Wall clock time and date at job start Tue Mar 31 2020 02:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.43013 * 2 1 4 4 C 1.54888 * 110.48755 * 122.54496 * 2 1 3 5 5 C 1.55235 * 102.58670 * 156.68058 * 4 2 1 6 6 C 1.54260 * 104.23201 * 322.07876 * 5 4 2 7 7 C 1.53873 * 106.59791 * 23.61790 * 6 5 4 8 8 C 1.53006 * 110.03076 * 240.71204 * 7 6 5 9 9 C 1.50696 * 110.07707 * 119.30774 * 7 6 5 10 10 O 1.21289 * 119.99838 * 242.80967 * 9 7 6 11 11 N 1.34777 * 120.00523 * 62.80322 * 9 7 6 12 12 C 1.46500 * 119.99350 * 0.02562 * 11 9 7 13 13 C 1.46494 * 120.00359 * 180.02562 * 11 9 7 14 14 C 1.53942 * 113.74292 * 216.67841 * 13 11 9 15 15 N 1.47588 * 86.11624 * 222.04784 * 14 13 11 16 16 C 1.36932 * 134.49251 * 204.63569 * 15 14 13 17 17 H 1.07997 * 120.00520 * 173.47865 * 16 15 14 18 18 C 1.38817 * 119.99855 * 353.48986 * 16 15 14 19 19 N 1.31614 * 120.00317 * 5.05667 * 18 16 15 20 20 Si 1.86803 * 119.99682 * 185.06188 * 18 16 15 21 21 H 1.48510 * 109.47169 * 94.98576 * 20 18 16 22 22 H 1.48500 * 109.47191 * 214.98172 * 20 18 16 23 23 H 1.48500 * 109.47453 * 334.98653 * 20 18 16 24 24 C 1.47578 * 91.01219 * 24.64075 * 15 14 13 25 25 H 1.08999 * 109.46842 * 180.69941 * 1 2 3 26 26 H 1.08997 * 109.47393 * 300.69485 * 1 2 3 27 27 H 1.08998 * 109.47154 * 60.70338 * 1 2 3 28 28 H 1.09004 * 110.75009 * 275.07126 * 4 2 1 29 29 H 1.08996 * 110.75775 * 38.43733 * 4 2 1 30 30 H 1.09001 * 110.46553 * 203.39216 * 5 4 2 31 31 H 1.08997 * 110.58600 * 80.82879 * 5 4 2 32 32 H 1.08999 * 110.03580 * 264.32884 * 6 5 4 33 33 H 1.09004 * 110.03318 * 142.89814 * 6 5 4 34 34 H 1.09005 * 109.47211 * 177.16356 * 8 7 6 35 35 H 1.08997 * 109.47157 * 297.16837 * 8 7 6 36 36 H 1.09002 * 109.46845 * 57.16631 * 8 7 6 37 37 H 1.09001 * 109.47556 * 89.99859 * 12 11 9 38 38 H 1.09005 * 109.46791 * 209.99694 * 12 11 9 39 39 H 1.08997 * 109.47200 * 329.99508 * 12 11 9 40 40 H 1.09004 * 112.94463 * 348.40953 * 13 11 9 41 41 H 1.09002 * 113.77175 * 336.34822 * 14 13 11 42 42 H 1.09002 * 113.77221 * 107.74797 * 14 13 11 43 43 H 0.97004 * 120.00292 * 180.02562 * 19 18 16 44 44 H 1.09001 * 113.76840 * 221.05577 * 24 15 14 45 45 H 1.08998 * 113.77059 * 89.66052 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0721 -0.7805 1.2231 5 6 3.4938 -1.1946 0.7571 6 6 3.3186 -1.5368 -0.7368 7 6 2.0700 -0.7772 -1.2183 8 6 1.0152 -1.7663 -1.7184 9 6 2.4408 0.1821 -2.3197 10 8 2.2930 1.3753 -2.1599 11 7 2.9368 -0.2857 -3.4823 12 6 3.1149 -1.7270 -3.6754 13 6 3.2978 0.6469 -4.5528 14 6 2.9896 0.1183 -5.9654 15 7 4.3000 0.6771 -6.3514 16 6 4.8490 1.1116 -7.5282 17 1 5.8199 1.5845 -7.5291 18 6 4.1574 0.9443 -8.7201 19 7 2.9337 0.4598 -8.7086 20 14 4.9635 1.4069 -10.3405 21 1 5.5877 0.2023 -10.9446 22 1 3.9375 1.9499 -11.2666 23 1 6.0064 2.4361 -10.0986 24 6 4.7809 0.5795 -4.9596 25 1 -0.3633 -1.0276 0.0125 26 1 -0.3634 0.5246 0.8836 27 1 -0.3633 0.5029 -0.8962 28 1 2.1229 -0.1362 2.1008 29 1 1.4595 -1.6596 1.4228 30 1 3.8370 -2.0685 1.3109 31 1 4.1933 -0.3677 0.8795 32 1 3.1731 -2.6101 -0.8595 33 1 4.1936 -1.2115 -1.2996 34 1 0.1165 -1.2226 -2.0099 35 1 1.4059 -2.3101 -2.5785 36 1 0.7718 -2.4708 -0.9231 37 1 2.2064 -2.1514 -4.1028 38 1 3.9511 -1.9022 -4.3523 39 1 3.3198 -2.1996 -2.7149 40 1 2.9375 1.6599 -4.3732 41 1 2.9404 -0.9688 -6.0267 42 1 2.1436 0.6114 -6.4442 43 1 2.4506 0.3425 -9.5416 44 1 5.3651 1.4407 -4.6352 45 1 5.2579 -0.3722 -4.7253 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043772638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:47 Heat of formation + Delta-G solvation = 19.906164 kcal Electronic energy + Delta-G solvation = -23395.494523 eV Core-core repulsion = 20221.835082 eV Total energy + Delta-G solvation = -3173.659441 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.80127 -38.44695 -36.95564 -34.64279 -32.15103 -31.72989 -30.74475 -27.56885 -26.84549 -25.87025 -25.09247 -24.79843 -23.29658 -21.22816 -20.51307 -18.62878 -18.26525 -16.85755 -16.47925 -16.26299 -15.41746 -14.90740 -14.81515 -14.52100 -14.18908 -13.84508 -13.60469 -13.43796 -12.91090 -12.61416 -12.43182 -12.33969 -12.24979 -11.83076 -11.57495 -11.40846 -11.31622 -11.22791 -11.06618 -10.88323 -10.79871 -10.72437 -10.68302 -10.53297 -10.45552 -10.19173 -10.04922 -9.56601 -9.21467 -8.80679 -8.08236 -6.90565 -5.81204 -3.13054 2.94233 3.32527 3.39131 3.44517 3.45930 4.32299 4.42811 4.47273 4.58851 4.94869 5.11444 5.17261 5.20907 5.23163 5.29774 5.37519 5.45000 5.49126 5.50710 5.53866 5.60356 5.66974 5.75463 5.76813 5.81685 5.85223 5.90917 5.97189 6.04427 6.08351 6.11846 6.17690 6.25603 6.27587 6.43510 6.47108 6.59832 6.83678 7.18795 7.35069 7.52108 7.84029 7.94082 8.53928 9.01264 9.67153 10.55596 11.36576 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.038813 B = 0.003851 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.241694 B = 7269.919353 C = 7383.610355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 H 0.092 0.908 4 C -0.119 4.119 5 C -0.124 4.124 6 C -0.115 4.115 7 C -0.079 4.079 8 C -0.152 4.152 9 C 0.521 3.479 10 O -0.546 6.546 11 N -0.597 5.597 12 C 0.066 3.934 13 C 0.090 3.910 14 C 0.161 3.839 15 N -0.606 5.606 16 C -0.224 4.224 17 H 0.082 0.918 18 C -0.005 4.005 19 N -0.919 5.919 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.108 3.892 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.033 0.967 42 H 0.071 0.929 43 H 0.254 0.746 44 H 0.045 0.955 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.947 -7.739 18.798 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.098 4.098 3 H 0.110 0.890 4 C -0.156 4.156 5 C -0.161 4.161 6 C -0.152 4.152 7 C -0.082 4.082 8 C -0.209 4.209 9 C 0.309 3.691 10 O -0.423 6.423 11 N -0.328 5.328 12 C -0.077 4.077 13 C -0.014 4.014 14 C 0.034 3.966 15 N -0.332 5.332 16 C -0.352 4.352 17 H 0.100 0.900 18 C -0.202 4.202 19 N -0.565 5.565 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.205 1.205 24 C -0.020 4.020 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.131 0.869 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.011 -7.035 18.490 20.011 hybrid contribution 0.487 0.003 -1.135 1.236 sum -2.524 -7.032 17.355 18.895 Atomic orbital electron populations 1.21864 0.94981 1.01525 1.01671 1.21919 0.95683 1.00185 0.92028 0.88981 1.22621 0.95923 0.99646 0.97425 1.22401 0.97373 1.01107 0.95260 1.22316 0.96685 0.99849 0.96375 1.21394 0.96774 0.95568 0.94482 1.22258 0.98441 0.98413 1.01824 1.20510 0.76598 0.89065 0.82949 1.90642 1.54413 1.16721 1.80543 1.47943 1.62740 1.07352 1.14798 1.22165 1.02140 0.80903 1.02493 1.24013 0.96612 0.94418 0.86340 1.22555 0.91089 0.96225 0.86702 1.45642 1.11856 1.72712 1.03025 1.19006 1.01681 1.31962 0.82533 0.90032 1.24828 0.96667 1.01112 0.97601 1.69835 1.10326 1.50410 1.25946 0.86100 0.78308 0.77876 0.83504 1.21581 1.21640 1.20478 1.22975 0.94344 0.98245 0.86387 0.92432 0.92953 0.92439 0.91562 0.91488 0.91583 0.91532 0.90664 0.91094 0.91777 0.90952 0.91712 0.92356 0.90660 0.90509 0.86858 0.94918 0.91032 0.93555 0.93640 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 7.97 37.16 0.30 -1.19 16 2 C -0.08 -0.91 2.69 -88.96 -0.24 -1.15 16 3 H 0.09 1.30 6.88 -51.93 -0.36 0.94 16 4 C -0.12 -1.06 6.36 -24.55 -0.16 -1.21 16 5 C -0.12 -1.11 6.84 -24.89 -0.17 -1.28 16 6 C -0.11 -1.14 4.23 -25.62 -0.11 -1.25 16 7 C -0.08 -0.94 0.54 -154.54 -0.08 -1.02 16 8 C -0.15 -1.55 6.68 37.16 0.25 -1.30 16 9 C 0.52 8.52 6.28 -10.99 -0.07 8.45 16 10 O -0.55 -10.94 14.89 5.55 0.08 -10.85 16 11 N -0.60 -9.85 3.07 -175.75 -0.54 -10.38 16 12 C 0.07 0.87 7.11 59.85 0.43 1.29 16 13 C 0.09 1.83 4.40 -70.15 -0.31 1.52 16 14 C 0.16 3.80 6.84 -2.97 -0.02 3.78 16 15 N -0.61 -15.77 3.70 -178.08 -0.66 -16.42 16 16 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 17 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 18 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 19 N -0.92 -27.28 11.51 55.49 0.64 -26.64 16 20 Si 0.91 22.18 29.56 -169.99 -5.02 17.15 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.11 2.29 8.46 -2.98 -0.03 2.26 16 25 H 0.06 0.51 6.52 -51.93 -0.34 0.17 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.69 7.76 -51.93 -0.40 0.29 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.61 7.12 -51.93 -0.37 0.24 16 33 H 0.07 0.80 7.02 -51.93 -0.36 0.43 16 34 H 0.06 0.71 6.68 -51.93 -0.35 0.36 16 35 H 0.07 0.71 4.40 -51.93 -0.23 0.49 16 36 H 0.06 0.53 7.65 -51.93 -0.40 0.14 16 37 H 0.06 0.73 6.95 -51.93 -0.36 0.36 16 38 H 0.07 1.07 6.36 -51.93 -0.33 0.74 16 39 H 0.08 0.79 3.72 -51.93 -0.19 0.60 16 40 H 0.11 2.53 7.24 -51.93 -0.38 2.16 16 41 H 0.03 0.76 6.71 -51.93 -0.35 0.42 16 42 H 0.07 1.90 7.35 -51.93 -0.38 1.52 16 43 H 0.25 7.30 8.31 -40.82 -0.34 6.97 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.03 0.68 6.97 -51.93 -0.36 0.32 16 LS Contribution 332.88 15.07 5.02 5.02 Total: -1.00 -32.22 332.88 -8.19 -40.41 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.24 Total: -0.41 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -0.47 Total: 2.13 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.56 Total: -53.45 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.85 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.22 -8.19 -40.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043772638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.313 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds