52235 * 202.51154 * 14 13 11 43 43 H 0.96996 * 120.00464 * 1.51393 * 19 18 16 44 44 H 1.08994 * 113.46656 * 87.44698 * 24 15 14 45 45 H 1.09008 * 113.46579 * 217.87919 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0721 -0.7821 -1.2221 5 6 3.4907 -1.1981 -0.7599 6 6 3.3166 -1.5406 0.7342 7 6 2.0699 -0.7788 1.2174 8 6 1.0134 -1.7653 1.7189 9 6 2.4449 0.1794 2.3183 10 8 2.2999 1.3729 2.1590 11 7 2.9414 -0.2899 3.4800 12 6 3.1161 -1.7317 3.6728 13 6 3.3066 0.6416 4.5501 14 6 2.5370 0.4273 5.8608 15 7 3.5722 -0.5422 6.2496 16 6 3.6351 -1.6477 7.0553 17 1 2.7320 -2.0535 7.4868 18 6 4.8596 -2.2467 7.3175 19 7 4.9399 -3.2223 8.1973 20 14 6.3933 -1.6680 6.4218 21 1 7.5795 -2.3813 6.9598 22 1 6.5618 -0.2063 6.6223 23 1 6.2579 -1.9564 4.9714 24 6 4.5119 0.2018 5.3973 25 1 -0.3633 0.4728 0.9124 26 1 -0.3633 0.5539 -0.8657 27 1 -0.3633 -1.0266 -0.0468 28 1 1.4581 -1.6601 -1.4222 29 1 2.1252 -0.1383 -2.1001 30 1 3.8316 -2.0723 -1.3145 31 1 4.1898 -0.3709 -0.8827 32 1 4.1927 -1.2172 1.2960 33 1 3.1691 -2.6137 0.8565 34 1 0.1210 -1.2183 2.0233 35 1 0.7579 -2.4614 0.9200 36 1 1.4085 -2.3189 2.5708 37 1 2.2072 -2.1537 4.1015 38 1 3.3182 -2.2048 2.7118 39 1 3.9530 -1.9092 4.3482 40 1 3.3491 1.6801 4.2215 41 1 1.5538 -0.0211 5.7185 42 1 2.5087 1.3111 6.4982 43 1 4.1400 -3.5376 8.6463 44 1 5.0050 1.0265 5.9118 45 1 5.2113 -0.4389 4.8601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043772636.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:45 Heat of formation + Delta-G solvation = 32.741929 kcal Electronic energy + Delta-G solvation = -23995.776390 eV Core-core repulsion = 20822.673550 eV Total energy + Delta-G solvation = -3173.102840 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.88681 -38.91567 -37.12621 -34.47809 -32.43127 -31.74242 -30.77908 -28.11323 -26.55648 -25.85389 -25.36430 -25.00238 -22.94987 -21.15667 -20.70939 -18.88652 -18.21551 -17.44808 -16.51055 -16.37333 -15.47223 -15.25003 -14.77777 -14.38348 -14.15473 -13.79029 -13.69487 -13.60294 -13.25697 -12.98536 -12.65613 -12.39461 -12.30292 -12.17854 -11.81621 -11.41243 -11.32266 -11.09166 -10.99609 -10.89419 -10.77178 -10.64996 -10.60868 -10.50552 -10.43463 -10.36532 -9.41755 -9.33827 -9.20759 -8.91066 -8.13160 -7.18286 -6.37001 -3.27617 2.87159 3.27236 3.32412 3.39288 3.58529 4.33602 4.46371 4.52533 4.59665 4.71044 4.97927 5.12247 5.17055 5.20955 5.25467 5.37112 5.37765 5.43625 5.50531 5.63997 5.65376 5.70046 5.79876 5.80432 5.83540 5.87999 5.92309 5.98479 6.03959 6.05029 6.13970 6.18246 6.21662 6.22985 6.26046 6.36770 6.38588 6.45734 6.64923 7.03458 7.06603 7.81496 8.18967 8.46737 8.92757 9.44969 10.32695 11.15402 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025699 B = 0.005383 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.273413 B = 5200.054690 C = 5464.682227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.078 4.078 3 H 0.092 0.908 4 C -0.119 4.119 5 C -0.123 4.123 6 C -0.116 4.116 7 C -0.076 4.076 8 C -0.153 4.153 9 C 0.524 3.476 10 O -0.551 6.551 11 N -0.578 5.578 12 C 0.071 3.929 13 C 0.097 3.903 14 C 0.110 3.890 15 N -0.625 5.625 16 C -0.302 4.302 17 H 0.082 0.918 18 C -0.024 4.024 19 N -0.933 5.933 20 Si 1.067 2.933 21 H -0.295 1.295 22 H -0.287 1.287 23 H -0.293 1.293 24 C 0.087 3.913 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.261 0.739 44 H 0.057 0.943 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.722 3.496 -18.080 19.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.097 4.097 3 H 0.110 0.890 4 C -0.156 4.156 5 C -0.161 4.161 6 C -0.154 4.154 7 C -0.079 4.079 8 C -0.210 4.210 9 C 0.312 3.688 10 O -0.429 6.429 11 N -0.308 5.308 12 C -0.071 4.071 13 C -0.008 4.008 14 C -0.017 4.017 15 N -0.354 5.354 16 C -0.428 4.428 17 H 0.100 0.900 18 C -0.223 4.223 19 N -0.575 5.575 20 Si 0.900 3.100 21 H -0.222 1.222 22 H -0.214 1.214 23 H -0.222 1.222 24 C -0.039 4.039 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.153 3.627 -18.097 18.918 hybrid contribution -1.637 0.208 0.529 1.733 sum -5.790 3.834 -17.568 18.891 Atomic orbital electron populations 1.21853 0.94975 1.01525 1.01568 1.21919 0.95648 1.00080 0.92056 0.88998 1.22568 0.96031 0.99655 0.97366 1.22349 0.97325 1.01122 0.95299 1.22339 0.96621 1.00132 0.96287 1.21364 0.96913 0.95479 0.94188 1.22265 0.98205 0.98468 1.02083 1.20507 0.76500 0.89047 0.82709 1.90615 1.54807 1.16625 1.80867 1.47311 1.62155 1.07687 1.13674 1.22248 1.03840 0.79143 1.01894 1.22509 0.97902 0.93088 0.87312 1.22767 0.94295 0.92874 0.91803 1.46109 1.07063 1.26929 1.55276 1.20088 0.95873 1.01882 1.24956 0.90032 1.25669 0.99564 0.98244 0.98777 1.70915 1.30880 1.30016 1.25708 0.83753 0.76267 0.75346 0.74618 1.22218 1.21401 1.22183 1.23179 0.93985 0.95495 0.91246 0.92549 0.92954 0.92423 0.91444 0.91571 0.91471 0.91571 0.91104 0.90472 0.91962 0.91635 0.90675 0.92386 0.91307 0.88873 0.87781 0.93577 0.93552 0.92870 0.92572 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 7.97 37.16 0.30 -1.19 16 2 C -0.08 -0.91 2.70 -88.95 -0.24 -1.15 16 3 H 0.09 1.28 6.88 -51.93 -0.36 0.92 16 4 C -0.12 -1.11 6.33 -24.74 -0.16 -1.27 16 5 C -0.12 -1.20 6.83 -25.07 -0.17 -1.38 16 6 C -0.12 -1.33 4.23 -25.61 -0.11 -1.43 16 7 C -0.08 -0.97 0.54 -154.54 -0.08 -1.05 16 8 C -0.15 -1.76 6.69 37.16 0.25 -1.51 16 9 C 0.52 8.64 6.27 -10.99 -0.07 8.57 16 10 O -0.55 -10.49 14.91 5.56 0.08 -10.41 16 11 N -0.58 -10.03 3.09 -173.56 -0.54 -10.57 16 12 C 0.07 1.20 7.61 59.85 0.46 1.66 16 13 C 0.10 1.81 4.67 -67.68 -0.32 1.49 16 14 C 0.11 2.20 8.31 -8.51 -0.07 2.13 16 15 N -0.62 -14.67 2.40 -184.63 -0.44 -15.11 16 16 C -0.30 -8.27 10.70 -15.06 -0.16 -8.43 16 17 H 0.08 2.39 8.05 -52.49 -0.42 1.97 16 18 C -0.02 -0.67 5.50 -17.43 -0.10 -0.77 16 19 N -0.93 -28.61 13.71 55.49 0.76 -27.85 16 20 Si 1.07 25.96 24.77 -169.99 -4.21 21.75 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.29 -6.62 6.16 56.52 0.35 -6.27 16 23 H -0.29 -6.60 6.52 56.52 0.37 -6.23 16 24 C 0.09 1.81 4.73 -8.37 -0.04 1.77 16 25 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.53 6.61 -51.93 -0.34 0.19 16 28 H 0.07 0.57 8.04 -51.93 -0.42 0.15 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.91 7.01 -51.93 -0.36 0.55 16 33 H 0.08 0.79 7.12 -51.93 -0.37 0.42 16 34 H 0.06 0.74 6.69 -51.93 -0.35 0.39 16 35 H 0.06 0.62 7.62 -51.93 -0.40 0.23 16 36 H 0.07 0.92 4.42 -51.93 -0.23 0.69 16 37 H 0.06 0.99 6.96 -51.93 -0.36 0.63 16 38 H 0.07 0.96 3.71 -51.93 -0.19 0.77 16 39 H 0.09 1.90 4.97 -51.93 -0.26 1.64 16 40 H 0.10 1.86 7.29 -51.93 -0.38 1.48 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.26 7.93 8.73 -40.82 -0.36 7.58 16 44 H 0.06 1.14 7.67 -51.93 -0.40 0.74 16 45 H 0.06 1.17 3.90 -51.92 -0.20 0.97 16 LS Contribution 323.95 15.07 4.88 4.88 Total: -1.00 -31.04 323.95 -7.19 -38.23 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.21 Total: 1.64 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -0.51 Total: -2.57 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.22 Total: -53.53 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -4.21 Total: 21.75 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.04 -7.19 -38.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043772636.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.975 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds