Wall clock time and date at job start Tue Mar 31 2020 02:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.43013 * 2 1 4 4 C 1.54888 * 110.48755 * 122.54496 * 2 1 3 5 5 C 1.55235 * 102.58670 * 156.68058 * 4 2 1 6 6 C 1.54260 * 104.23201 * 322.07876 * 5 4 2 7 7 C 1.53873 * 106.59791 * 23.61790 * 6 5 4 8 8 C 1.53006 * 110.03076 * 240.71204 * 7 6 5 9 9 C 1.50696 * 110.07707 * 119.30774 * 7 6 5 10 10 O 1.21289 * 119.99838 * 242.80967 * 9 7 6 11 11 N 1.34777 * 120.00523 * 62.80322 * 9 7 6 12 12 C 1.46500 * 119.99350 * 0.02562 * 11 9 7 13 13 C 1.46494 * 120.00359 * 180.02562 * 11 9 7 14 14 C 1.53942 * 113.74292 * 216.67841 * 13 11 9 15 15 N 1.47588 * 86.11624 * 222.04784 * 14 13 11 16 16 C 1.36932 * 134.49251 * 204.63569 * 15 14 13 17 17 H 1.07997 * 120.00520 * 173.47865 * 16 15 14 18 18 C 1.38817 * 119.99855 * 353.48986 * 16 15 14 19 19 N 1.31614 * 120.00317 * 5.05667 * 18 16 15 20 20 Si 1.86803 * 119.99682 * 185.06188 * 18 16 15 21 21 H 1.48510 * 109.47169 * 94.98576 * 20 18 16 22 22 H 1.48500 * 109.47191 * 214.98172 * 20 18 16 23 23 H 1.48500 * 109.47453 * 334.98653 * 20 18 16 24 24 C 1.47578 * 91.01219 * 24.64075 * 15 14 13 25 25 H 1.08999 * 109.46842 * 180.69941 * 1 2 3 26 26 H 1.08997 * 109.47393 * 300.69485 * 1 2 3 27 27 H 1.08998 * 109.47154 * 60.70338 * 1 2 3 28 28 H 1.09004 * 110.75009 * 275.07126 * 4 2 1 29 29 H 1.08996 * 110.75775 * 38.43733 * 4 2 1 30 30 H 1.09001 * 110.46553 * 203.39216 * 5 4 2 31 31 H 1.08997 * 110.58600 * 80.82879 * 5 4 2 32 32 H 1.08999 * 110.03580 * 264.32884 * 6 5 4 33 33 H 1.09004 * 110.03318 * 142.89814 * 6 5 4 34 34 H 1.09005 * 109.47211 * 177.16356 * 8 7 6 35 35 H 1.08997 * 109.47157 * 297.16837 * 8 7 6 36 36 H 1.09002 * 109.46845 * 57.16631 * 8 7 6 37 37 H 1.09001 * 109.47556 * 89.99859 * 12 11 9 38 38 H 1.09005 * 109.46791 * 209.99694 * 12 11 9 39 39 H 1.08997 * 109.47200 * 329.99508 * 12 11 9 40 40 H 1.09004 * 112.94463 * 348.40953 * 13 11 9 41 41 H 1.09002 * 113.77175 * 336.34822 * 14 13 11 42 42 H 1.09002 * 113.77221 * 107.74797 * 14 13 11 43 43 H 0.97004 * 120.00292 * 180.02562 * 19 18 16 44 44 H 1.09001 * 113.76840 * 221.05577 * 24 15 14 45 45 H 1.08998 * 113.77059 * 89.66052 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0721 -0.7805 1.2231 5 6 3.4938 -1.1946 0.7571 6 6 3.3186 -1.5368 -0.7368 7 6 2.0700 -0.7772 -1.2183 8 6 1.0152 -1.7663 -1.7184 9 6 2.4408 0.1821 -2.3197 10 8 2.2930 1.3753 -2.1599 11 7 2.9368 -0.2857 -3.4823 12 6 3.1149 -1.7270 -3.6754 13 6 3.2978 0.6469 -4.5528 14 6 2.9896 0.1183 -5.9654 15 7 4.3000 0.6771 -6.3514 16 6 4.8490 1.1116 -7.5282 17 1 5.8199 1.5845 -7.5291 18 6 4.1574 0.9443 -8.7201 19 7 2.9337 0.4598 -8.7086 20 14 4.9635 1.4069 -10.3405 21 1 5.5877 0.2023 -10.9446 22 1 3.9375 1.9499 -11.2666 23 1 6.0064 2.4361 -10.0986 24 6 4.7809 0.5795 -4.9596 25 1 -0.3633 -1.0276 0.0125 26 1 -0.3634 0.5246 0.8836 27 1 -0.3633 0.5029 -0.8962 28 1 2.1229 -0.1362 2.1008 29 1 1.4595 -1.6596 1.4228 30 1 3.8370 -2.0685 1.3109 31 1 4.1933 -0.3677 0.8795 32 1 3.1731 -2.6101 -0.8595 33 1 4.1936 -1.2115 -1.2996 34 1 0.1165 -1.2226 -2.0099 35 1 1.4059 -2.3101 -2.5785 36 1 0.7718 -2.4708 -0.9231 37 1 2.2064 -2.1514 -4.1028 38 1 3.9511 -1.9022 -4.3523 39 1 3.3198 -2.1996 -2.7149 40 1 2.9375 1.6599 -4.3732 41 1 2.9404 -0.9688 -6.0267 42 1 2.1436 0.6114 -6.4442 43 1 2.4506 0.3425 -9.5416 44 1 5.3651 1.4407 -4.6352 45 1 5.2579 -0.3722 -4.7253 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043772638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:46 Heat of formation + Delta-G solvation = 0.094811 kcal Electronic energy + Delta-G solvation = -23396.353607 eV Core-core repulsion = 20221.835082 eV Total energy + Delta-G solvation = -3174.518525 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.97970 -39.95800 -38.29546 -36.10471 -34.12669 -32.52696 -31.81047 -29.45588 -28.08453 -26.71187 -26.63136 -26.10920 -24.96692 -22.43579 -21.58095 -20.24039 -19.33702 -18.81957 -17.77210 -17.54930 -16.96837 -16.41459 -16.03617 -15.75270 -15.61351 -15.09117 -14.59072 -14.56138 -14.44054 -13.85741 -13.62785 -13.46056 -13.33363 -13.25753 -13.19609 -13.03755 -12.82805 -12.60507 -12.32434 -12.14561 -12.13644 -11.97180 -11.76729 -11.62684 -11.57740 -11.45565 -11.32846 -11.29184 -10.89979 -10.52795 -9.54466 -8.98245 -7.96956 -5.30880 1.44543 1.46444 1.55781 1.64835 1.99396 2.46930 3.21224 3.36804 3.42789 3.60382 3.68299 3.82996 4.03932 4.24895 4.28956 4.31697 4.40432 4.43077 4.46078 4.58498 4.61636 4.67049 4.68834 4.72300 4.80514 4.83352 4.92143 4.98943 5.00963 5.05797 5.13650 5.15338 5.20421 5.25338 5.28157 5.34830 5.40362 5.42969 5.47729 5.60615 5.69961 5.85541 6.51098 6.85742 7.21319 7.53682 8.48187 9.20818 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.038813 B = 0.003851 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.241694 B = 7269.919353 C = 7383.610355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 H 0.055 0.945 4 C -0.110 4.110 5 C -0.122 4.122 6 C -0.115 4.115 7 C -0.073 4.073 8 C -0.151 4.151 9 C 0.514 3.486 10 O -0.592 6.592 11 N -0.597 5.597 12 C 0.062 3.938 13 C 0.113 3.887 14 C 0.167 3.833 15 N -0.636 5.636 16 C -0.241 4.241 17 H 0.085 0.915 18 C -0.062 4.062 19 N -0.951 5.951 20 Si 0.982 3.018 21 H -0.283 1.283 22 H -0.294 1.294 23 H -0.268 1.268 24 C 0.115 3.885 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.106 0.894 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.040 0.960 42 H 0.033 0.967 43 H 0.251 0.749 44 H 0.047 0.953 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.359 -10.147 20.502 22.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.104 4.104 3 H 0.074 0.926 4 C -0.147 4.147 5 C -0.160 4.160 6 C -0.152 4.152 7 C -0.076 4.076 8 C -0.208 4.208 9 C 0.304 3.696 10 O -0.472 6.472 11 N -0.328 5.328 12 C -0.079 4.079 13 C 0.007 3.993 14 C 0.041 3.959 15 N -0.363 5.363 16 C -0.369 4.369 17 H 0.103 0.897 18 C -0.255 4.255 19 N -0.599 5.599 20 Si 0.809 3.191 21 H -0.210 1.210 22 H -0.220 1.220 23 H -0.192 1.192 24 C -0.011 4.011 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.125 0.875 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.130 0.870 40 H 0.105 0.895 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.406 -9.471 20.234 22.471 hybrid contribution 0.286 0.799 -1.596 1.808 sum -2.120 -8.672 18.638 20.666 Atomic orbital electron populations 1.21845 0.94277 1.02731 1.00822 1.21925 0.96328 0.98717 0.93428 0.92630 1.22602 0.95969 1.00069 0.96052 1.22410 0.97139 1.01695 0.94724 1.22380 0.94792 1.01210 0.96857 1.21476 0.98491 0.95038 0.92619 1.22295 0.97156 0.98216 1.03135 1.21485 0.75279 0.89350 0.83480 1.90622 1.56092 1.19129 1.81382 1.47932 1.62673 1.08283 1.13888 1.22418 1.02368 0.78668 1.04428 1.23269 0.95874 0.93881 0.86237 1.22403 0.89187 0.96052 0.88271 1.45943 1.13181 1.73091 1.04053 1.19395 1.01855 1.31876 0.83780 0.89700 1.25686 0.97212 1.01634 1.00969 1.70016 1.11623 1.51874 1.26380 0.85018 0.77333 0.77817 0.78889 1.20971 1.22026 1.19242 1.23054 0.94830 0.99321 0.83868 0.90138 0.92075 0.95054 0.91071 0.89187 0.89011 0.92960 0.87539 0.92439 0.93102 0.90410 0.88486 0.91343 0.91509 0.86982 0.89530 0.94204 0.94873 0.94020 0.93470 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 7.97 71.98 0.57 -2.15 16 2 C -0.09 -1.85 2.69 -9.72 -0.03 -1.88 16 3 H 0.06 1.62 6.88 -2.38 -0.02 1.61 16 4 C -0.11 -1.60 6.36 32.01 0.20 -1.40 16 5 C -0.12 -1.79 6.84 31.79 0.22 -1.57 16 6 C -0.11 -1.91 4.23 31.32 0.13 -1.77 16 7 C -0.07 -1.61 0.54 -52.20 -0.03 -1.63 16 8 C -0.15 -2.61 6.68 71.98 0.48 -2.13 16 9 C 0.51 16.89 6.28 87.66 0.55 17.44 16 10 O -0.59 -24.87 14.89 -3.06 -0.05 -24.92 16 11 N -0.60 -19.59 3.07 -828.32 -2.54 -22.13 16 12 C 0.06 1.52 7.11 127.77 0.91 2.42 16 13 C 0.11 4.73 4.40 46.75 0.21 4.94 16 14 C 0.17 8.18 6.84 86.48 0.59 8.77 16 15 N -0.64 -33.74 3.70 -717.33 -2.65 -36.40 16 16 C -0.24 -13.86 10.70 84.04 0.90 -12.96 16 17 H 0.09 4.67 7.83 -2.91 -0.02 4.65 16 18 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 19 N -0.95 -57.91 11.51 21.65 0.25 -57.66 16 20 Si 0.98 46.06 29.56 68.60 2.03 48.09 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 C 0.12 4.92 8.46 86.48 0.73 5.65 16 25 H 0.08 1.18 6.52 -2.39 -0.02 1.16 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.03 0.76 7.76 -2.39 -0.02 0.74 16 28 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.09 0.95 8.06 -2.39 -0.02 0.94 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.11 1.14 7.12 -2.39 -0.02 1.13 16 33 H 0.06 1.14 7.02 -2.38 -0.02 1.12 16 34 H 0.05 1.03 6.68 -2.38 -0.02 1.02 16 35 H 0.08 1.27 4.40 -2.39 -0.01 1.25 16 36 H 0.10 1.10 7.65 -2.39 -0.02 1.08 16 37 H 0.07 1.55 6.95 -2.39 -0.02 1.54 16 38 H 0.07 1.77 6.36 -2.38 -0.02 1.75 16 39 H 0.11 1.92 3.72 -2.39 -0.01 1.91 16 40 H 0.09 4.11 7.24 -2.38 -0.02 4.10 16 41 H 0.04 1.89 6.71 -2.39 -0.02 1.87 16 42 H 0.03 1.86 7.35 -2.39 -0.02 1.84 16 43 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 44 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.06 2.27 6.97 -2.39 -0.02 2.25 16 Total: -1.00 -73.13 332.88 3.92 -69.22 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.97 Total: 13.14 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 5.91 Total: 10.65 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -4.94 Total: -116.18 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.05 Total: -24.92 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -73.13 3.92 -69.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043772638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.310 kcal (2) G-P(sol) polarization free energy of solvation -73.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds