Wall clock time and date at job start Tue Mar 31 2020 02:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 110.54074 * 2 1 4 4 C 1.54888 * 110.48362 * 237.38358 * 2 1 3 5 5 C 1.54896 * 102.74676 * 203.38410 * 4 2 1 6 6 C 1.54265 * 104.19820 * 37.94126 * 5 4 2 7 7 C 1.53877 * 106.59851 * 336.39263 * 6 5 4 8 8 C 1.53002 * 110.07066 * 119.30082 * 7 6 5 9 9 C 1.50695 * 110.03501 * 240.71293 * 7 6 5 10 10 O 1.21280 * 120.00212 * 117.16731 * 9 7 6 11 11 N 1.34771 * 119.99748 * 297.16743 * 9 7 6 12 12 C 1.46500 * 120.00506 * 359.97438 * 11 9 7 13 13 C 1.46502 * 120.00190 * 179.97438 * 11 9 7 14 14 C 1.53496 * 114.20689 * 119.99798 * 13 11 9 15 15 N 1.47065 * 87.98600 * 87.72390 * 14 13 11 16 16 C 1.36938 * 136.05841 * 207.09279 * 15 14 13 17 17 H 1.07999 * 120.00017 * 7.83782 * 16 15 14 18 18 C 1.38816 * 119.99728 * 187.84219 * 16 15 14 19 19 N 1.31618 * 119.99507 * 173.05780 * 18 16 15 20 20 Si 1.86798 * 120.00086 * 353.06108 * 18 16 15 21 21 H 1.48502 * 109.46881 * 175.20538 * 20 18 16 22 22 H 1.48502 * 109.47175 * 55.21314 * 20 18 16 23 23 H 1.48496 * 109.47134 * 295.20974 * 20 18 16 24 24 C 1.47072 * 87.88227 * 27.34123 * 15 14 13 25 25 H 1.08995 * 109.46783 * 297.39063 * 1 2 3 26 26 H 1.09007 * 109.46564 * 57.38625 * 1 2 3 27 27 H 1.09001 * 109.47081 * 177.38902 * 1 2 3 28 28 H 1.08996 * 110.75973 * 321.69507 * 4 2 1 29 29 H 1.08999 * 110.75378 * 85.07288 * 4 2 1 30 30 H 1.08997 * 110.48939 * 156.62689 * 5 4 2 31 31 H 1.09005 * 110.48203 * 279.26220 * 5 4 2 32 32 H 1.08993 * 110.03532 * 217.10981 * 6 5 4 33 33 H 1.09003 * 110.02956 * 95.67209 * 6 5 4 34 34 H 1.09005 * 109.46966 * 182.12043 * 8 7 6 35 35 H 1.08998 * 109.47439 * 302.11592 * 8 7 6 36 36 H 1.09004 * 109.46951 * 62.12570 * 8 7 6 37 37 H 1.08995 * 109.47119 * 270.00384 * 12 11 9 38 38 H 1.09002 * 109.46749 * 29.99793 * 12 11 9 39 39 H 1.09000 * 109.47678 * 149.99373 * 12 11 9 40 40 H 1.09005 * 113.28113 * 346.93570 * 13 11 9 41 41 H 1.08997 * 113.46717 * 332.93943 * 14 13 11 42 42 H 1.09003 * 113.52235 * 202.51154 * 14 13 11 43 43 H 0.96996 * 120.00464 * 1.51393 * 19 18 16 44 44 H 1.08994 * 113.46656 * 87.44698 * 24 15 14 45 45 H 1.09008 * 113.46579 * 217.87919 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0721 -0.7821 -1.2221 5 6 3.4907 -1.1981 -0.7599 6 6 3.3166 -1.5406 0.7342 7 6 2.0699 -0.7788 1.2174 8 6 1.0134 -1.7653 1.7189 9 6 2.4449 0.1794 2.3183 10 8 2.2999 1.3729 2.1590 11 7 2.9414 -0.2899 3.4800 12 6 3.1161 -1.7317 3.6728 13 6 3.3066 0.6416 4.5501 14 6 2.5370 0.4273 5.8608 15 7 3.5722 -0.5422 6.2496 16 6 3.6351 -1.6477 7.0553 17 1 2.7320 -2.0535 7.4868 18 6 4.8596 -2.2467 7.3175 19 7 4.9399 -3.2223 8.1973 20 14 6.3933 -1.6680 6.4218 21 1 7.5795 -2.3813 6.9598 22 1 6.5618 -0.2063 6.6223 23 1 6.2579 -1.9564 4.9714 24 6 4.5119 0.2018 5.3973 25 1 -0.3633 0.4728 0.9124 26 1 -0.3633 0.5539 -0.8657 27 1 -0.3633 -1.0266 -0.0468 28 1 1.4581 -1.6601 -1.4222 29 1 2.1252 -0.1383 -2.1001 30 1 3.8316 -2.0723 -1.3145 31 1 4.1898 -0.3709 -0.8827 32 1 4.1927 -1.2172 1.2960 33 1 3.1691 -2.6137 0.8565 34 1 0.1210 -1.2183 2.0233 35 1 0.7579 -2.4614 0.9200 36 1 1.4085 -2.3189 2.5708 37 1 2.2072 -2.1537 4.1015 38 1 3.3182 -2.2048 2.7118 39 1 3.9530 -1.9092 4.3482 40 1 3.3491 1.6801 4.2215 41 1 1.5538 -0.0211 5.7185 42 1 2.5087 1.3111 6.4982 43 1 4.1400 -3.5376 8.6463 44 1 5.0050 1.0265 5.9118 45 1 5.2113 -0.4389 4.8601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043772636.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:44 Heat of formation + Delta-G solvation = 13.665744 kcal Electronic energy + Delta-G solvation = -23996.603595 eV Core-core repulsion = 20822.673550 eV Total energy + Delta-G solvation = -3173.930045 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.12359 -40.36003 -38.38165 -35.93450 -34.48835 -32.58230 -31.85614 -29.90953 -27.96935 -27.05989 -26.69281 -26.04561 -24.55347 -22.56512 -21.73181 -20.41706 -19.56348 -19.19062 -17.87015 -17.65648 -16.95523 -16.52317 -16.00675 -15.80519 -15.59901 -15.25771 -15.11890 -14.84369 -14.54707 -14.31565 -13.87902 -13.51348 -13.48127 -13.24864 -13.12876 -13.06758 -12.62944 -12.44686 -12.34071 -12.18743 -12.13178 -11.82059 -11.65970 -11.49834 -11.38361 -11.33343 -11.30203 -11.16462 -11.00147 -10.60762 -9.59880 -9.18932 -8.62402 -5.44962 1.37901 1.46374 1.56784 1.65910 1.94257 2.53061 2.91205 3.24195 3.36888 3.50171 3.60376 3.67170 4.01669 4.18118 4.26965 4.28525 4.31601 4.38513 4.41786 4.53629 4.53862 4.60257 4.61166 4.66254 4.69011 4.74369 4.81569 4.88079 4.91985 4.96341 5.01390 5.08177 5.10796 5.16194 5.21514 5.24197 5.32149 5.36824 5.43612 5.56155 5.62140 5.95696 6.45880 6.70953 7.13165 7.33019 8.27619 8.92805 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025699 B = 0.005383 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.273413 B = 5200.054690 C = 5464.682227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.080 4.080 3 H 0.065 0.935 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.075 4.075 8 C -0.150 4.150 9 C 0.521 3.479 10 O -0.578 6.578 11 N -0.583 5.583 12 C 0.081 3.919 13 C 0.113 3.887 14 C 0.111 3.889 15 N -0.646 5.646 16 C -0.280 4.280 17 H 0.050 0.950 18 C -0.076 4.076 19 N -0.971 5.971 20 Si 1.100 2.900 21 H -0.308 1.308 22 H -0.266 1.266 23 H -0.266 1.266 24 C 0.085 3.915 25 H 0.035 0.965 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.117 0.883 41 H 0.041 0.959 42 H 0.064 0.936 43 H 0.247 0.753 44 H 0.070 0.930 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.816 3.834 -21.082 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.099 4.099 3 H 0.083 0.917 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.156 4.156 7 C -0.078 4.078 8 C -0.207 4.207 9 C 0.312 3.688 10 O -0.459 6.459 11 N -0.313 5.313 12 C -0.061 4.061 13 C 0.007 3.993 14 C -0.016 4.016 15 N -0.375 5.375 16 C -0.407 4.407 17 H 0.068 0.932 18 C -0.269 4.269 19 N -0.616 5.616 20 Si 0.927 3.073 21 H -0.236 1.236 22 H -0.191 1.191 23 H -0.193 1.193 24 C -0.040 4.040 25 H 0.054 0.946 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.135 0.865 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.087 0.913 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.286 4.001 -21.136 21.934 hybrid contribution -1.739 0.177 1.455 2.274 sum -6.025 4.178 -19.681 21.002 Atomic orbital electron populations 1.21832 0.94114 1.02577 1.01070 1.21911 0.96371 0.98841 0.92756 0.91696 1.22554 0.95706 1.00091 0.96407 1.22350 0.97545 1.01751 0.94148 1.22387 0.95064 1.00856 0.97338 1.21472 0.98032 0.95147 0.93123 1.22259 0.97385 0.98379 1.02685 1.21254 0.75340 0.89367 0.82878 1.90600 1.55794 1.18133 1.81326 1.47425 1.62472 1.07650 1.13794 1.22169 1.02082 0.79135 1.02762 1.22311 0.96017 0.93983 0.86987 1.22923 0.93498 0.92380 0.92803 1.46078 1.09425 1.26970 1.55034 1.19864 0.94503 1.02745 1.23612 0.93248 1.26830 1.02583 0.98184 0.99257 1.71020 1.30278 1.32199 1.28093 0.83374 0.72691 0.76027 0.75161 1.23595 1.19131 1.19281 1.23332 0.94420 0.95260 0.91024 0.94608 0.91789 0.90709 0.89625 0.90545 0.89388 0.92368 0.92758 0.88704 0.92623 0.88836 0.91561 0.93097 0.88220 0.92090 0.86542 0.94033 0.91870 0.94403 0.91257 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 7.97 71.98 0.57 -2.00 16 2 C -0.08 -1.68 2.70 -9.71 -0.03 -1.71 16 3 H 0.06 1.74 6.88 -2.39 -0.02 1.72 16 4 C -0.11 -1.66 6.33 31.89 0.20 -1.45 16 5 C -0.12 -1.94 6.83 31.67 0.22 -1.72 16 6 C -0.12 -2.36 4.23 31.32 0.13 -2.23 16 7 C -0.07 -1.73 0.54 -52.20 -0.03 -1.76 16 8 C -0.15 -3.06 6.69 71.98 0.48 -2.58 16 9 C 0.52 16.50 6.27 87.66 0.55 17.05 16 10 O -0.58 -21.57 14.91 -3.03 -0.05 -21.61 16 11 N -0.58 -19.50 3.09 -821.42 -2.54 -22.04 16 12 C 0.08 2.64 7.61 127.77 0.97 3.61 16 13 C 0.11 4.02 4.67 45.55 0.21 4.23 16 14 C 0.11 4.31 8.31 83.18 0.69 5.00 16 15 N -0.65 -29.98 2.40 -738.03 -1.77 -31.75 16 16 C -0.28 -15.60 10.70 84.03 0.90 -14.70 16 17 H 0.05 3.02 8.05 -2.91 -0.02 2.99 16 18 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 19 N -0.97 -61.26 13.71 21.65 0.30 -60.97 16 20 Si 1.10 51.89 24.77 68.60 1.70 53.59 16 21 H -0.31 -15.10 7.11 99.48 0.71 -14.40 16 22 H -0.27 -11.49 6.16 99.48 0.61 -10.88 16 23 H -0.27 -11.26 6.52 99.48 0.65 -10.61 16 24 C 0.08 3.38 4.73 83.26 0.39 3.77 16 25 H 0.03 0.80 7.67 -2.39 -0.02 0.78 16 26 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.07 1.12 6.61 -2.39 -0.02 1.10 16 28 H 0.09 1.02 8.04 -2.39 -0.02 1.00 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.05 1.27 7.01 -2.39 -0.02 1.26 16 33 H 0.09 1.56 7.12 -2.39 -0.02 1.54 16 34 H 0.05 1.21 6.69 -2.38 -0.02 1.19 16 35 H 0.09 1.39 7.62 -2.39 -0.02 1.38 16 36 H 0.07 1.47 4.42 -2.38 -0.01 1.46 16 37 H 0.05 1.72 6.96 -2.39 -0.02 1.70 16 38 H 0.10 2.58 3.71 -2.39 -0.01 2.58 16 39 H 0.06 2.42 4.97 -2.39 -0.01 2.41 16 40 H 0.12 3.94 7.29 -2.38 -0.02 3.92 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.25 15.68 8.73 -92.71 -0.81 14.87 16 44 H 0.07 2.62 7.67 -2.39 -0.02 2.60 16 45 H 0.05 2.17 3.90 -2.38 -0.01 2.16 16 Total: -1.00 -68.59 323.95 4.16 -64.43 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.79 Total: 16.78 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 5.74 Total: 1.57 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -4.02 Total: -114.76 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.05 Total: -21.61 kcal Atomic # 14 Polarization: 51.89 SS G_CDS: 1.70 Total: 53.59 kcal Total: -68.59 4.16 -64.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043772636.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.094 kcal (2) G-P(sol) polarization free energy of solvation -68.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds